Gene: AT5G05140

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G05140
  • Transcript Identifier AT5G05140.1
  • Gene Type Coding gene
  • Location Chr5 : 1520353-1522297 : positive

Gene Family Information

  • ID HOM05D002493
  • #Genes/#Species 273/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G05140.1
  • uniprot Q9FHK9

Descriptions

  • Description Transcription elongation factor (TFIIS) family protein
  • Computational description Transcription elongation factor (TFIIS) family protein; FUNCTIONS IN: transcription regulator activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor IIS, N-terminal (InterPro:IPR017923), Transcription elongation factor, TFIIS/elongin A/CRSP70, N-terminal (InterPro:IPR010990); BEST Arabidopsis thaliana protein match is: Transcription elongation factor (TFIIS) family protein (TAIR:AT3G10820.2); Has 741 Blast hits to 730 proteins in 116 species: Archae - 0; Bacteria - 16; Metazoa - 377; Fungi - 33; Plants - 253; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006412
IEA
GOA Databasetranslation
GO:0006414
IEA
GOA Databasetranslational elongation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003746
IEA
GOA Databasetranslation elongation factor activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus
GO:0005634
IEA
InterPronucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR035441 TFIIS/LEDGF domain superfamily
IPR003617 Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type
IPR044805 Mediator of RNA polymerase II transcription subunit 26a/b-like
IPR017923 Transcription factor IIS, N-terminal
Mapman id Description
15.3.4.4.5.2 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription co-activation.MEDIATOR complex.other components.component MED26