Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0041671 Camellia sinensis var. sinensis HOM05D007034 ORTHO05D008665 6.5e-42 173.7 92 100.0
CSS0045322 Camellia sinensis var. sinensis HOM05D007034 ORTHO05D008665 3.2e-33 144.8 96 84.4
CSS0025577 Camellia sinensis var. sinensis HOM05D007034 ORTHO05D008665 5.5e-33 144.1 96 84.4
Actinidia18277 Actinidia chinensis HOM05D007034 ORTHO05D008665 1.3e-13 79.7 60 76.7
ECA246G4515 Erigeron canadensis HOM05D007034 ORTHO05D008665 2.4e-12 75.5 60 73.3
Lj5C84G9 Lonicera japonica HOM05D007034 ORTHO05D008665 2.4e-12 75.5 60 73.3
HanXRQChr05g0154511 Helianthus annuus HOM05D007034 ORTHO05D008665 1.2e-11 73.2 60 71.7
SalBow7G3686 Salvia bowleyana HOM05D007034 ORTHO05D008665 1.6e-11 72.8 60 68.3
Ciclev10030559m.g Citrus clementina HOM05D007034 ORTHO05D008665 2.0e-11 72.4 64 64.1
CAN.G1008.36 Capsicum annuum HOM05D007034 ORTHO05D008665 3.5e-11 71.6 70 58.6
SGA_v2.0_scaffold37G14662 Striga asiatica HOM05D007034 ORTHO05D008665 5.9e-11 70.9 62 66.1
DCAR_025620 Daucus carota HOM05D007034 ORTHO05D008665 1.0e-10 70.1 60 66.7
Migut.I00651 Erythranthe guttata HOM05D007034 ORTHO05D008665 1.0e-10 70.1 60 66.7
Lsat_1_v5_gn_5_9280 Lactuca sativa HOM05D007034 ORTHO05D008665 1.3e-10 69.7 60 65.0
Oeu012864.4 Olea europaea HOM05D007034 ORTHO05D008665 1.3e-10 69.7 60 66.7
Rhsim08G0200400 Rhododendron simsii HOM05D007034 ORTHO05D008665 1.3e-10 69.7 60 66.7
Nitab4.5_0000976g0250 Nicotiana tabacum HOM05D007034 ORTHO05D008665 1.7e-10 69.3 61 65.6
Potri.012G111800 Populus trichocarpa HOM05D007034 ORTHO05D008665 1.7e-10 69.3 70 58.6
Cc04_g05570 Coffea canephora HOM05D007034 ORTHO05D008665 2.9e-10 68.6 60 66.7
Nitab4.5_0009037g0010 Nicotiana tabacum HOM05D007034 ORTHO05D008665 3.8e-10 68.2 60 65.0
Sabra12G0081400 Salix brachista HOM05D007034 ORTHO05D008665 3.8e-10 68.2 64 62.5
Dinv13693 Davidia involucrata HOM05D007034 ORTHO05D008665 6.6e-10 67.4 60 65.0
Solyc03g117960.4 Solanum lycopersicum HOM05D007034 ORTHO05D008665 6.6e-10 67.4 60 63.3
Sopen03g036860 Solanum pennellii HOM05D007034 ORTHO05D008665 6.6e-10 67.4 60 63.3
Manes.06G128800 Manihot esculenta HOM05D007034 ORTHO05D008665 8.6e-10 67.0 64 62.5
PGSC0003DMG400014226 Solanum tuberosum HOM05D007034 ORTHO05D008665 8.6e-10 67.0 60 63.3
Peaxi162Scf00314g00825 Petunia axillaris HOM05D007034 ORTHO05D008665 1.1e-09 66.6 60 63.3
GSVIVG01014061001 Vitis vinifera HOM05D007034 ORTHO05D008665 2.5e-09 65.5 61 63.9
Atru.BG.50.p Acer truncatum HOM05D007034 ORTHO05D008665 7.3e-09 63.9 64 56.2
Thecc.03G143600 Theobroma cacao HOM05D007034 ORTHO05D008665 7.3e-09 63.9 74 52.7
CANSAT56G2345 Cannabis sativa HOM05D007034 ORTHO05D008665 9.5e-09 63.5 64 57.8
Nn3g16191 Nelumbo nucifera HOM05D007034 ORTHO05D008665 9.5e-09 63.5 61 62.3
Haze_19381 Corylus avellana HOM05D007034 ORTHO05D008665 1.2e-08 63.2 68 55.9
TAR374G0491 Trochodendron aralioides HOM05D007034 ORTHO05D008665 1.2e-08 63.2 72 55.6
Eucgr.G00023 Eucalyptus grandis HOM05D007034 ORTHO05D008665 2.1e-08 62.4 60 61.7
Duzib205G0091 Durio zibethinus HOM05D007034 ORTHO05D008665 3.6e-08 61.6 71 53.5
Lalb_Chr07g0183941 Lupinus albus HOM05D007034 ORTHO05D008665 3.6e-08 61.6 64 51.6
Cpa.g.sc13.204 Carica papaya HOM05D007034 ORTHO05D008665 6.1e-08 60.8 60 60.0
QL10p035731 Quercus lobata HOM05D007034 ORTHO05D008665 6.1e-08 60.8 65 58.5
Gohir.D07G050000 Gossypium hirsutum HOM05D007034 ORTHO05D008665 8.0e-08 60.5 71 52.1
PGR042G1727 Punica granatum HOM05D007034 ORTHO05D008665 1.0e-07 60.1 61 57.4
Ca_16833_v3 Cicer arietinum L. HOM05D007034 ORTHO05D008665 1.4e-07 59.7 60 55.0
Gohir.A07G045600 Gossypium hirsutum HOM05D007034 ORTHO05D008665 1.8e-07 59.3 71 50.7
Gorai.001G053100 Gossypium raimondii HOM05D007034 ORTHO05D008665 1.8e-07 59.3 71 50.7
Psat7g040600 Pisum sativum HOM05D007034 ORTHO05D008665 2.3e-07 58.9 60 53.3
Prupe.5G138100 Prunus persica HOM05D007034 ORTHO05D008665 2.3e-07 58.9 64 54.7
HPP92_006434 Vanilla planifolia HOM05D007034 ORTHO05D008665 2.3e-07 58.9 75 53.3
MBI11_g45190_MAGBIO Magnolia biondii HOM05D007034 ORTHO05D008665 3.0e-07 58.5 61 57.4
MD06G1128300 Malus domestica HOM05D007034 ORTHO05D008665 3.0e-07 58.5 64 53.1
Medtr8g095490 Medicago truncatula HOM05D007034 ORTHO05D008665 3.0e-07 58.5 60 53.3
TPR.G12786 Trifolium pratense HOM05D007034 ORTHO05D008665 3.0e-07 58.5 60 53.3
arahy.Tifrunner.gnm1.ann1.XWK03B Arachis hypogaea HOM05D007034 ORTHO05D008665 2.0e-06 55.8 61 52.5
PSO017G2510 Papaver somniferum HOM05D007034 ORTHO05D008665 2.0e-06 55.8 63 50.8
VMungo0251G1097 Vigna mungo HOM05D007034 ORTHO05D008665 2.0e-06 55.8 61 52.5
FAN04G0206 Fragaria x ananassa HOM05D007034 ORTHO05D008665 3.4e-06 55.1 60 56.7
Aqoxy5G02954 Aquilegia oxysepala HOM05D007034 ORTHO05D008665 5.7e-06 54.3 65 47.7
FAN08G2641 Fragaria x ananassa HOM05D007034 ORTHO05D008665 5.7e-06 54.3 60 56.7
Glyma.08G005800 Glycine max HOM05D007034 ORTHO05D008665 5.7e-06 54.3 62 50.0
PSO017G4759 Papaver somniferum HOM05D007034 ORTHO05D008665 5.7e-06 54.3 63 49.2
RcHm_v2.0_Chr7g0188231 Rosa chinensis HOM05D007034 ORTHO05D008665 5.7e-06 54.3 60 56.7
AUR62029782 Chenopodium quinoa HOM05D007034 ORTHO05D008665 7.5e-06 53.9 61 52.5
TWI23G0512 Tripterygium wilfordii HOM05D007034 ORTHO05D008665 7.5e-06 53.9 68 50.0
Lj4g0024388 Lotus japonicus HOM05D007034 ORTHO05D008665 9.8e-06 53.5 61 50.8


User provided reference genes

Program Settings