Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0041638 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 2.4e-228 795.0 375 100.0
CSS0001909 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 6.0e-227 790.4 375 99.5
vmacro17655 Vaccinium macrocarpon HOM05D004692 ORTHO05D006291 1.1e-201 706.4 375 85.6
Rhsim08G0150000 Rhododendron simsii HOM05D004692 ORTHO05D006291 2.5e-201 705.3 375 86.1
Dinv36841 Davidia involucrata HOM05D004692 ORTHO05D006291 4.3e-201 704.5 372 86.8
Actinidia01418 Actinidia chinensis HOM05D004692 ORTHO05D006291 1.5e-198 696.0 385 84.9
Hma1.2p1_0744F.1_g211680 Hydrangea macrophylla HOM05D004692 ORTHO05D006291 2.2e-197 692.2 372 83.9
Lj5A139T82 Lonicera japonica HOM05D004692 ORTHO05D006291 5.6e-193 677.6 371 82.5
Prupe.5G211900 Prunus persica HOM05D004692 ORTHO05D006291 7.6e-190 667.2 372 82.0
CiPaw.15G118000 Carya illinoinensis HOM05D004692 ORTHO05D006291 1.3e-189 666.4 374 79.9
QL10p021731 Quercus lobata HOM05D004692 ORTHO05D006291 1.3e-189 666.4 373 80.4
MD14G1218000 Malus domestica HOM05D004692 ORTHO05D006291 8.4e-189 663.7 372 81.5
QL10p021836 Quercus lobata HOM05D004692 ORTHO05D006291 1.1e-188 663.3 373 79.9
Hund09975 Selenicereus undatus HOM05D004692 ORTHO05D006291 1.4e-188 662.9 372 79.0
Lsat_1_v5_gn_4_112840 Lactuca sativa HOM05D004692 ORTHO05D006291 1.9e-188 662.5 373 81.8
TWI81G0688 Tripterygium wilfordii HOM05D004692 ORTHO05D006291 1.9e-188 662.5 373 78.6
MD06G1207500 Malus domestica HOM05D004692 ORTHO05D006291 2.5e-188 662.1 372 81.5
GSVIVG01008185001 Vitis vinifera HOM05D004692 ORTHO05D006291 3.2e-188 661.8 373 80.4
HanXRQChr16g0501991 Helianthus annuus HOM05D004692 ORTHO05D006291 7.1e-188 660.6 373 80.4
AUR62036914 Chenopodium quinoa HOM05D004692 ORTHO05D006291 9.3e-188 660.2 372 79.6
Ah.11g047310 Amaranthus hybridus HOM05D004692 ORTHO05D006291 2.7e-187 658.7 373 79.6
EL10Ac5g11213 Beta vulgaris HOM05D004692 ORTHO05D006291 1.8e-186 656.0 374 77.8
RcHm_v2.0_Chr7g0184081 Rosa chinensis HOM05D004692 ORTHO05D006291 3.9e-186 654.8 371 79.8
Ciclev10020592m.g Citrus clementina HOM05D004692 ORTHO05D006291 5.1e-186 654.4 373 79.4
MELO3C017264.2 Cucumis melo HOM05D004692 ORTHO05D006291 8.7e-186 653.7 373 78.0
CsaV3_1G003170 Cucumis sativus L. HOM05D004692 ORTHO05D006291 1.9e-185 652.5 373 78.0
Ah.02g120970 Amaranthus hybridus HOM05D004692 ORTHO05D006291 4.3e-185 651.4 373 79.1
Hund09942 Selenicereus undatus HOM05D004692 ORTHO05D006291 4.3e-185 651.4 391 75.7
Oeu058039.1 Olea europaea HOM05D004692 ORTHO05D006291 5.7e-185 651.0 372 79.3
Potri.015G055300 Populus trichocarpa HOM05D004692 ORTHO05D006291 5.7e-185 651.0 368 78.0
Manes.01G023900 Manihot esculenta HOM05D004692 ORTHO05D006291 7.4e-185 650.6 372 79.0
Cc04_g07930 Coffea canephora HOM05D004692 ORTHO05D006291 9.7e-185 650.2 372 78.8
Atru.chr9.678 Acer truncatum HOM05D004692 ORTHO05D006291 1.3e-184 649.8 373 78.6
Actinidia10430 Actinidia chinensis HOM05D004692 ORTHO05D006291 2.2e-184 649.0 382 81.7
Migut.J01255 Erythranthe guttata HOM05D004692 ORTHO05D006291 1.8e-183 646.0 373 77.7
Nn4g23609 Nelumbo nucifera HOM05D004692 ORTHO05D006291 2.4e-183 645.6 371 79.0
AUR62032158 Chenopodium quinoa HOM05D004692 ORTHO05D006291 4.1e-183 644.8 373 77.5
DCAR_015116 Daucus carota HOM05D004692 ORTHO05D006291 6.9e-183 644.0 372 78.5
FAN13G2141 Fragaria x ananassa HOM05D004692 ORTHO05D006291 6.9e-183 644.0 373 77.7
ECA232G0381 Erigeron canadensis HOM05D004692 ORTHO05D006291 2.6e-182 642.1 373 78.0
Aqoxy3G00609 Aquilegia oxysepala HOM05D004692 ORTHO05D006291 7.7e-182 640.6 373 76.7
Nitab4.5_0007617g0010 Nicotiana tabacum HOM05D004692 ORTHO05D006291 7.7e-182 640.6 379 75.5
FvH4_5g13050 Fragaria vesca HOM05D004692 ORTHO05D006291 2.9e-181 638.6 371 77.9
FAN18G3467 Fragaria x ananassa HOM05D004692 ORTHO05D006291 3.8e-181 638.3 371 77.9
CANSAT80G0730 Cannabis sativa HOM05D004692 ORTHO05D006291 8.5e-181 637.1 373 75.9
DCAR_015115 Daucus carota HOM05D004692 ORTHO05D006291 1.4e-180 636.3 372 77.4
Solyc12g038970.3 Solanum lycopersicum HOM05D004692 ORTHO05D006291 1.9e-180 636.0 371 75.7
Sopen12g019180 Solanum pennellii HOM05D004692 ORTHO05D006291 5.5e-180 634.4 371 75.5
Peaxi162Scf00119g00017 Petunia axillaris HOM05D004692 ORTHO05D006291 9.4e-180 633.6 372 75.5
arahy.Tifrunner.gnm1.ann1.51KNRK Arachis hypogaea HOM05D004692 ORTHO05D006291 2.1e-179 632.5 372 75.5
PGSC0003DMG400000653 Solanum tuberosum HOM05D004692 ORTHO05D006291 2.7e-179 632.1 371 75.5
CAN.G471.4 Capsicum annuum HOM05D004692 ORTHO05D006291 6.1e-179 630.9 371 74.9
arahy.Tifrunner.gnm1.ann1.F96WR3 Arachis hypogaea HOM05D004692 ORTHO05D006291 7.9e-179 630.6 372 75.8
MSTRG.22946 Avicennia marina HOM05D004692 ORTHO05D006291 7.9e-179 630.6 372 75.8
PSO017G3616 Papaver somniferum HOM05D004692 ORTHO05D006291 7.9e-179 630.6 372 75.0
TPR.G2028 Trifolium pratense HOM05D004692 ORTHO05D006291 7.9e-179 630.6 373 73.7
ClCG06G015290 Citrullus lanatus HOM05D004692 ORTHO05D006291 1.8e-178 629.4 372 76.1
Sed0023319 Sechium edule HOM05D004692 ORTHO05D006291 1.5e-177 626.3 372 75.3
Eucgr.B00659 Eucalyptus grandis HOM05D004692 ORTHO05D006291 2.5e-177 625.5 370 76.8
Lalb_Chr13g0302611 Lupinus albus HOM05D004692 ORTHO05D006291 4.3e-177 624.8 370 74.9
THA.LOC104819389 Tarenaya hassleriana HOM05D004692 ORTHO05D006291 9.7e-177 623.6 372 73.9
Ca_21742_v3 Cicer arietinum L. HOM05D004692 ORTHO05D006291 2.2e-176 622.5 373 73.7
Psat4g044040 Pisum sativum HOM05D004692 ORTHO05D006291 2.8e-176 622.1 373 73.5
Gohir.A07G057600 Gossypium hirsutum HOM05D004692 ORTHO05D006291 3.7e-176 621.7 373 74.5
arahy.Tifrunner.gnm1.ann1.6286TX Arachis hypogaea HOM05D004692 ORTHO05D006291 4.8e-176 621.3 380 73.7
PSO478G1466 Papaver somniferum HOM05D004692 ORTHO05D006291 4.8e-176 621.3 372 73.7
Phvul.003G180900 Phaseolus vulgaris HOM05D004692 ORTHO05D006291 1.1e-175 620.2 373 72.4
Sc12g0006990 Simmondsia chinensis HOM05D004692 ORTHO05D006291 1.8e-175 619.4 372 74.5
Lj4g0008523 Lotus japonicus HOM05D004692 ORTHO05D006291 9.1e-175 617.1 372 73.7
Gohir.D07G062400 Gossypium hirsutum HOM05D004692 ORTHO05D006291 1.2e-174 616.7 373 73.7
MBI14_g16236_MAGBIO Magnolia biondii HOM05D004692 ORTHO05D006291 1.2e-174 616.7 372 75.0
Medtr4g112810 Medicago truncatula HOM05D004692 ORTHO05D006291 1.5e-174 616.3 373 71.6
PGR083G2684 Punica granatum HOM05D004692 ORTHO05D006291 2.0e-174 615.9 373 74.8
Glyma.17G083400 Glycine max HOM05D004692 ORTHO05D006291 5.9e-174 614.4 374 72.7
Gorai.001G065900 Gossypium raimondii HOM05D004692 ORTHO05D006291 2.2e-173 612.5 374 73.5
SGA_v2.0_scaffold56G20037 Striga asiatica HOM05D004692 ORTHO05D006291 5.0e-173 611.3 382 73.0
arahy.Tifrunner.gnm1.ann1.RJWR3V Arachis hypogaea HOM05D004692 ORTHO05D006291 1.1e-172 610.1 372 73.9
SalBow5G2075 Salvia bowleyana HOM05D004692 ORTHO05D006291 1.9e-172 609.4 383 73.1
A10p28500 Brassica napus HOM05D004692 ORTHO05D006291 1.2e-171 606.7 367 72.5
CDE06G1750 Ceratophyllum demersum HOM05D004692 ORTHO05D006291 4.7e-171 604.7 370 71.9
Carub.0006s0707 Capsella rubella HOM05D004692 ORTHO05D006291 7.9e-171 604.0 369 72.9
Sp6g34780 Schrenkiella parvula HOM05D004692 ORTHO05D006291 2.3e-170 602.4 366 72.1
Thhalv10013807m.g Eutrema salsugineum HOM05D004692 ORTHO05D006291 3.0e-170 602.1 367 72.2
HanXRQChr16g0501981 Helianthus annuus HOM05D004692 ORTHO05D006291 5.1e-170 601.3 424 67.9
C03p04140 Brassica napus HOM05D004692 ORTHO05D006291 6.7e-170 600.9 369 71.3
ATR0691G179 Amborella trichopoda HOM05D004692 ORTHO05D006291 8.8e-170 600.5 372 72.0
BcaB08g37277 Brassica carinata HOM05D004692 ORTHO05D006291 3.3e-169 598.6 368 72.3
Sabra15G0080100 Salix brachista HOM05D004692 ORTHO05D006291 3.3e-169 598.6 460 61.3
C09p68780 Brassica napus HOM05D004692 ORTHO05D006291 9.7e-169 597.0 368 72.3
VMungo1215G1525 Vigna mungo HOM05D004692 ORTHO05D006291 9.7e-169 597.0 375 71.2
BraA03t09714Z Brassica rapa HOM05D004692 ORTHO05D006291 2.2e-168 595.9 370 71.1
A03p03660 Brassica napus HOM05D004692 ORTHO05D006291 2.8e-168 595.5 370 71.1
BolC3t12946H Brassica oleracea HOM05D004692 ORTHO05D006291 8.2e-168 594.0 370 70.3
FAN08G1512 Fragaria x ananassa HOM05D004692 ORTHO05D006291 1.4e-167 593.2 348 77.0
CDE07G1308 Ceratophyllum demersum HOM05D004692 ORTHO05D006291 1.8e-167 592.8 373 70.2
Thecc.03G112800 Theobroma cacao HOM05D004692 ORTHO05D006291 4.1e-167 591.7 372 72.8
AL6G18560 Arabidopsis lyrata HOM05D004692 ORTHO05D006291 2.0e-166 589.3 367 71.1
BcaNung05091 Brassica carinata HOM05D004692 ORTHO05D006291 2.0e-166 589.3 371 70.6
Aa31LG3G18370 Aethionema arabicum HOM05D004692 ORTHO05D006291 2.6e-166 589.0 401 66.3
AT5G08170 Arabidopsis thaliana HOM05D004692 ORTHO05D006291 4.5e-166 588.2 367 70.8
Duzib205G0043 Durio zibethinus HOM05D004692 ORTHO05D006291 2.2e-165 585.9 377 71.4
SHI18993 Sapria himalayana HOM05D004692 ORTHO05D006291 5.5e-164 581.3 405 66.7
TAR374G0590 Trochodendron aralioides HOM05D004692 ORTHO05D006291 1.0e-162 577.0 346 75.1
Os04g0466600 Oryza sativa ssp. japonica HOM05D004692 ORTHO05D006291 4.8e-160 568.2 371 66.6
HPP92_019130 Vanilla planifolia HOM05D004692 ORTHO05D006291 5.3e-159 564.7 374 67.1
BraA10t44898Z Brassica rapa HOM05D004692 ORTHO05D006291 9.1e-159 563.9 367 68.7
BolC9t59625H Brassica oleracea HOM05D004692 ORTHO05D006291 2.2e-157 559.3 368 69.0
unitig_26.g9673 Utricularia gibba HOM05D004692 ORTHO05D006291 2.9e-157 558.9 371 67.9
Nitab4.5_0000208g0050 Nicotiana tabacum HOM05D004692 ORTHO05D006291 5.0e-157 558.1 406 64.5
AagrBONN_evm.TU.Sc2ySwM_117.2364 Anthoceros agrestis HOM05D004692 ORTHO05D006291 2.6e-153 545.8 371 67.4
Pp3c14_21790 Physcomitrium patens HOM05D004692 ORTHO05D006291 7.0e-151 537.7 370 65.7
BcaB01g05624 Brassica carinata HOM05D004692 ORTHO05D006291 1.6e-150 536.6 373 65.7
HPP92_019140 Vanilla planifolia HOM05D004692 ORTHO05D006291 4.5e-150 535.0 361 65.9
Haze_18550 Corylus avellana HOM05D004692 ORTHO05D006291 1.0e-149 533.9 308 79.2
Mapoly0016s0188 Marchantia polymorpha HOM05D004692 ORTHO05D006291 2.9e-149 532.3 374 61.5
SMO115G0272 Selaginella moellendorffii HOM05D004692 ORTHO05D006291 4.7e-147 525.0 370 64.3
Zm00001eb424480 Zea mays HOM05D004692 ORTHO05D006291 5.9e-142 508.1 413 58.1
Ca_25716_v3 Cicer arietinum L. HOM05D004692 ORTHO05D006291 5.2e-138 495.0 293 73.4
CBR_g22406 Chara braunii HOM05D004692 ORTHO05D006291 1.0e-133 480.7 388 59.5
arahy.Tifrunner.gnm1.ann1.U185V9 Arachis hypogaea HOM05D004692 ORTHO05D006291 1.1e-132 477.2 372 61.3
CARHR205010 Cardamine hirsuta HOM05D004692 ORTHO05D006291 7.3e-124 448.0 274 73.7
CSS0041488 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 1.1e-122 444.1 250 86.4
CSS0018290 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 3.4e-113 412.5 222 87.8
CSS0026593 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 4.1e-111 405.6 225 86.7
Cfa019856 Carpinus fangiana HOM05D004692 ORTHO05D006291 2.7e-110 402.9 345 58.8
Medtr4g110140 Medicago truncatula HOM05D004692 ORTHO05D006291 3.9e-109 399.1 385 50.9
CSS0021853 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 1.6e-102 377.1 204 88.2
Sc12g0006960 Simmondsia chinensis HOM05D004692 ORTHO05D006291 1.0e-101 374.4 216 77.3
Hund10163 Selenicereus undatus HOM05D004692 ORTHO05D006291 4.4e-97 359.0 373 50.4
Pp3c13_22750 Physcomitrium patens HOM05D004692 ORTHO05D006291 4.2e-95 352.4 383 46.2
CSS0048768 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 5.6e-92 342.0 165 94.5
Cre01.g009350 Chlamydomonas reinhardtii HOM05D004692 ORTHO05D006291 5.3e-90 335.5 384 44.5
PRCOL_00005028 Prasinoderma coloniale HOM05D004692 ORTHO05D006291 2.4e-87 326.6 403 44.2
Cpa.g.c37454 Carica papaya HOM05D004692 ORTHO05D006291 2.0e-73 280.4 170 72.4
Lsat_1_v5_gn_5_119361 Lactuca sativa HOM05D004692 ORTHO05D006291 6.7e-69 265.4 171 73.7
Cre01.g053300 Chlamydomonas reinhardtii HOM05D004692 ORTHO05D006291 5.3e-50 202.6 475 29.7
Cpa.g.c37318 Carica papaya HOM05D004692 ORTHO05D006291 6.3e-43 179.1 94 80.9
FAN04G1239 Fragaria x ananassa HOM05D004692 ORTHO05D006291 8.3e-35 152.1 129 63.6
BcaC05g25434 Brassica carinata HOM05D004692 ORTHO05D006291 5.9e-33 146.0 112 59.8
C05p13090 Brassica napus HOM05D004692 ORTHO05D006291 1.7e-32 144.4 101 64.4
Ca_29974_v3 Cicer arietinum L. HOM05D000837 ORTHO05D008386 2.5e-31 140.6 84 76.2
Lsat_1_v5_gn_3_89601 Lactuca sativa HOM05D004692 ORTHO05D006291 1.5e-28 131.3 92 69.6
CDE06G1955 Ceratophyllum demersum HOM05D004692 ORTHO05D019764 3.5e-25 120.2 339 27.4
RcHm_v2.0_Chr2g0128461 Rosa chinensis HOM05D004692 ORTHO05D019764 1.8e-18 97.8 163 36.2
RcHm_v2.0_Chr4g0407261 Rosa chinensis HOM05D004692 ORTHO05D019764 6.6e-16 89.4 157 35.7
arahy.Tifrunner.gnm1.ann1.5N8491 Arachis hypogaea HOM05D004692 ORTHO05D019764 2.5e-15 87.4 64 60.9
RcHm_v2.0_Chr2g0129061 Rosa chinensis HOM05D004692 ORTHO05D006291 7.3e-15 85.9 43 83.7
SGA_v2.0_scaffold26G11385 Striga asiatica HOM05D004692 ORTHO05D019764 7.3e-15 85.9 47 80.9
RcHm_v2.0_Chr2g0164691 Rosa chinensis HOM05D004692 ORTHO05D019764 2.2e-11 74.3 40 80.0
Haze_18551 Corylus avellana HOM05D016865 ORTHO05D022463 1.7e-08 64.7 30 73.3
Cpa.g.c45305 Carica papaya HOM05D004692 ORTHO05D006291 4.7e-06 56.6 29 69.0
Cpa.g.c47417 Carica papaya HOM05D004692 ORTHO05D117256 4.7e-06 56.6 28 85.7


User provided reference genes

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