Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0041610 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 4.0e-110 401.4 193 100.0
CSS0031728 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.2e-109 399.8 193 99.5
CSS0049183 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.2e-109 399.8 193 99.5
vmacro18202 Vaccinium macrocarpon HOM05D003823 ORTHO05D004866 1.2e-106 389.8 187 98.9
Actinidia02709 Actinidia chinensis HOM05D003823 ORTHO05D004866 1.3e-105 386.3 193 95.9
Dinv06526 Davidia involucrata HOM05D003823 ORTHO05D004866 1.9e-104 382.5 193 94.8
Lsat_1_v5_gn_2_88881 Lactuca sativa HOM05D003823 ORTHO05D004866 3.3e-104 381.7 188 96.3
TAR374G1522 Trochodendron aralioides HOM05D003823 ORTHO05D004866 4.3e-104 381.3 193 92.7
Rhsim08G0068000 Rhododendron simsii HOM05D003823 ORTHO05D004866 5.6e-104 380.9 199 93.0
ECA238G0538 Erigeron canadensis HOM05D003823 ORTHO05D004866 1.6e-103 379.4 188 94.7
Duzib268G0082 Durio zibethinus HOM05D003823 ORTHO05D004866 2.1e-103 379.0 187 94.7
MBI02_g36598_MAGBIO Magnolia biondii HOM05D003823 ORTHO05D004866 2.1e-103 379.0 186 95.2
GSVIVG01020043001 Vitis vinifera HOM05D003823 ORTHO05D004866 4.8e-103 377.9 186 95.2
Zm00001eb203950 Zea mays HOM05D003823 ORTHO05D004866 4.8e-103 377.9 185 96.2
PSO017G2864 Papaver somniferum HOM05D003823 ORTHO05D004866 6.2e-103 377.5 186 95.2
HanXRQChr14g0449901 Helianthus annuus HOM05D003823 ORTHO05D004866 1.1e-102 376.7 188 93.6
Thecc.02G351700 Theobroma cacao HOM05D003823 ORTHO05D004866 1.1e-102 376.7 186 94.1
Aqoxy3G03322 Aquilegia oxysepala HOM05D003823 ORTHO05D004866 1.4e-102 376.3 187 94.1
Os02g0265400 Oryza sativa ssp. japonica HOM05D003823 ORTHO05D004866 1.4e-102 376.3 185 95.7
HanXRQChr02g0056361 Helianthus annuus HOM05D003823 ORTHO05D004866 1.8e-102 375.9 188 93.6
PSO478G3470 Papaver somniferum HOM05D003823 ORTHO05D004866 1.8e-102 375.9 186 94.6
COL.COLO4_22965 Corchorus olitorius HOM05D003823 ORTHO05D004866 2.4e-102 375.6 186 94.1
Gohir.A12G166100 Gossypium hirsutum HOM05D003823 ORTHO05D004866 2.4e-102 375.6 193 91.7
ATR0564G299 Amborella trichopoda HOM05D003823 ORTHO05D004866 3.1e-102 375.2 186 95.2
Cc07_g03190 Coffea canephora HOM05D003823 ORTHO05D004866 3.1e-102 375.2 193 92.2
Duzib251G0021 Durio zibethinus HOM05D003823 ORTHO05D004866 3.1e-102 375.2 186 94.1
Manes.05G098825 Manihot esculenta HOM05D003823 ORTHO05D004866 3.1e-102 375.2 186 94.1
Gohir.D12G169500 Gossypium hirsutum HOM05D003823 ORTHO05D004866 5.3e-102 374.4 187 92.5
Nn8g40950 Nelumbo nucifera HOM05D003823 ORTHO05D004866 5.3e-102 374.4 186 95.7
CDE02G3183 Ceratophyllum demersum HOM05D003823 ORTHO05D004866 6.9e-102 374.0 191 91.6
AUR62027457 Chenopodium quinoa HOM05D003823 ORTHO05D004866 9.0e-102 373.6 189 92.1
AUR62031242 Chenopodium quinoa HOM05D003823 ORTHO05D004866 9.0e-102 373.6 189 92.1
Atru.chr11.1839 Acer truncatum HOM05D003823 ORTHO05D004866 1.2e-101 373.2 186 94.6
CANSAT80G0583 Cannabis sativa HOM05D003823 ORTHO05D004866 1.2e-101 373.2 193 90.7
ClCG06G016300 Citrullus lanatus HOM05D003823 ORTHO05D004866 1.2e-101 373.2 187 92.5
MELO3C017163.2 Cucumis melo HOM05D003823 ORTHO05D004866 1.2e-101 373.2 187 92.5
CsaV3_1G002230 Cucumis sativus L. HOM05D003823 ORTHO05D004866 1.2e-101 373.2 187 92.5
Nn4g23085 Nelumbo nucifera HOM05D003823 ORTHO05D004866 2.6e-101 372.1 186 95.2
PGR083G1126 Punica granatum HOM05D003823 ORTHO05D004866 2.6e-101 372.1 188 93.6
Ciclev10032832m.g Citrus clementina HOM05D003823 ORTHO05D004866 4.5e-101 371.3 188 93.1
TAR622G1107 Trochodendron aralioides HOM05D003823 ORTHO05D004866 4.5e-101 371.3 186 93.0
CiPaw.11G041500 Carya illinoinensis HOM05D003823 ORTHO05D004866 5.8e-101 370.9 185 93.0
Gorai.008G182100 Gossypium raimondii HOM05D003823 ORTHO05D004866 5.8e-101 370.9 187 91.4
Glyma.02G268600 Glycine max HOM05D003823 ORTHO05D004866 7.6e-101 370.5 186 91.9
Atru.chr4.927 Acer truncatum HOM05D003823 ORTHO05D004866 9.9e-101 370.2 186 94.1
Ca_06062_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 9.9e-101 370.2 186 92.5
Ca_30714_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 9.9e-101 370.2 186 92.5
TPR.G25673 Trifolium pratense HOM05D003823 ORTHO05D004866 9.9e-101 370.2 186 91.9
VMungo0647G1166 Vigna mungo HOM05D003823 ORTHO05D004866 9.9e-101 370.2 186 91.4
Phvul.008G213700 Phaseolus vulgaris HOM05D003823 ORTHO05D004866 1.3e-100 369.8 186 90.9
Potri.001G354000 Populus trichocarpa HOM05D003823 ORTHO05D004866 1.3e-100 369.8 193 92.2
Gohir.A11G029891 Gossypium hirsutum HOM05D003823 ORTHO05D004866 1.7e-100 369.4 186 93.0
Sc12g0006240 Simmondsia chinensis HOM05D003823 ORTHO05D004866 1.7e-100 369.4 187 92.0
Psat2g025840 Pisum sativum HOM05D003823 ORTHO05D004866 2.9e-100 368.6 186 91.4
Ca_16285_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 3.8e-100 368.2 186 90.9
Lalb_Chr25g0280071 Lupinus albus HOM05D003823 ORTHO05D004866 3.8e-100 368.2 186 91.9
MD06G1190100 Malus domestica HOM05D003823 ORTHO05D004866 3.8e-100 368.2 193 90.7
MD14G1197000 Malus domestica HOM05D003823 ORTHO05D004866 3.8e-100 368.2 193 90.7
QL10p016165 Quercus lobata HOM05D003823 ORTHO05D004866 3.8e-100 368.2 187 90.9
SalBow6G5762 Salvia bowleyana HOM05D003823 ORTHO05D004866 3.8e-100 368.2 190 90.0
Cfa018968 Carpinus fangiana HOM05D000046 ORTHO05D004866 4.9e-100 367.9 193 90.7
FvH4_5g15250 Fragaria vesca HOM05D003823 ORTHO05D004866 4.9e-100 367.9 186 91.9
FAN04G0558 Fragaria x ananassa HOM05D003823 ORTHO05D004866 4.9e-100 367.9 186 91.9
FAN08G0194 Fragaria x ananassa HOM05D003823 ORTHO05D004866 4.9e-100 367.9 186 91.9
FAN13G2005 Fragaria x ananassa HOM05D003823 ORTHO05D004866 4.9e-100 367.9 186 91.9
FAN18G4237 Fragaria x ananassa HOM05D003823 ORTHO05D004866 4.9e-100 367.9 186 91.9
Cc04_g17180 Coffea canephora HOM05D003823 ORTHO05D004866 6.4e-100 367.5 187 90.9
Medtr5g085380 Medicago truncatula HOM05D003823 ORTHO05D004866 6.4e-100 367.5 186 90.9
RcHm_v2.0_Chr7g0180841 Rosa chinensis HOM05D003823 ORTHO05D004866 6.4e-100 367.5 193 90.7
Thecc.03G082400 Theobroma cacao HOM05D003823 ORTHO05D004866 6.4e-100 367.5 186 93.0
TWI81G0804 Tripterygium wilfordii HOM05D003823 ORTHO05D004866 6.4e-100 367.5 189 90.5
Gohir.D11G033300 Gossypium hirsutum HOM05D003823 ORTHO05D004866 8.4e-100 367.1 186 92.5
Gorai.007G036100 Gossypium raimondii HOM05D003823 ORTHO05D004866 8.4e-100 367.1 186 92.5
Manes.14G076100 Manihot esculenta HOM05D003823 ORTHO05D004866 1.1e-99 366.7 190 90.0
Psat5g111480 Pisum sativum HOM05D003823 ORTHO05D004866 1.1e-99 366.7 185 91.4
Hund02662 Selenicereus undatus HOM05D003823 ORTHO05D004866 1.1e-99 366.7 183 92.9
Medtr3g080480 Medicago truncatula HOM05D003823 ORTHO05D004866 1.4e-99 366.3 187 90.9
Potri.011G077900 Populus trichocarpa HOM05D003823 ORTHO05D004866 1.4e-99 366.3 186 91.9
Sed0017565 Sechium edule HOM05D003823 ORTHO05D004866 1.4e-99 366.3 185 91.9
Glyma.14G048800 Glycine max HOM05D003823 ORTHO05D004866 1.9e-99 365.9 186 90.9
THA.LOC104819434 Tarenaya hassleriana HOM05D003823 ORTHO05D004866 1.9e-99 365.9 186 91.4
TWI60G1055 Tripterygium wilfordii HOM05D003823 ORTHO05D004866 1.9e-99 365.9 187 92.5
Prupe.5G189200 Prunus persica HOM05D003823 ORTHO05D004866 2.4e-99 365.5 193 90.2
BcaB01g00874 Brassica carinata HOM05D003823 ORTHO05D004866 3.2e-99 365.2 186 90.3
BcaC01g01774 Brassica carinata HOM05D003823 ORTHO05D004866 3.2e-99 365.2 187 89.3
C03p72020 Brassica napus HOM05D003823 ORTHO05D004866 3.2e-99 365.2 187 89.3
BolC3t19499H Brassica oleracea HOM05D003823 ORTHO05D004866 3.2e-99 365.2 187 89.3
Cpa.g.sc388.5 Carica papaya HOM05D003823 ORTHO05D004866 3.2e-99 365.2 182 92.3
Sabra16G0232900 Salix brachista HOM05D003823 ORTHO05D004866 3.2e-99 365.2 183 93.4
Zm00001eb237810 Zea mays HOM05D003823 ORTHO05D004866 3.2e-99 365.2 185 93.0
EL10Ac8g19266 Beta vulgaris HOM05D003823 ORTHO05D004866 4.2e-99 364.8 189 90.5
Dinv38684 Davidia involucrata HOM05D003823 ORTHO05D004866 4.2e-99 364.8 187 90.4
Duzib084G0821 Durio zibethinus HOM05D003823 ORTHO05D004866 4.2e-99 364.8 186 91.4
PGSC0003DMG400018144 Solanum tuberosum HOM05D003823 ORTHO05D004866 4.2e-99 364.8 185 91.9
TPR.G29042 Trifolium pratense HOM05D003823 ORTHO05D004866 7.1e-99 364.0 185 90.8
Migut.D02333 Erythranthe guttata HOM05D003823 ORTHO05D004866 9.3e-99 363.6 183 91.3
Oeu022626.1 Olea europaea HOM05D003823 ORTHO05D004866 9.3e-99 363.6 186 89.8
Solyc03g113020.3 Solanum lycopersicum HOM05D003823 ORTHO05D004866 9.3e-99 363.6 185 91.9
Sopen03g032100 Solanum pennellii HOM05D003823 ORTHO05D004866 9.3e-99 363.6 185 91.9
MSTRG.9636 Avicennia marina HOM05D003823 ORTHO05D004866 1.2e-98 363.2 186 90.3
CARHR156490 Cardamine hirsuta HOM05D003823 ORTHO05D004866 1.2e-98 363.2 186 89.2
Lj4g0027914 Lotus japonicus HOM05D003823 ORTHO05D004866 1.2e-98 363.2 186 89.8
Sp5g14150 Schrenkiella parvula HOM05D003823 ORTHO05D004866 1.2e-98 363.2 186 89.8
A06p19840 Brassica napus HOM05D003823 ORTHO05D004866 1.6e-98 362.8 186 89.8
BraA06t25064Z Brassica rapa HOM05D003823 ORTHO05D004866 1.6e-98 362.8 186 89.8
Ciclev10022411m.g Citrus clementina HOM05D003823 ORTHO05D004866 2.1e-98 362.5 185 90.8
Aa31LG4G16460 Aethionema arabicum HOM05D003823 ORTHO05D004866 2.7e-98 362.1 187 87.7
A06p27290 Brassica napus HOM05D003823 ORTHO05D004866 2.7e-98 362.1 186 89.2
BraA06t25670Z Brassica rapa HOM05D003823 ORTHO05D004866 2.7e-98 362.1 186 89.2
Peaxi162Scf00009g00217 Petunia axillaris HOM05D003823 ORTHO05D004866 2.7e-98 362.1 183 92.3
Thhalv10010746m.g Eutrema salsugineum HOM05D003823 ORTHO05D004866 3.5e-98 361.7 186 89.2
Nitab4.5_0000785g0070 Nicotiana tabacum HOM05D003823 ORTHO05D004866 3.5e-98 361.7 185 91.4
Nitab4.5_0010010g0030 Nicotiana tabacum HOM05D003823 ORTHO05D004866 3.5e-98 361.7 185 91.4
CAN.G1305.7 Capsicum annuum HOM05D003823 ORTHO05D004866 4.6e-98 361.3 185 91.4
Sed0002791 Sechium edule HOM05D003823 ORTHO05D004866 4.6e-98 361.3 186 90.3
Eucgr.K02462 Eucalyptus grandis HOM05D003823 ORTHO05D004866 6.0e-98 360.9 206 84.0
Rhsim08G0157700 Rhododendron simsii HOM05D003823 ORTHO05D004866 6.0e-98 360.9 188 89.4
HPP92_020326 Vanilla planifolia HOM05D003823 ORTHO05D004866 6.0e-98 360.9 193 88.1
Actinidia37644 Actinidia chinensis HOM05D003823 ORTHO05D004866 7.9e-98 360.5 186 89.8
BcaC01g02292 Brassica carinata HOM05D003823 ORTHO05D004866 1.0e-97 360.1 186 89.2
C03p66970 Brassica napus HOM05D003823 ORTHO05D004866 1.0e-97 360.1 186 89.2
BolC3t18970H Brassica oleracea HOM05D003823 ORTHO05D004866 1.0e-97 360.1 186 89.2
THA.LOC104821437 Tarenaya hassleriana HOM05D003823 ORTHO05D004866 1.0e-97 360.1 186 89.2
DCAR_026066 Daucus carota HOM05D003823 ORTHO05D004866 1.8e-97 359.4 186 89.2
Migut.D02334 Erythranthe guttata HOM05D003823 ORTHO05D004866 1.1e-96 356.7 186 88.7
BcaB02g10689 Brassica carinata HOM05D003823 ORTHO05D004866 2.5e-96 355.5 187 87.2
AT3G47810 Arabidopsis thaliana HOM05D003823 ORTHO05D004866 4.3e-96 354.8 187 87.2
AL5G27100 Arabidopsis lyrata HOM05D003823 ORTHO05D004866 5.6e-96 354.4 186 87.6
CSS0031561 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 4.8e-95 351.3 188 91.5
Dinv19933 Davidia involucrata HOM05D003823 ORTHO05D004866 4.8e-95 351.3 187 88.8
Mapoly0081s0078 Marchantia polymorpha HOM05D003823 ORTHO05D004866 8.1e-95 350.5 182 89.0
SMO116G0153 Selaginella moellendorffii HOM05D003823 ORTHO05D004866 8.1e-95 350.5 187 85.6
Oeu006179.1 Olea europaea HOM05D003823 ORTHO05D004866 1.8e-94 349.4 187 86.1
Lj5A113G71 Lonicera japonica HOM05D003823 ORTHO05D004866 4.0e-94 348.2 187 86.6
Carub.0005s1392 Capsella rubella HOM05D003823 ORTHO05D004866 5.3e-94 347.8 181 88.4
Pp3c11_12990 Physcomitrium patens HOM05D003823 ORTHO05D004866 2.2e-92 342.4 182 87.4
Haze_07352 Corylus avellana HOM05D003823 ORTHO05D004866 9.3e-91 337.0 259 67.2
CBR_g29439 Chara braunii HOM05D003823 ORTHO05D004866 1.6e-90 336.3 183 83.6
Pp3c7_13070 Physcomitrium patens HOM05D003823 ORTHO05D004866 2.1e-87 325.9 182 84.1
SGA_v2.0_scaffold193G40709 Striga asiatica HOM05D003823 ORTHO05D004866 3.1e-86 322.0 191 79.1
GSVIVG01008037001 Vitis vinifera HOM05D003823 ORTHO05D004866 5.3e-86 321.2 161 91.9
CSS0019545 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.5e-85 319.7 187 84.0
CDE09G0968 Ceratophyllum demersum HOM05D005655 ORTHO05D007386 1.8e-81 306.2 152 91.4
MBI05_g00394_MAGBIO Magnolia biondii HOM05D000046 ORTHO05D000195 1.7e-76 289.7 143 93.7
CSS0004961 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.2e-74 283.5 194 76.8
QL93p0043_0002 Quercus lobata HOM05D003823 ORTHO05D004866 1.6e-74 283.1 143 91.6
SEGI_34945 Sequoiadendron giganteum HOM05D003823 ORTHO05D004866 1.8e-73 279.6 139 93.5
Actinidia17538 Actinidia chinensis HOM05D003823 ORTHO05D004866 2.3e-73 279.3 130 98.5
Nitab4.5_0012727g0030 Nicotiana tabacum HOM05D003823 ORTHO05D004866 2.0e-72 276.2 142 90.1
Lj4A511G17 Lonicera japonica HOM05D003823 ORTHO05D004866 9.4e-67 257.3 185 73.5
TAR729G0007 Trochodendron aralioides HOM05D003823 ORTHO05D004866 1.6e-66 256.5 164 77.4
Manes.01G188500 Manihot esculenta HOM05D003823 ORTHO05D004866 3.6e-66 255.4 128 87.5
Eucgr.G00164 Eucalyptus grandis HOM05D003823 ORTHO05D004866 8.8e-65 250.8 136 84.6
Eucgr.G00114 Eucalyptus grandis HOM05D003823 ORTHO05D004866 1.7e-63 246.5 148 79.7
MCO13G641 Micromonas commoda HOM05D003823 ORTHO05D004866 3.8e-60 235.3 188 55.9
Cre12.g499900 Chlamydomonas reinhardtii HOM05D003823 ORTHO05D004866 3.6e-58 228.8 189 57.1
Lj4A501G12 Lonicera japonica HOM05D003823 ORTHO05D004866 2.2e-55 219.5 166 69.9
Atru.chr9.2289 Acer truncatum HOM05D003823 ORTHO05D004866 4.4e-48 195.3 157 65.6
CSS0033378 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.2e-45 187.2 90 94.4
Gorai.007G237600 Gossypium raimondii HOM05D003823 ORTHO05D004866 3.5e-45 185.7 90 90.0
Gohir.D02G085100 Gossypium hirsutum HOM05D003823 ORTHO05D004866 9.4e-43 177.6 90 87.8
Gohir.A08G078101 Gossypium hirsutum HOM05D003823 ORTHO05D004866 8.0e-42 174.5 103 76.7
Gorai.005G191600 Gossypium raimondii HOM05D003823 ORTHO05D004866 2.3e-41 172.9 87 86.2
Gorai.003G098000 Gossypium raimondii HOM05D003823 ORTHO05D017994 4.0e-41 172.2 87 86.2
Gohir.D06G139701 Gossypium hirsutum HOM05D003823 ORTHO05D017994 8.8e-41 171.0 87 86.2
Gorai.008G100600 Gossypium raimondii HOM05D003823 ORTHO05D004866 1.5e-40 170.2 87 86.2
Gohir.A05G198301 Gossypium hirsutum HOM05D003823 ORTHO05D004866 2.6e-40 169.5 87 85.1
Gohir.D03G122233 Gossypium hirsutum HOM05D003823 ORTHO05D004866 2.6e-40 169.5 87 85.1
CSS0038842 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 3.4e-40 169.1 157 58.0
Gohir.D06G082500 Gossypium hirsutum HOM05D003823 ORTHO05D017994 5.9e-37 158.3 87 82.8
Thecc.02G319100 Theobroma cacao HOM05D003823 ORTHO05D004866 1.0e-36 157.5 139 61.2
Lj4g0026130 Lotus japonicus HOM05D003823 ORTHO05D004866 7.2e-35 151.4 96 78.1
Gorai.013G138400 Gossypium raimondii HOM05D003823 ORTHO05D004866 4.7e-34 148.7 79 82.3
unitig_0.g782 Utricularia gibba HOM05D003823 ORTHO05D004866 2.8e-31 139.4 69 81.2
Sabra15G0049800 Salix brachista HOM05D003823 ORTHO05D000412 3.7e-31 139.0 70 95.7
Gohir.A01G072501 Gossypium hirsutum HOM05D003823 ORTHO05D017994 2.1e-26 123.2 62 83.9
Gohir.A05G203200 Gossypium hirsutum HOM05D003823 ORTHO05D017994 2.1e-26 123.2 62 83.9
Gohir.A10G203700 Gossypium hirsutum HOM05D003823 ORTHO05D017994 2.1e-26 123.2 62 83.9
Gohir.A12G000600 Gossypium hirsutum HOM05D003823 ORTHO05D017994 2.1e-26 123.2 62 83.9
Gohir.D06G205050 Gossypium hirsutum HOM05D003823 ORTHO05D017994 2.1e-26 123.2 62 83.9
Gohir.D08G111400 Gossypium hirsutum HOM05D003823 ORTHO05D017994 2.1e-26 123.2 62 83.9
Gorai.005G095900 Gossypium raimondii HOM05D003823 ORTHO05D218813 3.4e-16 89.4 44 90.9
Sabra15G0057900 Salix brachista HOM05D003823 ORTHO05D349330 8.3e-15 84.7 42 97.6
Duzib248G1489 Durio zibethinus HOM05D003823 ORTHO05D186086 1.9e-14 83.6 44 88.6


User provided reference genes

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