Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0041546 Camellia sinensis var. sinensis HOM05D005183 ORTHO05D006684 1.6e-169 599.4 310 100.0
Dinv19828 Davidia involucrata HOM05D005183 ORTHO05D006684 3.7e-150 535.0 315 86.3
Actinidia10400 Actinidia chinensis HOM05D005183 ORTHO05D006684 9.2e-149 530.4 309 85.8
Oeu040539.1 Olea europaea HOM05D005183 ORTHO05D006684 8.1e-145 517.3 314 83.1
Hma1.2p1_0611F.1_g188660 Hydrangea macrophylla HOM05D005183 ORTHO05D006684 3.1e-144 515.4 315 84.1
vmacro17863 Vaccinium macrocarpon HOM05D005183 ORTHO05D006684 3.8e-142 508.4 337 78.0
Nn4g24833 Nelumbo nucifera HOM05D005183 ORTHO05D006684 1.0e-139 500.4 314 79.9
Nn2g14627 Nelumbo nucifera HOM05D005183 ORTHO05D006684 1.5e-138 496.5 314 78.7
Oeu013577.1 Olea europaea HOM05D005183 ORTHO05D006684 9.6e-138 493.8 314 79.6
DCAR_010653 Daucus carota HOM05D005183 ORTHO05D006684 1.6e-137 493.0 303 79.9
DCAR_029401 Daucus carota HOM05D005183 ORTHO05D006684 4.7e-137 491.5 303 79.5
TAR371G0749 Trochodendron aralioides HOM05D005183 ORTHO05D006684 4.0e-136 488.4 315 77.8
MSTRG.5807 Avicennia marina HOM05D005183 ORTHO05D006684 8.9e-136 487.3 311 78.8
GSVIVG01033782001 Vitis vinifera HOM05D005183 ORTHO05D006684 8.9e-136 487.3 314 77.1
Lsat_1_v5_gn_4_35140 Lactuca sativa HOM05D005183 ORTHO05D006684 2.0e-135 486.1 293 82.3
Aqoxy2G03309 Aquilegia oxysepala HOM05D005183 ORTHO05D006684 9.9e-135 483.8 314 77.4
Cc09_g05380 Coffea canephora HOM05D005183 ORTHO05D006684 2.2e-134 482.6 314 75.5
ClCG10G019350 Citrullus lanatus HOM05D005183 ORTHO05D006684 3.8e-134 481.9 314 76.4
HanXRQChr02g0051911 Helianthus annuus HOM05D005183 ORTHO05D006684 4.9e-134 481.5 307 80.1
PGSC0003DMG400028174 Solanum tuberosum HOM05D005183 ORTHO05D006684 1.4e-133 479.9 316 77.2
SGA_v2.0_scaffold75G24795 Striga asiatica HOM05D005183 ORTHO05D006684 2.4e-133 479.2 313 76.0
Solyc10g083600.2 Solanum lycopersicum HOM05D005183 ORTHO05D006684 9.3e-133 477.2 316 76.9
SGA_v2.0_scaffold40G15402 Striga asiatica HOM05D005183 ORTHO05D006684 1.6e-132 476.5 313 75.1
Migut.J00983 Erythranthe guttata HOM05D005183 ORTHO05D006684 3.5e-132 475.3 313 75.4
Gorai.002G242600 Gossypium raimondii HOM05D005183 ORTHO05D006684 3.5e-132 475.3 313 75.1
Lalb_Chr06g0173361 Lupinus albus HOM05D005183 ORTHO05D006684 3.5e-132 475.3 314 75.2
Nitab4.5_0002715g0140 Nicotiana tabacum HOM05D005183 ORTHO05D006684 4.6e-132 474.9 312 77.6
Sopen10g033080 Solanum pennellii HOM05D005183 ORTHO05D006684 7.8e-132 474.2 316 76.6
Gohir.A01G209300 Gossypium hirsutum HOM05D005183 ORTHO05D006684 1.0e-131 473.8 313 74.8
Migut.N00918 Erythranthe guttata HOM05D005183 ORTHO05D006684 1.3e-131 473.4 313 75.1
Gohir.D01G198400 Gossypium hirsutum HOM05D005183 ORTHO05D006684 1.3e-131 473.4 313 74.8
CAN.G1138.15 Capsicum annuum HOM05D005183 ORTHO05D006684 1.7e-131 473.0 314 76.4
Sc20g0006050 Simmondsia chinensis HOM05D005183 ORTHO05D006684 1.7e-131 473.0 313 75.4
vmacro00782 Vaccinium macrocarpon HOM05D005183 ORTHO05D006684 1.7e-131 473.0 310 78.7
Ah.09g233440 Amaranthus hybridus HOM05D005183 ORTHO05D006684 2.3e-131 472.6 308 74.7
PGR004G1465 Punica granatum HOM05D005183 ORTHO05D006684 2.3e-131 472.6 314 74.8
COL.COLO4_29815 Corchorus olitorius HOM05D005183 ORTHO05D006684 3.9e-131 471.9 313 75.4
Peaxi162Scf00110g02022 Petunia axillaris HOM05D005183 ORTHO05D006684 3.9e-131 471.9 314 75.5
Ciclev10028864m.g Citrus clementina HOM05D005183 ORTHO05D006684 5.1e-131 471.5 314 73.9
Lj3A998T32 Lonicera japonica HOM05D005183 ORTHO05D006684 6.6e-131 471.1 311 76.8
Thecc.05G081000 Theobroma cacao HOM05D005183 ORTHO05D006684 6.6e-131 471.1 313 75.4
Ca_06436_v3 Cicer arietinum L. HOM05D005183 ORTHO05D006684 8.7e-131 470.7 315 74.6
Hund27408 Selenicereus undatus HOM05D005183 ORTHO05D006684 1.1e-130 470.3 312 75.6
Manes.08G020900 Manihot esculenta HOM05D005183 ORTHO05D006684 1.9e-130 469.5 314 73.6
HanXRQChr17g0545251 Helianthus annuus HOM05D005183 ORTHO05D006684 3.3e-130 468.8 297 80.8
VMungo0720G1906 Vigna mungo HOM05D005183 ORTHO05D006684 3.3e-130 468.8 316 75.0
MELO3C018272.2 Cucumis melo HOM05D005183 ORTHO05D006684 4.3e-130 468.4 314 73.9
Psat6g078200 Pisum sativum HOM05D005183 ORTHO05D006684 4.3e-130 468.4 315 73.3
CiPaw.09G008700 Carya illinoinensis HOM05D005183 ORTHO05D006684 5.6e-130 468.0 313 73.5
Sed0001030 Sechium edule HOM05D005183 ORTHO05D006684 5.6e-130 468.0 299 75.9
Glyma.10G066200 Glycine max HOM05D005183 ORTHO05D006684 1.6e-129 466.5 315 75.2
Eucgr.A01543 Eucalyptus grandis HOM05D005183 ORTHO05D006684 3.6e-129 465.3 314 73.2
ECA233G2114 Erigeron canadensis HOM05D005183 ORTHO05D006684 4.8e-129 464.9 286 80.4
Lj5g0003294 Lotus japonicus HOM05D005183 ORTHO05D006684 4.8e-129 464.9 305 74.4
Glyma.13G151300 Glycine max HOM05D005183 ORTHO05D006684 6.2e-129 464.5 315 74.9
CsaV3_3G036840 Cucumis sativus L. HOM05D005183 ORTHO05D006684 8.1e-129 464.2 313 73.5
Duzib128G1222 Durio zibethinus HOM05D005183 ORTHO05D006684 8.1e-129 464.2 313 73.2
THA.LOC104808666 Tarenaya hassleriana HOM05D005183 ORTHO05D006684 1.1e-128 463.8 314 73.2
Potri.015G088700 Populus trichocarpa HOM05D005183 ORTHO05D006684 2.4e-128 462.6 315 73.3
TPR.G28986 Trifolium pratense HOM05D005183 ORTHO05D006684 6.9e-128 461.1 315 73.0
unitig_0.g1556 Utricularia gibba HOM05D005183 ORTHO05D006684 6.9e-128 461.1 313 72.5
Cpa.g.sc111.25 Carica papaya HOM05D005183 ORTHO05D006684 9.0e-128 460.7 305 75.7
QL07p040540 Quercus lobata HOM05D005183 ORTHO05D006684 1.2e-127 460.3 314 73.6
Hund17099 Selenicereus undatus HOM05D005183 ORTHO05D006684 2.0e-127 459.5 311 74.9
Phvul.007G223300 Phaseolus vulgaris HOM05D005183 ORTHO05D006684 7.6e-127 457.6 315 73.0
AUR62023398 Chenopodium quinoa HOM05D005183 ORTHO05D006684 9.9e-127 457.2 312 73.1
AUR62013753 Chenopodium quinoa HOM05D005183 ORTHO05D006684 1.3e-126 456.8 312 72.8
PSO478G0399 Papaver somniferum HOM05D005183 ORTHO05D006684 1.7e-126 456.4 308 74.0
Nitab4.5_0005311g0010 Nicotiana tabacum HOM05D005183 ORTHO05D006684 4.9e-126 454.9 292 78.4
PSO017G1745 Papaver somniferum HOM05D005183 ORTHO05D006684 6.4e-126 454.5 308 74.0
EL10Ac1g00750 Beta vulgaris HOM05D005183 ORTHO05D006684 1.1e-125 453.8 311 73.6
Cfa016373 Carpinus fangiana HOM05D005183 ORTHO05D006684 7.1e-125 451.1 314 72.3
Cfa008157 Carpinus fangiana HOM05D005183 ORTHO05D006684 4.6e-124 448.4 314 72.6
Haze_00122 Corylus avellana HOM05D005183 ORTHO05D006684 4.6e-124 448.4 341 68.3
CDE08G0191 Ceratophyllum demersum HOM05D005183 ORTHO05D006684 2.3e-123 446.0 311 71.7
Medtr1g061160 Medicago truncatula HOM05D005183 ORTHO05D006684 2.3e-123 446.0 313 70.6
Aa31LG8G10050 Aethionema arabicum HOM05D005183 ORTHO05D006684 3.9e-123 445.3 311 70.7
BcaC06g35547 Brassica carinata HOM05D005183 ORTHO05D006684 1.9e-122 443.0 314 69.4
BolC7t41857H Brassica oleracea HOM05D005183 ORTHO05D006684 1.9e-122 443.0 314 69.4
Zm00001eb255650 Zea mays HOM05D005183 ORTHO05D006684 7.4e-122 441.0 303 72.6
BcaB04g20435 Brassica carinata HOM05D005183 ORTHO05D006684 2.1e-121 439.5 314 69.4
Zm00001eb292270 Zea mays HOM05D005183 ORTHO05D006684 2.1e-121 439.5 303 72.3
A07p08780 Brassica napus HOM05D005183 ORTHO05D006684 2.8e-121 439.1 314 69.1
C07p13620 Brassica napus HOM05D005183 ORTHO05D006684 2.8e-121 439.1 314 69.1
BraA07t28669Z Brassica rapa HOM05D005183 ORTHO05D006684 6.2e-121 438.0 314 68.8
ATR0559G171 Amborella trichopoda HOM05D005183 ORTHO05D006684 8.1e-121 437.6 308 72.7
TWI74G1514 Tripterygium wilfordii HOM05D005183 ORTHO05D006684 1.1e-120 437.2 293 71.3
Carub.0003s2385 Capsella rubella HOM05D005183 ORTHO05D006684 1.8e-120 436.4 299 70.6
Sabra15G0111600 Salix brachista HOM05D005183 ORTHO05D006684 1.8e-120 436.4 315 69.2
BolC1t03963H Brassica oleracea HOM05D005183 ORTHO05D006684 6.9e-120 434.5 299 70.9
Prupe.7G117100 Prunus persica HOM05D005183 ORTHO05D006684 1.2e-119 433.7 315 68.9
HPP92_026689 Vanilla planifolia HOM05D005183 ORTHO05D006684 1.2e-119 433.7 316 70.3
C01p40070 Brassica napus HOM05D005183 ORTHO05D006684 1.5e-119 433.3 299 70.6
BcaB06g26517 Brassica carinata HOM05D005183 ORTHO05D006684 2.0e-119 433.0 314 67.8
A01p31440 Brassica napus HOM05D005183 ORTHO05D006684 2.0e-119 433.0 299 70.2
BraA01t03270Z Brassica rapa HOM05D005183 ORTHO05D006684 2.0e-119 433.0 299 70.2
Sp3g21310 Schrenkiella parvula HOM05D005183 ORTHO05D006684 7.6e-119 431.0 316 67.7
Thhalv10021169m.g Eutrema salsugineum HOM05D005183 ORTHO05D006684 1.7e-118 429.9 313 67.1
FvH4_6g17900 Fragaria vesca HOM05D005183 ORTHO05D006684 3.8e-118 428.7 327 65.7
FAN02G4090 Fragaria x ananassa HOM05D005183 ORTHO05D006684 3.8e-118 428.7 327 65.7
FAN14G3711 Fragaria x ananassa HOM05D005183 ORTHO05D006684 3.8e-118 428.7 327 65.7
Os01g0513800 Oryza sativa ssp. japonica HOM05D005183 ORTHO05D006684 3.8e-118 428.7 304 71.1
TPR.G5686 Trifolium pratense HOM05D005183 ORTHO05D006684 1.1e-117 427.2 293 72.0
MD12G1018000 Malus domestica HOM05D005183 ORTHO05D006684 1.4e-117 426.8 314 67.5
RcHm_v2.0_Chr3g0472151 Rosa chinensis HOM05D005183 ORTHO05D006684 1.4e-117 426.8 327 65.7
FAN05G1411 Fragaria x ananassa HOM05D005183 ORTHO05D006684 7.1e-117 424.5 327 64.8
AT3G23620 Arabidopsis thaliana HOM05D005183 ORTHO05D006684 1.2e-116 423.7 313 67.1
HPP92_017999 Vanilla planifolia HOM05D005183 ORTHO05D006684 1.2e-116 423.7 291 72.2
AL3G38300 Arabidopsis lyrata HOM05D005183 ORTHO05D006684 2.7e-116 422.5 313 66.8
FAN09G1214 Fragaria x ananassa HOM05D005183 ORTHO05D006684 1.3e-115 420.2 337 63.8
CARHR099550 Cardamine hirsuta HOM05D005183 ORTHO05D006684 1.8e-115 419.9 309 67.6
SEGI_13997 Sequoiadendron giganteum HOM05D005183 ORTHO05D006684 3.3e-114 415.6 308 66.9
SEGI_31815 Sequoiadendron giganteum HOM05D005183 ORTHO05D006684 7.4e-114 414.5 308 66.9
MD14G1016000 Malus domestica HOM05D005183 ORTHO05D006684 7.6e-111 404.4 295 68.1
Actinidia31290 Actinidia chinensis HOM05D005183 ORTHO05D006684 6.5e-110 401.4 309 69.6
Atru.chr8.1634 Acer truncatum HOM05D005183 ORTHO05D006684 1.4e-109 400.2 269 71.0
THA.LOC104804771 Tarenaya hassleriana HOM05D005183 ORTHO05D006684 2.5e-109 399.4 257 75.1
Rhsim11G0063800 Rhododendron simsii HOM05D005183 ORTHO05D006684 5.5e-109 398.3 310 68.1
FAN05G2784 Fragaria x ananassa HOM05D005183 ORTHO05D006684 8.2e-105 384.4 253 72.3
Gohir.A01G215950 Gossypium hirsutum HOM05D005183 ORTHO05D006684 2.4e-104 382.9 326 62.6
Pp3c4_19370 Physcomitrium patens HOM05D005183 ORTHO05D006684 6.3e-97 358.2 312 57.4
Nitab4.5_0000132g0170 Nicotiana tabacum HOM05D005183 ORTHO05D006684 2.3e-91 339.7 223 77.6
SMO367G0957 Selaginella moellendorffii HOM05D005183 ORTHO05D006684 3.0e-91 339.3 314 55.1
Mapoly0098s0050 Marchantia polymorpha HOM05D005183 ORTHO05D006684 8.8e-91 337.8 299 56.9
Lalb_Chr02g0155161 Lupinus albus HOM05D005183 ORTHO05D006684 1.1e-90 337.4 234 70.9
Ca_28565_v3 Cicer arietinum L. HOM05D005183 ORTHO05D006684 3.8e-86 322.4 224 71.9
Pp3c26_6490 Physcomitrium patens HOM05D005183 ORTHO05D006684 3.8e-86 322.4 310 53.5
AagrBONN_evm.TU.Sc2ySwM_344.5577 Anthoceros agrestis HOM05D005183 ORTHO05D006684 1.4e-85 320.5 307 53.7
Haze_19538 Corylus avellana HOM05D005183 ORTHO05D006684 1.3e-81 307.4 283 57.6
CBR_g32692 Chara braunii HOM05D012618 ORTHO05D006684 2.7e-76 289.7 275 54.9
Cre03.g197000 Chlamydomonas reinhardtii HOM05D005183 ORTHO05D006684 8.2e-73 278.1 300 48.7
Oeu037537.3 Olea europaea HOM05D005183 ORTHO05D006684 1.7e-70 270.4 214 65.9
MCO10G188 Micromonas commoda HOM05D005183 ORTHO05D006684 1.3e-65 254.2 294 46.9
HanXRQChr08g0223931 Helianthus annuus HOM05D005183 ORTHO05D006684 6.1e-52 208.8 175 67.4
PRCOL_00004600 Prasinoderma coloniale HOM05D005183 ORTHO05D006684 1.4e-48 197.6 308 38.3
Ca_11626_v3 Cicer arietinum L. HOM05D005183 ORTHO05D006684 3.6e-36 156.4 104 72.1
Lalb_Chr02g0155171 Lupinus albus HOM05D005183 ORTHO05D006684 5.4e-32 142.5 93 75.3
MSTRG.19230 Avicennia marina HOM05D005183 ORTHO05D026969 1.5e-29 134.4 90 74.4
Os05g0506900 Oryza sativa ssp. japonica HOM05D005183 ORTHO05D006684 2.1e-28 130.6 94 67.0
MELO3C028534.2 Cucumis melo HOM05D005183 ORTHO05D006684 1.9e-24 117.5 79 73.4
C04p39730 Brassica napus HOM05D005183 ORTHO05D026969 1.5e-21 107.8 90 64.4
BolC4t25545H Brassica oleracea HOM05D005183 ORTHO05D026969 1.5e-21 107.8 90 64.4
TAR371G0095 Trochodendron aralioides HOM05D005183 ORTHO05D045124 9.9e-18 95.1 115 53.0
BolC6t35803H Brassica oleracea HOM05D005183 ORTHO05D026969 8.4e-17 92.0 90 55.6
Dinv21257 Davidia involucrata HOM05D005183 ORTHO05D045124 1.5e-13 81.3 100 55.0


User provided reference genes

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