Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0041477 Camellia sinensis var. sinensis HOM05D003779 ORTHO05D002678 0.0e+00 1171.8 694 100.0
CSS0008137 Camellia sinensis var. sinensis HOM05D003779 ORTHO05D002678 3.7e-299 1031.2 690 92.0
Dinv41398 Davidia involucrata HOM05D003779 ORTHO05D002678 5.7e-191 671.8 692 63.7
Actinidia23546 Actinidia chinensis HOM05D003779 ORTHO05D002678 5.9e-188 661.8 703 61.9
Actinidia04285 Actinidia chinensis HOM05D003779 ORTHO05D002678 2.4e-181 639.8 690 58.6
Dinv42884 Davidia involucrata HOM05D003779 ORTHO05D002678 1.3e-179 634.0 698 61.2
Rhsim01G0036200 Rhododendron simsii HOM05D003779 ORTHO05D002678 5.6e-154 548.9 726 52.6
Ciclev10007258m.g Citrus clementina HOM05D003779 ORTHO05D002678 8.4e-150 535.0 704 49.4
Rhsim01G0045400 Rhododendron simsii HOM05D003779 ORTHO05D002678 5.4e-149 532.3 781 49.2
Cfa020847 Carpinus fangiana HOM05D003779 ORTHO05D002678 5.6e-146 522.3 706 51.8
Prupe.7G260100 Prunus persica HOM05D003779 ORTHO05D002678 7.3e-146 521.9 693 50.9
Thecc.09G033700 Theobroma cacao HOM05D003779 ORTHO05D002678 7.3e-146 521.9 694 50.3
Manes.14G111700 Manihot esculenta HOM05D003779 ORTHO05D002678 5.8e-143 512.3 707 50.1
QL02p092676 Quercus lobata HOM05D003779 ORTHO05D002678 2.4e-141 506.9 707 48.9
CSS0005827 Camellia sinensis var. sinensis HOM05D003779 ORTHO05D002678 4.6e-140 502.7 508 63.8
CiPaw.15G174200 Carya illinoinensis HOM05D003779 ORTHO05D002678 6.2e-137 492.3 648 51.9
CANSAT11G0231 Cannabis sativa HOM05D003779 ORTHO05D002678 2.0e-135 487.3 685 49.5
Haze_19235 Corylus avellana HOM05D003779 ORTHO05D002678 5.5e-133 479.2 801 44.4
CSS0034461 Camellia sinensis var. sinensis HOM05D003779 ORTHO05D002678 1.6e-132 477.6 447 72.9
RcHm_v2.0_Chr2g0085981 Rosa chinensis HOM05D003779 ORTHO05D002678 7.9e-132 475.3 751 45.8
FAN28G2365 Fragaria x ananassa HOM05D003779 ORTHO05D002678 2.3e-131 473.8 697 46.9
FvH4_1g01180 Fragaria vesca HOM05D003779 ORTHO05D002678 3.0e-131 473.4 697 47.1
FAN26G3236 Fragaria x ananassa HOM05D003779 ORTHO05D002678 3.9e-131 473.0 697 47.6
Cpa.g.sc46.127 Carica papaya HOM05D003779 ORTHO05D002678 8.7e-131 471.9 678 47.8
FAN19G1766 Fragaria x ananassa HOM05D003779 ORTHO05D002678 8.7e-131 471.9 697 46.9
Gorai.001G031400 Gossypium raimondii HOM05D003779 ORTHO05D002678 9.6e-130 468.4 686 49.3
TWI63G1714 Tripterygium wilfordii HOM05D003779 ORTHO05D002678 6.2e-129 465.7 697 45.9
Duzib187G1590 Durio zibethinus HOM05D003779 ORTHO05D002678 8.2e-129 465.3 710 49.2
Lj9C714G7 Lonicera japonica HOM05D003779 ORTHO05D002678 1.1e-128 464.9 691 47.8
Duzib168G2294 Durio zibethinus HOM05D003779 ORTHO05D002678 2.4e-128 463.8 708 46.9
Rhsim03G0256100 Rhododendron simsii HOM05D003779 ORTHO05D002678 2.4e-128 463.8 701 49.8
TWI34G0110 Tripterygium wilfordii HOM05D003779 ORTHO05D002678 9.0e-128 461.8 695 48.1
Atru.chr7.134 Acer truncatum HOM05D003779 ORTHO05D002678 1.1e-125 454.9 708 47.6
Gohir.A07G026300 Gossypium hirsutum HOM05D003779 ORTHO05D002678 5.5e-125 452.6 686 48.5
Gohir.D07G030200 Gossypium hirsutum HOM05D003779 ORTHO05D002678 5.1e-123 446.0 685 47.7
DCAR_019379 Daucus carota HOM05D003779 ORTHO05D002678 1.3e-121 441.4 699 45.6
FAN23G1864 Fragaria x ananassa HOM05D003779 ORTHO05D002678 1.3e-121 441.4 674 47.8
vmacro06092 Vaccinium macrocarpon HOM05D003779 ORTHO05D002678 1.3e-121 441.4 709 49.1
Potri.018G110100 Populus trichocarpa HOM05D003779 ORTHO05D002678 6.9e-120 435.6 748 43.7
Potri.006G187400 Populus trichocarpa HOM05D003779 ORTHO05D002678 1.4e-115 421.4 704 46.0
Manes.06G037900 Manihot esculenta HOM05D003779 ORTHO05D002678 1.1e-114 418.3 694 46.4
ClCG06G012240 Citrullus lanatus HOM05D003779 ORTHO05D002678 1.9e-114 417.5 707 43.7
COL.COLO4_18776 Corchorus olitorius HOM05D003779 ORTHO05D002678 4.8e-113 412.9 663 44.8
MD02G1009900 Malus domestica HOM05D003779 ORTHO05D002678 5.3e-112 409.5 722 47.5
EL10Ac8g18849 Beta vulgaris HOM05D003779 ORTHO05D002678 1.2e-111 408.3 702 44.7
Phvul.009G194000 Phaseolus vulgaris HOM05D003779 ORTHO05D002678 2.6e-111 407.1 751 42.7
Sed0010991 Sechium edule HOM05D003779 ORTHO05D002678 2.6e-111 407.1 728 47.4
TAR625G1002 Trochodendron aralioides HOM05D003779 ORTHO05D002678 8.5e-110 402.1 753 42.6
MELO3C010242.2 Cucumis melo HOM05D003779 ORTHO05D002678 3.0e-107 393.7 623 46.9
Gorai.013G217400 Gossypium raimondii HOM05D003779 ORTHO05D002678 3.0e-107 393.7 705 43.5
CsaV3_1G028740 Cucumis sativus L. HOM05D003779 ORTHO05D002678 6.7e-107 392.5 679 46.4
VMungo1309G0106 Vigna mungo HOM05D003779 ORTHO05D002678 4.4e-106 389.8 741 42.4
AUR62039744 Chenopodium quinoa HOM05D003779 ORTHO05D002678 2.2e-105 387.5 711 43.7
TAR636G1028 Trochodendron aralioides HOM05D003779 ORTHO05D002678 4.8e-105 386.3 750 42.3
Peaxi162Scf00347g00821 Petunia axillaris HOM05D003779 ORTHO05D002678 1.1e-104 385.2 669 42.6
Gohir.A13G184900 Gossypium hirsutum HOM05D003779 ORTHO05D002678 1.4e-104 384.8 731 41.5
Lj6g0022686 Lotus japonicus HOM05D003779 ORTHO05D002678 4.1e-104 383.3 688 41.7
Nitab4.5_0001201g0070 Nicotiana tabacum HOM05D003779 ORTHO05D002678 1.7e-102 377.9 682 43.0
arahy.Tifrunner.gnm1.ann1.MXR4WM Arachis hypogaea HOM05D003779 ORTHO05D002678 6.1e-100 369.4 680 41.3
AUR62043250 Chenopodium quinoa HOM05D003779 ORTHO05D002678 1.4e-99 368.2 702 42.5
CAN.G1116.7 Capsicum annuum HOM05D003779 ORTHO05D002678 5.2e-99 366.3 693 46.3
Sabra06G0142300 Salix brachista HOM05D003779 ORTHO05D002678 2.0e-98 364.4 802 38.5
Sed0025790 Sechium edule HOM05D003779 ORTHO05D002678 4.4e-98 363.2 706 40.7
PGR102G2779 Punica granatum HOM05D003779 ORTHO05D002678 7.4e-98 362.5 672 41.8
Nn8g39802 Nelumbo nucifera HOM05D003779 ORTHO05D002678 1.7e-97 361.3 757 41.3
arahy.Tifrunner.gnm1.ann1.Y7PKX5 Arachis hypogaea HOM05D003779 ORTHO05D002678 1.1e-96 358.6 685 40.9
Ca_14533_v3 Cicer arietinum L. HOM05D003779 ORTHO05D002678 1.8e-96 357.8 714 42.2
Eucgr.C00363 Eucalyptus grandis HOM05D003779 ORTHO05D002678 1.8e-96 357.8 684 43.4
Glyma.15G205600 Glycine max HOM05D003779 ORTHO05D002678 9.1e-96 355.5 715 41.1
Sabra06G0143300 Salix brachista HOM05D003779 ORTHO05D002678 2.6e-95 354.0 811 37.7
Sabra18G0093100 Salix brachista HOM05D003779 ORTHO05D002678 7.7e-95 352.4 816 36.5
Sopen07g001470 Solanum pennellii HOM05D003779 ORTHO05D002678 1.1e-93 348.6 693 43.1
Ah.14g078430 Amaranthus hybridus HOM05D003779 ORTHO05D002678 3.3e-90 337.0 708 40.4
Solyc07g005320.3 Solanum lycopersicum HOM05D003779 ORTHO05D002678 9.7e-90 335.5 682 44.7
Nitab4.5_0008534g0010 Nicotiana tabacum HOM05D003779 ORTHO05D002678 1.3e-89 335.1 682 42.5
Lalb_Chr08g0234021 Lupinus albus HOM05D003779 ORTHO05D002678 8.2e-89 332.4 741 39.0
ECA234G1613 Erigeron canadensis HOM05D003779 ORTHO05D002678 1.8e-88 331.3 690 37.0
Medtr2g450210 Medicago truncatula HOM05D003779 ORTHO05D002678 1.8e-88 331.3 698 38.5
TPR.G35880 Trifolium pratense HOM05D003779 ORTHO05D002678 5.3e-88 329.7 732 42.1
Lalb_Chr08g0233951 Lupinus albus HOM05D003779 ORTHO05D002678 2.7e-87 327.4 744 39.0
Lalb_Chr13g0300951 Lupinus albus HOM05D003779 ORTHO05D002678 1.5e-85 321.6 724 36.7
Oeu050477.1 Olea europaea HOM05D003779 ORTHO05D002678 5.5e-85 319.7 479 46.6
Glyma.09G097600 Glycine max HOM05D003779 ORTHO05D002678 1.2e-84 318.5 746 39.7
Psat1g022120 Pisum sativum HOM05D003779 ORTHO05D002678 2.3e-83 314.3 737 37.6
Aqoxy7G03464 Aquilegia oxysepala HOM05D003779 ORTHO05D002678 1.6e-79 301.6 743 37.6
CSS0012306 Camellia sinensis var. sinensis HOM05D003779 ORTHO05D002678 1.3e-78 298.5 190 86.3
Sp6g19720 Schrenkiella parvula HOM05D003779 ORTHO05D002678 1.7e-78 298.1 672 37.4
Ah.14g078210 Amaranthus hybridus HOM05D003779 ORTHO05D002678 1.1e-77 295.4 712 37.6
Dinv43216 Davidia involucrata HOM05D003779 ORTHO05D002678 3.3e-77 293.9 338 63.0
SalBow1G6151 Salvia bowleyana HOM05D003779 ORTHO05D002678 4.0e-75 287.0 705 42.8
MBI15_g10629_MAGBIO Magnolia biondii HOM05D003779 ORTHO05D002678 3.4e-74 283.9 744 41.9
Thhalv10012479m.g Eutrema salsugineum HOM05D003779 ORTHO05D002678 3.1e-72 277.3 686 36.9
CiPaw.16G114900 Carya illinoinensis HOM05D003779 ORTHO05D002678 4.1e-72 276.9 437 42.6
AL8G34140 Arabidopsis lyrata HOM05D003779 ORTHO05D002678 2.0e-71 274.6 689 36.3
Gorai.009G054800 Gossypium raimondii HOM05D003779 ORTHO05D002678 1.9e-69 268.1 470 40.4
Carub.0008s1859 Capsella rubella HOM05D003779 ORTHO05D002678 3.3e-69 267.3 669 36.2
Gohir.D05G053000 Gossypium hirsutum HOM05D003779 ORTHO05D002678 5.6e-69 266.5 470 40.9
PSO170G5719 Papaver somniferum HOM05D003779 ORTHO05D002678 4.7e-68 263.5 721 37.0
AT5G58040 Arabidopsis thaliana HOM05D003779 ORTHO05D002678 8.0e-68 262.7 670 36.0
Gohir.A05G051500 Gossypium hirsutum HOM05D003779 ORTHO05D002678 5.2e-67 260.0 470 40.4
Sc08g0004970 Simmondsia chinensis HOM05D003779 ORTHO05D002678 6.8e-67 259.6 477 43.6
Gohir.D13G191400 Gossypium hirsutum HOM05D003779 ORTHO05D002678 1.3e-65 255.4 515 40.2
DCAR_020882 Daucus carota HOM05D003779 ORTHO05D002678 2.2e-65 254.6 701 34.7
PSO017G3118 Papaver somniferum HOM05D003779 ORTHO05D002678 3.2e-64 250.8 721 36.5
VMungo1215G0704 Vigna mungo HOM05D003779 ORTHO05D002678 4.1e-64 250.4 681 34.2
CARHR271850 Cardamine hirsuta HOM05D003779 ORTHO05D002678 2.0e-63 248.1 671 37.0
Aa31LG3G13870 Aethionema arabicum HOM05D003779 ORTHO05D002678 1.7e-62 245.0 669 40.2
C09p49960 Brassica napus HOM05D003779 ORTHO05D002678 8.0e-60 236.1 671 36.1
THA.LOC104813541 Tarenaya hassleriana HOM05D003779 ORTHO05D002678 1.4e-59 235.3 675 32.4
BolC9t57849H Brassica oleracea HOM05D003779 ORTHO05D002678 1.8e-59 235.0 671 36.1
BcaB08g36155 Brassica carinata HOM05D003779 ORTHO05D002678 3.1e-59 234.2 668 34.3
A03p12430 Brassica napus HOM05D003779 ORTHO05D002678 4.0e-59 233.8 716 34.1
A10p16130 Brassica napus HOM05D003779 ORTHO05D002678 6.8e-59 233.0 669 33.6
BcaC04g19912 Brassica carinata HOM05D003779 ORTHO05D002678 1.5e-58 231.9 671 35.9
Lsat_1_v5_gn_5_91481 Lactuca sativa HOM05D003779 ORTHO05D002678 2.6e-58 231.1 671 36.8
BraA10t43616Z Brassica rapa HOM05D003779 ORTHO05D002678 1.1e-56 225.7 669 33.0
SalBow1G3877 Salvia bowleyana HOM05D003779 ORTHO05D002678 1.9e-56 224.9 688 34.7
Phvul.003G157600 Phaseolus vulgaris HOM05D003779 ORTHO05D002678 3.5e-55 220.7 689 31.6
Actinidia38340 Actinidia chinensis HOM05D003779 ORTHO05D007251 6.6e-54 216.5 160 73.8
BcaB01g04473 Brassica carinata HOM05D003779 ORTHO05D002678 6.2e-52 209.9 632 33.7
C03p14630 Brassica napus HOM05D003779 ORTHO05D002678 1.5e-50 205.3 711 33.6
CDE05G1362 Ceratophyllum demersum HOM05D003779 ORTHO05D002678 1.9e-48 198.4 759 31.4
unitig_0.g2698 Utricularia gibba HOM05D003779 ORTHO05D002678 4.6e-47 193.7 637 34.9
THA.LOC104817824 Tarenaya hassleriana HOM05D003779 ORTHO05D002678 5.6e-45 186.8 664 35.2
HanXRQChr12g0357201 Helianthus annuus HOM05D003779 ORTHO05D002678 8.9e-43 179.5 685 29.2
SGA_v2.0_scaffold387G50508 Striga asiatica HOM05D003779 ORTHO05D002678 6.4e-41 173.3 296 43.9
ATR0739G197 Amborella trichopoda HOM05D003779 ORTHO05D002678 2.4e-40 171.4 739 33.6
SHI02627 Sapria himalayana HOM05D003779 ORTHO05D002678 4.2e-40 170.6 643 29.1
Oeu026546.1 Olea europaea HOM05D003779 ORTHO05D002678 5.4e-40 170.2 488 33.4
Migut.J01330 Erythranthe guttata HOM05D003779 ORTHO05D002678 6.6e-38 163.3 695 35.4
Zm00001eb055800 Zea mays HOM05D003779 ORTHO05D002678 9.6e-37 159.5 683 29.0
SGA_v2.0_scaffold206G41814 Striga asiatica HOM05D003779 ORTHO05D002678 1.2e-36 159.1 432 36.8
Oeu026545.1 Olea europaea HOM05D003779 ORTHO05D002678 1.2e-34 152.5 149 62.4
HanXRQChr10g0314671 Helianthus annuus HOM05D003779 ORTHO05D002678 1.7e-33 148.7 579 29.5
Os03g0725100 Oryza sativa ssp. japonica HOM05D003779 ORTHO05D002678 4.9e-33 147.1 696 33.5
GSVIVG01023597001 Vitis vinifera HOM05D003779 ORTHO05D002678 2.4e-32 144.8 167 52.7
BraA03t10557Z Brassica rapa HOM05D003779 ORTHO05D002678 3.2e-32 144.4 628 32.6
Zm00001eb215820 Zea mays HOM05D003779 ORTHO05D002678 9.3e-32 142.9 685 34.5
BolC3t13903H Brassica oleracea HOM05D003779 ORTHO05D002678 1.4e-27 129.0 620 30.2
vmacro05800 Vaccinium macrocarpon HOM05D003779 ORTHO05D002678 5.8e-26 123.6 181 57.5
HPP92_020551 Vanilla planifolia HOM05D003779 ORTHO05D002678 2.4e-24 118.2 683 32.9
BcaC09g49900 Brassica carinata HOM05D003779 ORTHO05D002678 8.7e-22 109.8 161 49.7
Hma1.2p1_0222F.1_g093310 Hydrangea macrophylla HOM05D003779 ORTHO05D002678 1.9e-21 108.6 107 61.7
Hma1.2p1_2658F.1_g326355 Hydrangea macrophylla HOM05D003779 ORTHO05D002678 1.9e-21 108.6 107 61.7
PGSC0003DMG400003182 Solanum tuberosum HOM05D003779 ORTHO05D002678 1.3e-20 105.9 115 53.9
Dinv17810 Davidia involucrata HOM05D003779 ORTHO05D002678 6.9e-19 100.1 621 27.1
HPP92_020618 Vanilla planifolia HOM05D003779 ORTHO05D002678 8.7e-14 83.2 371 32.9
Cfa003918 Carpinus fangiana HOM05D008391 ORTHO05D009743 8.7e-06 56.6 124 41.9


User provided reference genes

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