Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0041333 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 9.6e-109 396.7 188 100.0
Dinv07919 Davidia involucrata HOM05D004729 ORTHO05D005451 1.8e-83 312.8 208 73.6
Lj4C592G4 Lonicera japonica HOM05D004729 ORTHO05D005451 1.6e-79 299.7 209 70.3
Hma1.2p1_0542F.1_g174920 Hydrangea macrophylla HOM05D004729 ORTHO05D005451 2.7e-79 298.9 206 72.3
CSS0005799 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 8.0e-79 297.4 213 71.4
Actinidia23053 Actinidia chinensis HOM05D004729 ORTHO05D005451 6.7e-78 294.3 208 71.6
CSS0018062 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 1.2e-77 293.5 218 69.3
DCAR_024544 Daucus carota HOM05D004729 ORTHO05D005451 5.7e-77 291.2 205 68.8
Prupe.1G503900 Prunus persica HOM05D004729 ORTHO05D005451 9.7e-77 290.4 208 66.8
QL09p035890 Quercus lobata HOM05D004729 ORTHO05D005451 9.7e-77 290.4 204 70.1
DCAR_024606 Daucus carota HOM05D004729 ORTHO05D005451 4.8e-76 288.1 204 68.6
TAR628G0451 Trochodendron aralioides HOM05D004729 ORTHO05D005451 3.1e-75 285.4 207 69.1
TAR151G0002 Trochodendron aralioides HOM05D004729 ORTHO05D005451 1.2e-74 283.5 208 66.3
COL.COLO4_38234 Corchorus olitorius HOM05D004729 ORTHO05D005451 1.6e-74 283.1 209 65.6
Gorai.009G243000 Gossypium raimondii HOM05D004729 ORTHO05D005451 1.6e-74 283.1 209 66.5
Eucgr.F03750 Eucalyptus grandis HOM05D004729 ORTHO05D005451 2.0e-74 282.7 209 66.0
Gohir.D05G234700 Gossypium hirsutum HOM05D004729 ORTHO05D005451 3.5e-74 282.0 209 66.5
MD08G1169900 Malus domestica HOM05D004729 ORTHO05D005451 3.5e-74 282.0 208 65.4
PGR042G2886 Punica granatum HOM05D004729 ORTHO05D005451 7.7e-74 280.8 203 67.5
Cpa.g.sc36.9 Carica papaya HOM05D004729 ORTHO05D005451 1.0e-73 280.4 203 65.5
Potri.005G173000 Populus trichocarpa HOM05D004729 ORTHO05D005451 1.0e-73 280.4 211 66.4
MD15G1356700 Malus domestica HOM05D004729 ORTHO05D005451 1.3e-73 280.0 208 64.9
Thecc.08G118600 Theobroma cacao HOM05D004729 ORTHO05D005451 1.3e-73 280.0 209 66.0
MSTRG.25403 Avicennia marina HOM05D004729 ORTHO05D005451 2.9e-73 278.9 211 65.4
GSVIVG01008929001 Vitis vinifera HOM05D004729 ORTHO05D005451 3.8e-73 278.5 207 67.6
Duzib116G0142 Durio zibethinus HOM05D004729 ORTHO05D005451 5.0e-73 278.1 209 67.0
Potri.002G087700 Populus trichocarpa HOM05D004729 ORTHO05D005451 5.0e-73 278.1 213 66.7
SalBow7G0963 Salvia bowleyana HOM05D004729 ORTHO05D005451 5.0e-73 278.1 204 67.2
Haze_00501 Corylus avellana HOM05D004729 ORTHO05D005451 6.5e-73 277.7 210 65.2
Duzib093G1993 Durio zibethinus HOM05D004729 ORTHO05D005451 1.1e-72 276.9 204 67.2
FvH4_2g26260 Fragaria vesca HOM05D004729 ORTHO05D005451 1.5e-72 276.6 209 65.6
FAN24G1570 Fragaria x ananassa HOM05D004729 ORTHO05D005451 1.5e-72 276.6 209 65.6
Hund27047 Selenicereus undatus HOM05D004729 ORTHO05D005451 1.5e-72 276.6 201 68.2
RcHm_v2.0_Chr6g0294871 Rosa chinensis HOM05D004729 ORTHO05D005451 3.2e-72 275.4 209 64.1
Atru.chr13.1337 Acer truncatum HOM05D004729 ORTHO05D005451 4.2e-72 275.0 208 63.0
Atru.chr13.1380 Acer truncatum HOM05D004729 ORTHO05D005451 4.2e-72 275.0 208 63.0
FAN15G1542 Fragaria x ananassa HOM05D004729 ORTHO05D005451 5.5e-72 274.6 209 65.1
Gohir.A05G236400 Gossypium hirsutum HOM05D004729 ORTHO05D005451 7.2e-72 274.2 209 65.1
Manes.02G159900 Manihot esculenta HOM05D004729 ORTHO05D005451 7.2e-72 274.2 205 65.9
Nn1g08655 Nelumbo nucifera HOM05D004729 ORTHO05D005451 7.2e-72 274.2 203 63.1
Aa31LG7G12040 Aethionema arabicum HOM05D004729 ORTHO05D005451 1.6e-71 273.1 208 60.6
Ciclev10001583m.g Citrus clementina HOM05D004729 ORTHO05D005451 1.6e-71 273.1 205 63.9
FAN27G3155 Fragaria x ananassa HOM05D004729 ORTHO05D005451 2.1e-71 272.7 209 65.1
Cc10_g10550 Coffea canephora HOM05D004729 ORTHO05D005451 2.7e-71 272.3 209 63.6
Lalb_Chr23g0270821 Lupinus albus HOM05D004729 ORTHO05D005451 2.7e-71 272.3 208 63.5
SGA_v2.0_scaffold52G19009 Striga asiatica HOM05D004729 ORTHO05D005451 2.7e-71 272.3 206 63.6
TWI56G0049 Tripterygium wilfordii HOM05D004729 ORTHO05D005451 2.7e-71 272.3 204 65.2
Oeu017724.4 Olea europaea HOM05D004729 ORTHO05D005451 3.6e-71 271.9 210 63.8
THA.LOC104817066 Tarenaya hassleriana HOM05D004729 ORTHO05D005451 4.7e-71 271.6 208 63.5
CiPaw.05G227200 Carya illinoinensis HOM05D004729 ORTHO05D005451 6.1e-71 271.2 205 64.4
AT2G25710 Arabidopsis thaliana HOM05D004729 ORTHO05D005451 8.0e-71 270.8 205 61.0
Carub.0004s0560 Capsella rubella HOM05D004729 ORTHO05D005451 8.0e-71 270.8 210 60.5
CsaV3_3G023700 Cucumis sativus L. HOM05D004729 ORTHO05D005451 1.8e-70 269.6 203 61.1
Migut.C01178 Erythranthe guttata HOM05D004729 ORTHO05D005451 3.0e-70 268.9 211 64.5
Thhalv10027838m.g Eutrema salsugineum HOM05D004729 ORTHO05D005451 3.0e-70 268.9 209 60.8
AL4G17320 Arabidopsis lyrata HOM05D004729 ORTHO05D005451 4.0e-70 268.5 209 59.8
MELO3C012993.2 Cucumis melo HOM05D004729 ORTHO05D005451 4.0e-70 268.5 203 61.1
Psat5g133600 Pisum sativum HOM05D004729 ORTHO05D005451 4.0e-70 268.5 204 65.7
HanXRQChr06g0181001 Helianthus annuus HOM05D004729 ORTHO05D005451 1.5e-69 266.5 203 65.0
SGA_v2.0_scaffold24G10496 Striga asiatica HOM05D004729 ORTHO05D005451 1.5e-69 266.5 211 61.6
Oeu032968.2 Olea europaea HOM05D004729 ORTHO05D005451 2.0e-69 266.2 210 62.4
Phvul.009G121400 Phaseolus vulgaris HOM05D004729 ORTHO05D005451 2.6e-69 265.8 201 64.7
arahy.Tifrunner.gnm1.ann1.CLQ5CM Arachis hypogaea HOM05D004729 ORTHO05D005451 3.4e-69 265.4 201 65.2
Carub.0004s0549 Capsella rubella HOM05D004729 ORTHO05D005451 3.4e-69 265.4 212 59.0
CARHR115540 Cardamine hirsuta HOM05D004729 ORTHO05D005451 3.4e-69 265.4 205 60.0
Lj1g0017363 Lotus japonicus HOM05D004729 ORTHO05D005451 3.4e-69 265.4 203 65.5
Sp1g31520 Schrenkiella parvula HOM05D004729 ORTHO05D005451 3.4e-69 265.4 205 60.0
Glyma.04G252900 Glycine max HOM05D004729 ORTHO05D005451 4.4e-69 265.0 196 65.8
MBI06_g01065_MAGBIO Magnolia biondii HOM05D004729 ORTHO05D005451 4.4e-69 265.0 210 61.4
TPR.G22343 Trifolium pratense HOM05D004729 ORTHO05D005451 5.7e-69 264.6 202 64.9
Sc23g0000860 Simmondsia chinensis HOM05D004729 ORTHO05D005451 7.5e-69 264.2 200 64.5
BcaB05g24351 Brassica carinata HOM05D004729 ORTHO05D005451 9.8e-69 263.8 206 58.3
Lsat_1_v5_gn_8_107920 Lactuca sativa HOM05D004729 ORTHO05D005451 9.8e-69 263.8 203 64.0
Glyma.06G109600 Glycine max HOM05D004729 ORTHO05D005451 1.3e-68 263.5 196 66.8
PSO528G0069 Papaver somniferum HOM05D004729 ORTHO05D005451 2.2e-68 262.7 212 60.4
SalBow7G1557 Salvia bowleyana HOM05D004729 ORTHO05D005451 2.8e-68 262.3 195 66.2
Medtr3g073010 Medicago truncatula HOM05D004729 ORTHO05D005451 3.7e-68 261.9 202 63.4
VMungo1309G0261 Vigna mungo HOM05D004729 ORTHO05D005451 3.7e-68 261.9 201 64.2
CANSAT78G0882 Cannabis sativa HOM05D004729 ORTHO05D005451 6.3e-68 261.2 208 59.6
EL10Ac1g00023 Beta vulgaris HOM05D004729 ORTHO05D005451 8.3e-68 260.8 203 63.5
PSO170G2478 Papaver somniferum HOM05D004729 ORTHO05D005451 1.4e-67 260.0 212 59.4
AL1G51210 Arabidopsis lyrata HOM05D004729 ORTHO05D005451 2.4e-67 259.2 209 58.4
arahy.Tifrunner.gnm1.ann1.J2YLH9 Arachis hypogaea HOM05D004729 ORTHO05D005451 4.1e-67 258.5 201 63.7
A02p14780 Brassica napus HOM05D004729 ORTHO05D005451 7.0e-67 257.7 199 59.3
AT1G37150 Arabidopsis thaliana HOM05D004729 ORTHO05D005451 9.1e-67 257.3 210 57.1
AUR62023623 Chenopodium quinoa HOM05D004729 ORTHO05D005451 9.1e-67 257.3 148 75.7
ECA236G4997 Erigeron canadensis HOM05D004729 ORTHO05D005451 1.2e-66 256.9 203 62.1
BcaC03g14925 Brassica carinata HOM05D004729 ORTHO05D005451 1.6e-66 256.5 199 59.3
BolC2t08529H Brassica oleracea HOM05D004729 ORTHO05D005451 1.6e-66 256.5 199 59.3
BraA02t06545Z Brassica rapa HOM05D004729 ORTHO05D005451 2.7e-66 255.8 199 58.8
C02p24210 Brassica napus HOM05D004729 ORTHO05D005451 5.9e-66 254.6 199 58.8
Ah.05g172360 Amaranthus hybridus HOM05D004729 ORTHO05D005451 1.0e-65 253.8 193 64.2
C09p08700 Brassica napus HOM05D004729 ORTHO05D005451 6.5e-65 251.1 212 54.7
BolC9t53782H Brassica oleracea HOM05D004729 ORTHO05D005451 2.5e-64 249.2 212 55.2
BcaNung01386 Brassica carinata HOM05D004729 ORTHO05D005451 4.2e-64 248.4 212 55.2
CDE08G0072 Ceratophyllum demersum HOM05D004729 ORTHO05D005451 4.2e-64 248.4 201 60.2
BcaC04g23401 Brassica carinata HOM05D004729 ORTHO05D005451 1.2e-63 246.9 148 70.3
Sopen11g008240 Solanum pennellii HOM05D004729 ORTHO05D005451 1.2e-63 246.9 211 58.3
Aqoxy1G01637 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 2.8e-63 245.7 157 68.8
Aqoxy5G04147 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 4.7e-63 245.0 210 56.2
CAN.G321.55 Capsicum annuum HOM05D004729 ORTHO05D005451 8.0e-63 244.2 208 58.2
Lsat_1_v5_gn_3_63181 Lactuca sativa HOM05D004729 ORTHO05D005451 1.8e-62 243.0 203 58.6
ATR0684G041 Amborella trichopoda HOM05D004729 ORTHO05D005451 3.0e-62 242.3 198 60.1
Solyc11g013200.2 Solanum lycopersicum HOM05D004729 ORTHO05D005451 3.0e-62 242.3 211 57.3
Nitab4.5_0000494g0050 Nicotiana tabacum HOM05D004729 ORTHO05D005451 1.2e-61 240.4 205 60.0
HPP92_002257 Vanilla planifolia HOM05D004729 ORTHO05D005451 3.4e-61 238.8 206 57.8
Peaxi162Scf00679g00006 Petunia axillaris HOM05D004729 ORTHO05D005451 4.4e-61 238.4 203 59.6
Nitab4.5_0000193g0110 Nicotiana tabacum HOM05D004729 ORTHO05D005451 1.7e-60 236.5 207 59.4
Sed0026543 Sechium edule HOM05D004729 ORTHO05D005451 2.8e-60 235.7 134 73.1
CAN.G630.60 Capsicum annuum HOM05D004729 ORTHO05D005451 1.0e-57 227.3 206 57.3
unitig_46.g18427 Utricularia gibba HOM05D004729 ORTHO05D005451 1.7e-57 226.5 207 55.6
Zm00001eb232860 Zea mays HOM05D004729 ORTHO05D005451 2.3e-57 226.1 195 53.8
Os02g0167000 Oryza sativa ssp. japonica HOM05D004729 ORTHO05D005451 4.3e-56 221.9 153 64.7
ClCG11G010630 Citrullus lanatus HOM05D004729 ORTHO05D005451 1.8e-54 216.5 219 50.2
arahy.Tifrunner.gnm1.ann1.XVDB66 Arachis hypogaea HOM05D004729 ORTHO05D005451 5.2e-54 214.9 144 69.4
SHI32261 Sapria himalayana HOM05D004729 ORTHO05D005451 6.8e-54 214.5 156 60.9
AUR62029101 Chenopodium quinoa HOM05D004729 ORTHO05D005451 1.4e-51 206.8 200 54.0
Thhalv10004827m.g Eutrema salsugineum HOM05D004729 ORTHO05D005451 3.2e-51 205.7 114 72.8
Pp3c9_4090 Physcomitrium patens HOM05D004729 ORTHO05D005451 3.5e-50 202.2 151 60.3
Peaxi162Scf00412g00069 Petunia axillaris HOM05D004729 ORTHO05D005451 1.3e-49 200.3 169 59.8
Rhsim11G0066000 Rhododendron simsii HOM05D004729 ORTHO05D005451 1.1e-48 197.2 146 67.8
Mapoly0100s0036 Marchantia polymorpha HOM05D004729 ORTHO05D005451 1.6e-47 193.4 143 58.0
FAN18G3003 Fragaria x ananassa HOM05D004729 ORTHO05D005451 2.1e-47 193.0 201 52.2
AagrBONN_evm.TU.Sc2ySwM_117.2782 Anthoceros agrestis HOM05D004729 ORTHO05D005451 3.6e-47 192.2 139 59.0
Nn1g08666 Nelumbo nucifera HOM05D004729 ORTHO05D005451 1.3e-44 183.7 156 57.1
Manes.18G073729 Manihot esculenta HOM05D004729 ORTHO05D005451 5.4e-43 178.3 196 50.0
Nn5g28096 Nelumbo nucifera HOM05D004729 ORTHO05D005451 2.1e-39 166.4 93 79.6
CBR_g4408 Chara braunii HOM05D004729 ORTHO05D005451 2.4e-35 152.9 145 44.1
SMO356G0070 Selaginella moellendorffii HOM05D004729 ORTHO05D005451 1.2e-34 150.6 117 58.1
SEGI_02892 Sequoiadendron giganteum HOM05D004729 ORTHO05D005451 3.3e-32 142.5 114 55.3
Aa31LG6G9140 Aethionema arabicum HOM05D004729 ORTHO05D005451 3.6e-31 139.0 77 74.0
Lj3g0025484 Lotus japonicus HOM05D004729 ORTHO05D005451 1.4e-30 137.1 78 80.8
FvH4_5g31361 Fragaria vesca HOM05D004729 ORTHO05D005451 1.5e-29 133.7 78 78.2
PRCOL_00005327 Prasinoderma coloniale HOM05D004729 ORTHO05D005451 2.4e-27 126.3 140 43.6
MCO05G148 Micromonas commoda HOM05D004729 ORTHO05D005451 1.3e-25 120.6 122 44.3
arahy.Tifrunner.gnm1.ann1.M1Z3QL Arachis hypogaea HOM05D004729 ORTHO05D005451 3.6e-23 112.5 124 48.4
Cre09.g406000 Chlamydomonas reinhardtii HOM05D004729 ORTHO05D005451 8.1e-23 111.3 135 39.3
Lalb_Chr11g0065751 Lupinus albus HOM05D004729 ORTHO05D005451 4.4e-21 105.5 112 48.2
FvH4_5g31362 Fragaria vesca HOM05D004729 ORTHO05D005451 5.8e-21 105.1 117 50.4
A09p07790 Brassica napus HOM05D004729 ORTHO05D005451 1.2e-18 97.4 66 60.6
BraA09t36427Z Brassica rapa HOM05D004729 ORTHO05D005451 1.6e-18 97.1 62 61.3
Hma1.2p1_0009F.1_g006083 Hydrangea macrophylla HOM05D004729 ORTHO05D005451 1.1e-14 84.3 89 53.9
Hma1.2p1_0009F.1_g006090 Hydrangea macrophylla HOM05D004729 ORTHO05D005451 1.1e-14 84.3 89 53.9
Haze_27035 Corylus avellana HOM05D000050 ORTHO05D005451 6.4e-12 75.1 161 28.6
SEGI_13253 Sequoiadendron giganteum HOM05D004729 ORTHO05D005451 3.2e-11 72.8 47 66.0
arahy.Tifrunner.gnm1.ann1.7BX7P6 Arachis hypogaea HOM05D004729 ORTHO05D009789 4.6e-10 68.9 69 55.1
Aqoxy5G04170 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 7.4e-08 61.6 113 34.5


User provided reference genes

Program Settings