Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0041271 Camellia sinensis var. sinensis HOM05D005315 ORTHO05D006589 3.5e-66 255.0 145 100.0
CSS0017761 Camellia sinensis var. sinensis HOM05D005315 ORTHO05D006589 9.5e-64 246.9 145 97.2
CSS0021362 Camellia sinensis var. sinensis HOM05D005315 ORTHO05D006589 5.8e-29 131.3 104 77.9
CSS0027333 Camellia sinensis var. sinensis HOM05D005315 ORTHO05D006589 5.8e-29 131.3 104 77.9
QL10p015953 Quercus lobata HOM05D005315 ORTHO05D006589 2.2e-20 102.8 104 63.5
arahy.Tifrunner.gnm1.ann1.NZ3ZKL Arachis hypogaea HOM05D005315 ORTHO05D006589 2.9e-20 102.4 105 61.0
arahy.Tifrunner.gnm1.ann1.EUG2WG Arachis hypogaea HOM05D005315 ORTHO05D006589 8.4e-20 100.9 105 60.0
CiPaw.07G101900 Carya illinoinensis HOM05D005315 ORTHO05D006589 3.2e-19 99.0 103 61.2
AUR62029964 Chenopodium quinoa HOM05D005315 ORTHO05D006589 5.5e-19 98.2 106 58.5
Rhsim13G0016000 Rhododendron simsii HOM05D005315 ORTHO05D006589 1.2e-18 97.1 106 64.2
Ciclev10021031m.g Citrus clementina HOM05D005315 ORTHO05D006589 1.6e-18 96.7 101 62.4
TWI59G0122 Tripterygium wilfordii HOM05D005315 ORTHO05D006589 2.7e-18 95.9 98 61.2
Manes.05G066800 Manihot esculenta HOM05D005315 ORTHO05D006589 3.5e-18 95.5 102 61.8
QL12p024404 Quercus lobata HOM05D005315 ORTHO05D006589 4.6e-18 95.1 104 59.6
EL10Ac1g00719 Beta vulgaris HOM05D005315 ORTHO05D006589 7.9e-18 94.4 105 60.0
PGR044G2036 Punica granatum HOM05D005315 ORTHO05D006589 7.9e-18 94.4 92 63.0
vmacro02497 Vaccinium macrocarpon HOM05D005315 ORTHO05D006589 1.0e-17 94.0 101 62.4
Ca_09122_v3 Cicer arietinum L. HOM05D005315 ORTHO05D006589 1.3e-17 93.6 105 60.0
Lj1g0005840 Lotus japonicus HOM05D005315 ORTHO05D006589 1.8e-17 93.2 105 59.0
Nitab4.5_0000431g0150 Nicotiana tabacum HOM05D005315 ORTHO05D006589 1.8e-17 93.2 105 60.0
DCAR_003965 Daucus carota HOM05D005315 ORTHO05D006589 2.3e-17 92.8 104 56.7
Manes.01G214900 Manihot esculenta HOM05D005315 ORTHO05D006589 3.0e-17 92.4 101 57.4
Duzib133G0389 Durio zibethinus HOM05D005315 ORTHO05D006589 3.9e-17 92.0 82 68.3
Potri.014G134100 Populus trichocarpa HOM05D005315 ORTHO05D006589 3.9e-17 92.0 104 59.6
AUR62002550 Chenopodium quinoa HOM05D005315 ORTHO05D006589 5.1e-17 91.7 106 54.7
Sed0018657 Sechium edule HOM05D005315 ORTHO05D006589 5.1e-17 91.7 120 50.8
RcHm_v2.0_Chr6g0292881 Rosa chinensis HOM05D005315 ORTHO05D006589 6.7e-17 91.3 100 61.0
EL10Ac3g06247 Beta vulgaris HOM05D005315 ORTHO05D006589 8.7e-17 90.9 106 57.5
Gohir.A08G116900 Gossypium hirsutum HOM05D005315 ORTHO05D006589 8.7e-17 90.9 100 58.0
Sabra14G0100000 Salix brachista HOM05D005315 ORTHO05D006589 8.7e-17 90.9 100 61.0
Hund18046 Selenicereus undatus HOM05D005315 ORTHO05D006589 1.1e-16 90.5 110 55.5
Gohir.D08G137700 Gossypium hirsutum HOM05D005315 ORTHO05D006589 1.9e-16 89.7 89 62.9
Prupe.2G090200 Prunus persica HOM05D005315 ORTHO05D006589 1.9e-16 89.7 96 62.5
Glyma.03G210300 Glycine max HOM05D005315 ORTHO05D006589 2.5e-16 89.4 105 59.0
VMungo1383G1398 Vigna mungo HOM05D005315 ORTHO05D006589 2.5e-16 89.4 105 58.1
Duzib138G1810 Durio zibethinus HOM05D005315 ORTHO05D006589 3.3e-16 89.0 90 63.3
FvH4_2g14201 Fragaria vesca HOM05D005315 ORTHO05D006589 3.3e-16 89.0 120 55.0
FAN20G2356 Fragaria x ananassa HOM05D005315 ORTHO05D006589 3.3e-16 89.0 92 62.0
FAN24G2129 Fragaria x ananassa HOM05D005315 ORTHO05D006589 3.3e-16 89.0 120 55.0
Sopen04g023370 Solanum pennellii HOM05D005315 ORTHO05D006589 3.3e-16 89.0 107 60.7
Gorai.004G141000 Gossypium raimondii HOM05D005315 ORTHO05D006589 4.3e-16 88.6 100 57.0
Lj6A760G44 Lonicera japonica HOM05D005315 ORTHO05D006589 4.3e-16 88.6 96 60.4
Psat3g025640 Pisum sativum HOM05D005315 ORTHO05D006589 5.7e-16 88.2 104 55.8
ATR0665G323 Amborella trichopoda HOM05D005315 ORTHO05D006589 7.4e-16 87.8 90 62.2
MD03G1278200 Malus domestica HOM05D005315 ORTHO05D006589 9.7e-16 87.4 84 65.5
Solyc04g053080.4 Solanum lycopersicum HOM05D005315 ORTHO05D006589 9.7e-16 87.4 107 57.9
Cfa006013 Carpinus fangiana HOM05D005315 ORTHO05D006589 1.3e-15 87.0 104 54.8
Atru.chr4.1184 Acer truncatum HOM05D005315 ORTHO05D006589 1.6e-15 86.7 104 56.7
Cc07_g16220 Coffea canephora HOM05D005315 ORTHO05D006589 2.2e-15 86.3 104 57.7
Eucgr.K03447 Eucalyptus grandis HOM05D005315 ORTHO05D006589 2.2e-15 86.3 104 54.8
Prupe.8G254400 Prunus persica HOM05D005315 ORTHO05D006589 2.2e-15 86.3 104 58.7
Glyma.19G207500 Glycine max HOM05D005315 ORTHO05D006589 2.8e-15 85.9 105 56.2
Nitab4.5_0013619g0010 Nicotiana tabacum HOM05D005315 ORTHO05D008125 2.8e-15 85.9 105 57.1
Peaxi162Scf01132g00228 Petunia axillaris HOM05D005315 ORTHO05D006589 2.8e-15 85.9 105 58.1
Phvul.001G203400 Phaseolus vulgaris HOM05D005315 ORTHO05D006589 2.8e-15 85.9 104 55.8
TPR.G32271 Trifolium pratense HOM05D005315 ORTHO05D006589 2.8e-15 85.9 105 54.3
Sed0022397 Sechium edule HOM05D005315 ORTHO05D006589 3.7e-15 85.5 104 51.9
Nitab4.5_0000492g0210 Nicotiana tabacum HOM05D005315 ORTHO05D006589 4.8e-15 85.1 105 58.1
GSVIVG01010986001 Vitis vinifera HOM05D005315 ORTHO05D006589 4.8e-15 85.1 104 57.7
Lalb_Chr04g0259741 Lupinus albus HOM05D005315 ORTHO05D006589 6.3e-15 84.7 101 56.4
Nitab4.5_0008505g0010 Nicotiana tabacum HOM05D005315 ORTHO05D006589 1.1e-14 84.0 89 61.8
CAN.G276.6 Capsicum annuum HOM05D005315 ORTHO05D006589 1.4e-14 83.6 107 57.9
MD11G1300200 Malus domestica HOM05D005315 ORTHO05D006589 1.4e-14 83.6 84 63.1
PSO170G6158 Papaver somniferum HOM05D005315 ORTHO05D006589 1.4e-14 83.6 100 57.0
PSO210G5824 Papaver somniferum HOM05D005315 ORTHO05D006589 1.4e-14 83.6 100 57.0
CANSAT25G3366 Cannabis sativa HOM05D005315 ORTHO05D006589 3.1e-14 82.4 103 55.3
Cpa.g.sc9.185 Carica papaya HOM05D005315 ORTHO05D006589 3.1e-14 82.4 104 53.8
Dinv33007 Davidia involucrata HOM05D005315 ORTHO05D006589 3.1e-14 82.4 75 66.7
Thecc.01G292600 Theobroma cacao HOM05D005315 ORTHO05D006589 3.1e-14 82.4 83 65.1
ATR0564G214 Amborella trichopoda HOM05D005315 ORTHO05D006589 4.1e-14 82.0 90 57.8
Nn1g09466 Nelumbo nucifera HOM05D005315 ORTHO05D006589 4.1e-14 82.0 107 50.5
Haze_04835 Corylus avellana HOM05D005315 ORTHO05D006589 5.3e-14 81.6 105 53.3
MELO3C016054.2 Cucumis melo HOM05D005315 ORTHO05D006589 5.3e-14 81.6 104 50.0
Sc24g0001270 Simmondsia chinensis HOM05D005315 ORTHO05D006589 5.3e-14 81.6 101 53.5
Medtr4g104580 Medicago truncatula HOM05D005315 ORTHO05D006589 9.0e-14 80.9 106 54.7
ClCG09G006320 Citrullus lanatus HOM05D005315 ORTHO05D006589 1.5e-13 80.1 104 50.0
Migut.B00780 Erythranthe guttata HOM05D005315 ORTHO05D006589 2.0e-13 79.7 98 54.1
SGA_v2.0_scaffold304G47908 Striga asiatica HOM05D005315 ORTHO05D006589 2.0e-13 79.7 89 58.4
Aqoxy2G03077 Aquilegia oxysepala HOM05D005315 ORTHO05D006589 2.2e-12 76.3 104 51.0
Oeu028371.1 Olea europaea HOM05D005315 ORTHO05D006589 2.9e-12 75.9 99 53.5
THA.LOC104802209 Tarenaya hassleriana HOM05D005315 ORTHO05D006589 2.9e-12 75.9 112 48.2
MSTRG.16494 Avicennia marina HOM05D005315 ORTHO05D006589 5.0e-12 75.1 104 51.9
unitig_26.g9038 Utricularia gibba HOM05D005315 ORTHO05D006589 5.0e-12 75.1 82 61.0
Hma1.2p1_0399F.1_g144060 Hydrangea macrophylla HOM05D005315 ORTHO05D006589 1.1e-11 73.9 61 68.9
BcaB02g07311 Brassica carinata HOM05D005315 ORTHO05D006589 1.4e-11 73.6 90 53.3
BcaB02g08087 Brassica carinata HOM05D005315 ORTHO05D006589 3.2e-11 72.4 90 53.3
COL.COLO4_08010 Corchorus olitorius HOM05D005315 ORTHO05D006589 4.2e-11 72.0 70 60.0
Thhalv10006094m.g Eutrema salsugineum HOM05D005315 ORTHO05D006589 4.2e-11 72.0 95 51.6
CARHR173230 Cardamine hirsuta HOM05D005315 ORTHO05D006589 5.5e-11 71.6 75 60.0
Carub.0005s2959 Capsella rubella HOM05D005315 ORTHO05D006589 2.7e-10 69.3 90 52.2
A09p54790 Brassica napus HOM05D005315 ORTHO05D006589 3.6e-10 68.9 85 52.9
BraA09t40888Z Brassica rapa HOM05D005315 ORTHO05D006589 3.6e-10 68.9 85 52.9
BcaC02g10325 Brassica carinata HOM05D005315 ORTHO05D006589 4.6e-10 68.6 75 57.3
C04p30300 Brassica napus HOM05D005315 ORTHO05D006589 4.6e-10 68.6 75 57.3
BolC4t24563H Brassica oleracea HOM05D005315 ORTHO05D006589 4.6e-10 68.6 75 57.3
CDE04G3078 Ceratophyllum demersum HOM05D005315 ORTHO05D006589 4.6e-10 68.6 96 47.9
C08p37650 Brassica napus HOM05D005315 ORTHO05D006589 6.1e-10 68.2 95 49.5
BolC8t51348H Brassica oleracea HOM05D005315 ORTHO05D006589 6.1e-10 68.2 95 49.5
SEGI_33648 Sequoiadendron giganteum HOM05D005315 ORTHO05D006589 6.1e-10 68.2 82 53.7
CsaV3_7G028820 Cucumis sativus L. HOM05D005315 ORTHO05D006589 1.0e-09 67.4 84 53.6
Sp5g00580 Schrenkiella parvula HOM05D005315 ORTHO05D006589 1.0e-09 67.4 95 49.5
PGSC0003DMG400016587 Solanum tuberosum HOM05D005315 ORTHO05D006589 1.0e-09 67.4 61 70.5
Aa31LG10G16750 Aethionema arabicum HOM05D005315 ORTHO05D006589 1.8e-09 66.6 97 48.5
Medtr7g108240 Medicago truncatula HOM05D005315 ORTHO05D006589 1.8e-09 66.6 71 57.7
A04p00430 Brassica napus HOM05D005315 ORTHO05D006589 2.3e-09 66.2 79 55.7
Zm00001eb212540 Zea mays HOM05D005315 ORTHO05D006589 2.3e-09 66.2 105 46.7
BraA04t15762Z Brassica rapa HOM05D005315 ORTHO05D006589 6.7e-09 64.7 79 54.4
HPP92_002250 Vanilla planifolia HOM05D005315 ORTHO05D006589 6.7e-09 64.7 104 43.3
AagrBONN_evm.TU.Sc2ySwM_228.5144 Anthoceros agrestis HOM05D005315 ORTHO05D006589 1.1e-08 63.9 67 58.2
AT3G62940 Arabidopsis thaliana HOM05D005315 ORTHO05D006589 1.5e-08 63.5 83 49.4
SMO196G0226 Selaginella moellendorffii HOM05D005315 ORTHO05D006589 1.5e-08 63.5 106 47.2
Mapoly0036s0154 Marchantia polymorpha HOM05D005315 ORTHO05D006589 3.3e-08 62.4 86 50.0
Pp3c15_4060 Physcomitrium patens HOM05D005315 ORTHO05D006589 3.3e-08 62.4 70 58.6
CSS0030535 Camellia sinensis var. sinensis HOM05D017684 ORTHO05D109798 1.3e-07 60.5 45 77.8
Lsat_1_v5_gn_5_90141 Lactuca sativa HOM05D005315 ORTHO05D006589 1.3e-07 60.5 49 63.3
CBR_g50012 Chara braunii HOM05D005315 ORTHO05D006589 1.7e-07 60.1 78 51.3
HanXRQChr12g0357681 Helianthus annuus HOM05D005315 ORTHO05D006589 2.2e-07 59.7 69 56.5
AL5G45720 Arabidopsis lyrata HOM05D005315 ORTHO05D006589 4.8e-07 58.5 84 51.2
arahy.Tifrunner.gnm1.ann1.UST23B Arachis hypogaea HOM05D005315 ORTHO05D006589 4.8e-07 58.5 54 64.8


User provided reference genes

Program Settings