Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0041108 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 1.2e-277 959.1 480 100.0
CSS0044449 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 2.5e-177 625.9 449 76.4
Actinidia08674 Actinidia chinensis HOM05D004333 ORTHO05D005363 2.9e-165 585.9 475 64.8
Rhsim03G0212200 Rhododendron simsii HOM05D004333 ORTHO05D005363 4.4e-158 562.0 474 63.1
Dinv32109 Davidia involucrata HOM05D004333 ORTHO05D005363 6.0e-155 551.6 476 62.8
vmacro06413 Vaccinium macrocarpon HOM05D004333 ORTHO05D005363 3.1e-151 539.3 475 60.4
Lj1C1024G7 Lonicera japonica HOM05D004333 ORTHO05D005363 1.1e-140 504.2 474 57.0
Atru.chr12.2311 Acer truncatum HOM05D004333 ORTHO05D005363 9.3e-132 474.6 479 53.2
Cfa016195 Carpinus fangiana HOM05D004333 ORTHO05D005363 2.1e-131 473.4 476 53.6
QL11p010725 Quercus lobata HOM05D004333 ORTHO05D005363 3.5e-131 472.6 475 53.7
TAR633G0098 Trochodendron aralioides HOM05D004333 ORTHO05D005363 5.1e-130 468.8 478 53.8
Oeu001936.1 Olea europaea HOM05D004333 ORTHO05D005363 2.5e-129 466.5 472 51.3
Ciclev10000006m.g Citrus clementina HOM05D004333 ORTHO05D005363 3.5e-123 446.0 476 50.2
CiPaw.05G200800 Carya illinoinensis HOM05D004333 ORTHO05D005363 6.7e-122 441.8 476 50.8
Prupe.2G315300 Prunus persica HOM05D004333 ORTHO05D005363 1.1e-121 441.0 473 49.5
Manes.01G037200 Manihot esculenta HOM05D004333 ORTHO05D005363 9.6e-121 438.0 478 50.2
MD01G1225300 Malus domestica HOM05D004333 ORTHO05D005363 1.3e-120 437.6 473 51.0
MD07G1295800 Malus domestica HOM05D004333 ORTHO05D005363 1.6e-120 437.2 471 51.2
Thecc.03G204400 Theobroma cacao HOM05D004333 ORTHO05D005363 6.2e-120 435.3 474 49.4
FAN10G1078 Fragaria x ananassa HOM05D004333 ORTHO05D005363 8.4e-117 424.9 473 48.0
FAN06G4186 Fragaria x ananassa HOM05D004333 ORTHO05D005363 1.1e-116 424.5 473 48.0
FAN03G1314 Fragaria x ananassa HOM05D004333 ORTHO05D005363 3.2e-116 422.9 473 47.6
Haze_00260 Corylus avellana HOM05D004333 ORTHO05D005363 5.5e-116 422.2 497 48.7
FAN01G1860 Fragaria x ananassa HOM05D004333 ORTHO05D005363 4.6e-115 419.1 473 47.8
FAN10G0319 Fragaria x ananassa HOM05D004333 ORTHO05D005363 4.6e-115 419.1 473 47.6
CANSAT21G1061 Cannabis sativa HOM05D004333 ORTHO05D005363 6.1e-115 418.7 471 49.3
Gohir.A09G185800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 7.9e-115 418.3 473 48.0
Cc02_g01170 Coffea canephora HOM05D004333 ORTHO05D005363 1.8e-114 417.2 470 49.1
FvH4_7g32380 Fragaria vesca HOM05D004333 ORTHO05D005363 1.1e-113 414.5 473 47.4
RcHm_v2.0_Chr1g0381961 Rosa chinensis HOM05D004333 ORTHO05D005363 3.3e-113 412.9 473 48.4
FAN20G1934 Fragaria x ananassa HOM05D004333 ORTHO05D005363 4.3e-113 412.5 473 47.4
Gorai.006G202800 Gossypium raimondii HOM05D004333 ORTHO05D005363 1.3e-112 411.0 473 46.5
TWI39G1232 Tripterygium wilfordii HOM05D004333 ORTHO05D005363 1.6e-112 410.6 481 48.6
DCAR_020346 Daucus carota HOM05D004333 ORTHO05D005363 4.8e-112 409.1 474 50.0
Gohir.D12G248500 Gossypium hirsutum HOM05D004333 ORTHO05D005363 1.8e-111 407.1 476 47.3
Gorai.008G266500 Gossypium raimondii HOM05D004333 ORTHO05D005363 1.8e-111 407.1 476 46.4
Nitab4.5_0010367g0010 Nicotiana tabacum HOM05D004333 ORTHO05D005363 2.0e-110 403.7 475 49.3
Gohir.A12G247800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 2.2e-109 400.2 474 45.8
Sopen03g022440 Solanum pennellii HOM05D004333 ORTHO05D005363 2.5e-108 396.7 474 47.7
Nn7g38041 Nelumbo nucifera HOM05D004333 ORTHO05D005363 1.2e-107 394.4 476 47.1
GSVIVG01038603001 Vitis vinifera HOM05D004333 ORTHO05D005363 2.7e-107 393.3 476 48.3
Nitab4.5_0008197g0020 Nicotiana tabacum HOM05D004333 ORTHO05D005363 3.9e-106 389.4 452 49.8
arahy.Tifrunner.gnm1.ann1.SMAV3X Arachis hypogaea HOM05D004333 ORTHO05D005363 1.1e-105 387.9 468 45.5
Potri.012G020000 Populus trichocarpa HOM05D004333 ORTHO05D005363 2.0e-105 387.1 465 48.6
HanXRQChr04g0107121 Helianthus annuus HOM05D004333 ORTHO05D005363 2.5e-105 386.7 470 46.4
Actinidia34248 Actinidia chinensis HOM05D004333 ORTHO05D005363 4.3e-105 386.0 312 64.7
arahy.Tifrunner.gnm1.ann1.F5KWPZ Arachis hypogaea HOM05D004333 ORTHO05D005363 9.7e-105 384.8 468 45.5
Sabra12G0012900 Salix brachista HOM05D004333 ORTHO05D005363 1.3e-104 384.4 474 47.9
MBI06_g06689_MAGBIO Magnolia biondii HOM05D004333 ORTHO05D005363 3.7e-104 382.9 483 47.0
Potri.015G008500 Populus trichocarpa HOM05D004333 ORTHO05D005363 6.3e-104 382.1 472 47.5
SGA_v2.0_scaffold18G08437 Striga asiatica HOM05D004333 ORTHO05D005363 8.2e-104 381.7 465 46.0
Ca_16734_v3 Cicer arietinum L. HOM05D004333 ORTHO05D005363 1.8e-103 380.6 478 43.9
TPR.G33633 Trifolium pratense HOM05D004333 ORTHO05D005363 4.1e-103 379.4 478 44.4
Lj1g0003347 Lotus japonicus HOM05D004333 ORTHO05D005363 5.3e-103 379.0 464 45.7
Migut.F00177 Erythranthe guttata HOM05D004333 ORTHO05D005363 1.2e-102 377.9 466 45.1
ECA232G2446 Erigeron canadensis HOM05D004333 ORTHO05D005363 2.0e-102 377.1 473 44.8
Lsat_1_v5_gn_9_49400 Lactuca sativa HOM05D004333 ORTHO05D005363 5.9e-102 375.6 461 44.9
Glyma.04G232700 Glycine max HOM05D004333 ORTHO05D005363 1.7e-101 374.0 466 45.1
MSTRG.27005 Avicennia marina HOM05D004333 ORTHO05D005363 3.8e-101 372.9 472 44.9
ClCG03G011440 Citrullus lanatus HOM05D004333 ORTHO05D005363 3.8e-101 372.9 478 43.5
Lalb_Chr08g0240011 Lupinus albus HOM05D004333 ORTHO05D005363 8.5e-101 371.7 469 45.4
Medtr3g091940 Medicago truncatula HOM05D004333 ORTHO05D005363 8.5e-101 371.7 480 43.1
CAN.G481.56 Capsicum annuum HOM05D004333 ORTHO05D005363 1.1e-100 371.3 474 45.6
Sabra15G0006500 Salix brachista HOM05D004333 ORTHO05D005363 1.9e-100 370.5 476 46.4
Sed0018682 Sechium edule HOM05D004333 ORTHO05D005363 9.4e-100 368.2 478 42.7
Hund21026 Selenicereus undatus HOM05D004333 ORTHO05D005363 9.4e-100 368.2 475 44.0
Sc19g0000760 Simmondsia chinensis HOM05D004333 ORTHO05D005363 1.6e-99 367.5 473 44.0
Peaxi162Scf00740g00426 Petunia axillaris HOM05D004333 ORTHO05D005363 2.1e-99 367.1 473 44.2
AT5G24350 Arabidopsis thaliana HOM05D004333 ORTHO05D005363 2.7e-99 366.7 470 43.2
MELO3C010103.2 Cucumis melo HOM05D004333 ORTHO05D005363 1.0e-98 364.8 470 43.4
Psat5g074840 Pisum sativum HOM05D004333 ORTHO05D005363 1.5e-97 360.9 498 42.0
AL6G35880 Arabidopsis lyrata HOM05D004333 ORTHO05D005363 4.4e-97 359.4 470 43.2
CsaV3_1G044960 Cucumis sativus L. HOM05D004333 ORTHO05D005363 5.7e-97 359.0 478 42.5
AUR62016813 Chenopodium quinoa HOM05D004333 ORTHO05D005363 1.7e-96 357.5 473 41.6
Glyma.06G132300 Glycine max HOM05D004333 ORTHO05D005363 1.7e-96 357.5 470 43.6
Aqoxy5G04259 Aquilegia oxysepala HOM05D004333 ORTHO05D005363 1.4e-95 354.4 474 44.3
PSO063G3257 Papaver somniferum HOM05D004333 ORTHO05D005363 1.4e-95 354.4 480 44.2
AUR62010404 Chenopodium quinoa HOM05D004333 ORTHO05D005363 4.1e-95 352.8 473 41.0
Sp2g22970 Schrenkiella parvula HOM05D004333 ORTHO05D005363 4.1e-95 352.8 471 43.1
Phvul.009G048100 Phaseolus vulgaris HOM05D004333 ORTHO05D005363 9.1e-95 351.7 471 42.5
CARHR189090 Cardamine hirsuta HOM05D004333 ORTHO05D005363 1.6e-94 350.9 468 41.9
VMungo1309G1648 Vigna mungo HOM05D004333 ORTHO05D005363 1.6e-94 350.9 471 43.1
Carub.0006s2217 Capsella rubella HOM05D004333 ORTHO05D005363 3.5e-94 349.7 468 41.9
Aa31LG11G3970 Aethionema arabicum HOM05D004333 ORTHO05D005363 7.7e-94 348.6 477 41.5
Ah.01g018970 Amaranthus hybridus HOM05D004333 ORTHO05D005363 1.0e-93 348.2 473 41.9
Eucgr.D00250 Eucalyptus grandis HOM05D004333 ORTHO05D005363 1.3e-93 347.8 475 41.1
C07p43390 Brassica napus HOM05D004333 ORTHO05D005363 2.2e-93 347.1 471 43.1
BolC7t44866H Brassica oleracea HOM05D004333 ORTHO05D005363 2.2e-93 347.1 471 43.1
BraA06t26437Z Brassica rapa HOM05D004333 ORTHO05D005363 6.5e-93 345.5 470 43.0
BcaNung01227 Brassica carinata HOM05D004333 ORTHO05D005363 1.1e-92 344.7 469 43.5
Thhalv10003502m.g Eutrema salsugineum HOM05D004333 ORTHO05D005363 1.5e-92 344.4 468 42.3
PGR142G3828 Punica granatum HOM05D004333 ORTHO05D005363 1.5e-92 344.4 468 42.5
A06p35170 Brassica napus HOM05D004333 ORTHO05D005363 4.2e-92 342.8 472 42.6
EL10Ac9g21652 Beta vulgaris HOM05D004333 ORTHO05D005363 1.5e-89 334.3 475 39.2
THA.LOC104798907 Tarenaya hassleriana HOM05D004333 ORTHO05D005363 6.3e-88 328.9 465 41.7
Aa31LG11G3630 Aethionema arabicum HOM05D004333 ORTHO05D005363 7.0e-87 325.5 469 40.9
ATR0697G293 Amborella trichopoda HOM05D004333 ORTHO05D005363 1.6e-75 287.7 475 37.5
SHI08286 Sapria himalayana HOM05D004333 ORTHO05D005363 1.5e-68 264.6 339 44.2
HPP92_002817 Vanilla planifolia HOM05D004333 ORTHO05D005363 8.3e-64 248.8 460 33.3
CDE02G3740 Ceratophyllum demersum HOM05D004333 ORTHO05D005363 1.8e-63 247.7 490 35.5
CAN.G481.55 Capsicum annuum HOM05D004333 ORTHO05D005363 2.5e-60 237.3 320 43.8
Zm00001eb359130 Zea mays HOM05D004333 ORTHO05D005363 1.3e-56 224.9 470 33.0
SEGI_10720 Sequoiadendron giganteum HOM05D004333 ORTHO05D005363 1.4e-50 204.9 476 31.3
Gohir.D09G180800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 3.1e-50 203.8 204 52.0
CSS0025528 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 6.6e-45 186.0 191 57.6
CSS0015753 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 1.2e-43 181.8 191 57.1
unitig_0.g2452 Utricularia gibba HOM05D004333 ORTHO05D005363 5.2e-42 176.4 442 28.7
Psat0s2221g0080 Pisum sativum HOM05D004333 ORTHO05D005363 1.2e-35 155.2 207 41.1
Duzib068G0008 Durio zibethinus HOM05D004333 ORTHO05D005363 1.2e-33 148.7 220 40.5
CAN.G3762.1 Capsicum annuum HOM05D004333 ORTHO05D005363 9.3e-31 139.0 186 44.1
COL.COLO4_16822 Corchorus olitorius HOM05D004333 ORTHO05D005363 2.9e-24 117.5 96 60.4
Nitab4.5_0004178g0040 Nicotiana tabacum HOM05D004333 ORTHO05D005363 7.1e-23 112.8 128 48.4
Nitab4.5_0004178g0020 Nicotiana tabacum HOM05D004333 ORTHO05D005363 1.7e-21 108.2 212 38.2
AagrBONN_evm.TU.Sc2ySwM_362.1567 Anthoceros agrestis HOM05D004333 ORTHO05D005363 1.1e-20 105.5 496 24.4
SHI08287 Sapria himalayana HOM05D004333 ORTHO05D005363 5.6e-12 76.6 161 35.4
Mapoly0143s0007 Marchantia polymorpha HOM05D004333 ORTHO05D005363 4.8e-11 73.6 125 30.4
SalBow4G2088 Salvia bowleyana HOM05D004333 ORTHO05D005363 2.5e-07 61.2 45 62.2


User provided reference genes

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