Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040813 Camellia sinensis var. sinensis HOM05D007062 ORTHO05D008941 8.4e-109 397.5 278 100.0
CSS0025302 Camellia sinensis var. sinensis HOM05D007062 ORTHO05D008941 1.5e-105 386.7 284 97.2
Actinidia02105 Actinidia chinensis HOM05D007062 ORTHO05D008941 6.0e-75 285.0 278 82.4
Nitab4.5_0000993g0090 Nicotiana tabacum HOM05D007062 ORTHO05D008941 1.1e-73 280.8 278 79.9
CAN.G1217.21 Capsicum annuum HOM05D007062 ORTHO05D008941 4.3e-73 278.9 278 77.7
CiPaw.12G106400 Carya illinoinensis HOM05D007062 ORTHO05D008941 2.8e-72 276.2 288 77.4
Nitab4.5_0005649g0010 Nicotiana tabacum HOM05D007062 ORTHO05D008941 8.2e-72 274.6 278 79.1
Peaxi162Scf00002g00075 Petunia axillaris HOM05D007062 ORTHO05D008941 8.2e-72 274.6 278 75.9
SalBow6G7097 Salvia bowleyana HOM05D007062 ORTHO05D008941 1.4e-71 273.9 279 79.9
PGSC0003DMG400004788 Solanum tuberosum HOM05D007062 ORTHO05D008941 1.8e-71 273.5 278 77.7
Sopen08g027570 Solanum pennellii HOM05D007062 ORTHO05D008941 3.1e-71 272.7 278 79.1
TAR375G0275 Trochodendron aralioides HOM05D007062 ORTHO05D008941 1.5e-70 270.4 278 77.7
Solyc08g079110.4 Solanum lycopersicum HOM05D007062 ORTHO05D008941 4.5e-70 268.9 278 78.8
Glyma.11G030700 Glycine max HOM05D007062 ORTHO05D008941 7.7e-70 268.1 279 78.9
Lj2g0026876 Lotus japonicus HOM05D007062 ORTHO05D008941 1.0e-69 267.7 276 79.0
Migut.A00806 Erythranthe guttata HOM05D007062 ORTHO05D008941 1.7e-69 266.9 281 75.4
Lsat_1_v5_gn_6_2361 Lactuca sativa HOM05D007062 ORTHO05D008941 2.9e-69 266.2 283 77.4
Cpa.g.sc29.119 Carica papaya HOM05D007062 ORTHO05D008941 3.8e-69 265.8 279 76.7
MSTRG.25539 Avicennia marina HOM05D007062 ORTHO05D008941 6.5e-69 265.0 279 68.1
Prupe.5G075900 Prunus persica HOM05D007062 ORTHO05D008941 8.5e-69 264.6 292 71.2
Phvul.002G061100 Phaseolus vulgaris HOM05D007062 ORTHO05D008941 1.9e-68 263.5 291 74.2
Cc08_g12960 Coffea canephora HOM05D007062 ORTHO05D008941 2.5e-68 263.1 279 77.8
GSVIVG01001267001 Vitis vinifera HOM05D007062 ORTHO05D008941 4.2e-68 262.3 267 79.4
Manes.01G076100 Manihot esculenta HOM05D007062 ORTHO05D008941 2.1e-67 260.0 289 69.6
VMungo1215G0274 Vigna mungo HOM05D007062 ORTHO05D008941 2.1e-67 260.0 292 74.7
TPR.G25898 Trifolium pratense HOM05D007062 ORTHO05D008941 4.6e-67 258.8 278 77.7
arahy.Tifrunner.gnm1.ann1.06MV4V Arachis hypogaea HOM05D007062 ORTHO05D008941 3.0e-66 256.1 236 84.7
arahy.Tifrunner.gnm1.ann1.FU46H2 Arachis hypogaea HOM05D007062 ORTHO05D008941 3.0e-66 256.1 236 84.7
QL12p014002 Quercus lobata HOM05D007062 ORTHO05D008941 3.0e-66 256.1 320 49.4
Atru.chr9.1388 Acer truncatum HOM05D007062 ORTHO05D008941 3.9e-66 255.8 279 77.8
RcHm_v2.0_Chr7g0202221 Rosa chinensis HOM05D007062 ORTHO05D008941 2.0e-65 253.4 289 73.7
Lalb_Chr16g0379721 Lupinus albus HOM05D007062 ORTHO05D008941 2.5e-65 253.1 222 88.3
Sed0027513 Sechium edule HOM05D007062 ORTHO05D008941 2.5e-65 253.1 277 75.8
Gohir.D08G190800 Gossypium hirsutum HOM05D007062 ORTHO05D008941 3.3e-65 252.7 289 68.9
Duzib205G0297 Durio zibethinus HOM05D007062 ORTHO05D008941 4.3e-65 252.3 290 73.4
Ciclev10021545m.g Citrus clementina HOM05D007062 ORTHO05D008941 7.4e-65 251.5 292 73.6
Eucgr.D02028 Eucalyptus grandis HOM05D007062 ORTHO05D008941 1.3e-64 250.8 257 63.4
SGA_v2.0_scaffold120G32845 Striga asiatica HOM05D007062 ORTHO05D008941 2.8e-64 249.6 281 77.2
Thecc.03G257500 Theobroma cacao HOM05D007062 ORTHO05D008941 1.4e-63 247.3 294 68.0
Gorai.004G200900 Gossypium raimondii HOM05D007062 ORTHO05D008941 2.4e-63 246.5 289 64.4
Potri.003G112900 Populus trichocarpa HOM05D007062 ORTHO05D008941 2.4e-63 246.5 291 68.7
ClCG01G003790 Citrullus lanatus HOM05D007062 ORTHO05D008941 3.1e-63 246.1 282 73.4
MELO3C005562.2 Cucumis melo HOM05D007062 ORTHO05D008941 3.1e-63 246.1 282 72.0
ECA232G1654 Erigeron canadensis HOM05D007062 ORTHO05D008941 3.1e-63 246.1 287 72.5
CsaV3_5G003940 Cucumis sativus L. HOM05D007062 ORTHO05D008941 4.1e-63 245.7 282 71.6
PGR031G1282 Punica granatum HOM05D007062 ORTHO05D008941 4.1e-63 245.7 275 64.7
Medtr5g012110 Medicago truncatula HOM05D007062 ORTHO05D008941 5.3e-63 245.4 265 76.2
PSO063G0503 Papaver somniferum HOM05D007062 ORTHO05D008941 1.5e-62 243.8 283 75.6
THA.LOC104818475 Tarenaya hassleriana HOM05D007062 ORTHO05D008941 1.5e-62 243.8 287 69.0
FvH4_5g00330 Fragaria vesca HOM05D007062 ORTHO05D008941 2.0e-62 243.4 292 73.3
CANSAT21G0465 Cannabis sativa HOM05D007062 ORTHO05D008941 5.9e-62 241.9 281 73.0
TWI60G0310 Tripterygium wilfordii HOM05D007062 ORTHO05D008941 5.9e-62 241.9 219 87.7
HanXRQChr02g0049591 Helianthus annuus HOM05D007062 ORTHO05D008941 7.7e-62 241.5 311 69.5
HPP92_003260 Vanilla planifolia HOM05D007062 ORTHO05D008941 7.7e-62 241.5 265 75.5
FAN08G1089 Fragaria x ananassa HOM05D007062 ORTHO05D008941 2.2e-61 240.0 305 70.5
FAN18G0001 Fragaria x ananassa HOM05D007062 ORTHO05D008941 2.2e-61 240.0 305 70.5
MD06G1065500 Malus domestica HOM05D007062 ORTHO05D008941 2.2e-61 240.0 293 72.4
Ah.02g116970 Amaranthus hybridus HOM05D007062 ORTHO05D008941 2.9e-61 239.6 280 72.5
Thhalv10008422m.g Eutrema salsugineum HOM05D007062 ORTHO05D008941 2.9e-61 239.6 290 71.7
C08p47500 Brassica napus HOM05D007062 ORTHO05D008941 5.0e-61 238.8 284 72.9
PSO782G2909 Papaver somniferum HOM05D007062 ORTHO05D008941 6.5e-61 238.4 291 71.1
BcaC07g42568 Brassica carinata HOM05D007062 ORTHO05D008941 1.9e-60 236.9 289 72.7
Sc06g0007370 Simmondsia chinensis HOM05D007062 ORTHO05D008941 1.9e-60 236.9 278 72.3
Sp1g10870 Schrenkiella parvula HOM05D007062 ORTHO05D008941 2.5e-60 236.5 290 71.4
BcaC07g41714 Brassica carinata HOM05D007062 ORTHO05D008941 7.2e-60 235.0 284 72.5
Aa31LG1G2430 Aethionema arabicum HOM05D007062 ORTHO05D008941 9.4e-60 234.6 298 59.1
Aqoxy5G03933 Aquilegia oxysepala HOM05D007062 ORTHO05D008941 1.2e-59 234.2 283 73.5
AL1G23540 Arabidopsis lyrata HOM05D007062 ORTHO05D008941 2.7e-59 233.0 290 69.3
A09p63980 Brassica napus HOM05D007062 ORTHO05D008941 2.7e-59 233.0 285 72.3
BolC8t52291H Brassica oleracea HOM05D007062 ORTHO05D008941 2.7e-59 233.0 289 72.3
Carub.0001s1193 Capsella rubella HOM05D007062 ORTHO05D008941 2.7e-59 233.0 290 69.7
BraA09t41747Z Brassica rapa HOM05D007062 ORTHO05D008941 6.1e-59 231.9 289 71.3
AT1G12250 Arabidopsis thaliana HOM05D007062 ORTHO05D008941 1.0e-58 231.1 290 69.3
Hund11577 Selenicereus undatus HOM05D007062 ORTHO05D008941 1.0e-58 231.1 281 69.8
Zm00001eb248670 Zea mays HOM05D007062 ORTHO05D008941 2.3e-58 229.9 219 83.1
SEGI_22381 Sequoiadendron giganteum HOM05D007062 ORTHO05D008941 2.0e-57 226.9 264 73.9
EL10Ac5g13006 Beta vulgaris HOM05D007062 ORTHO05D008941 7.4e-57 224.9 280 58.6
Os02g0643500 Oryza sativa ssp. japonica HOM05D007062 ORTHO05D008941 2.2e-56 223.4 215 73.5
vmacro05405 Vaccinium macrocarpon HOM05D007062 ORTHO05D008941 2.8e-56 223.0 196 88.8
FAN04G1528 Fragaria x ananassa HOM05D007062 ORTHO05D008941 8.2e-56 221.5 259 55.2
ATR0568G204 Amborella trichopoda HOM05D007062 ORTHO05D008941 2.4e-55 219.9 196 89.8
Mapoly0083s0077 Marchantia polymorpha HOM05D007062 ORTHO05D008941 7.7e-54 214.9 236 66.1
Sabra03G0078200 Salix brachista HOM05D007062 ORTHO05D008941 6.5e-53 211.8 374 42.8
Gohir.A08G172400 Gossypium hirsutum HOM05D007062 ORTHO05D008941 2.1e-51 206.8 193 76.7
AUR62007471 Chenopodium quinoa HOM05D007062 ORTHO05D008941 3.3e-49 199.5 182 84.1
SMO137G0193 Selaginella moellendorffii HOM05D007062 ORTHO05D008941 1.3e-48 197.6 217 66.8
CBR_g19734 Chara braunii HOM05D007062 ORTHO05D008941 6.3e-48 195.3 208 67.8
Pp3c21_17930 Physcomitrium patens HOM05D007062 ORTHO05D008941 2.9e-45 186.4 211 74.9
FAN13G1422 Fragaria x ananassa HOM05D007062 ORTHO05D008941 2.0e-41 173.7 222 52.3
Hma1.2p1_1691F.1_g297810 Hydrangea macrophylla HOM05D007062 ORTHO05D008941 2.2e-40 170.2 86 93.0
COL.COLO4_37223 Corchorus olitorius HOM05D007062 ORTHO05D008941 6.3e-40 168.7 88 89.8
Hma1.2p1_1691F.1_g297800 Hydrangea macrophylla HOM05D007062 ORTHO05D008941 6.3e-40 168.7 85 92.9
Glyma.01G211100 Glycine max HOM05D007062 ORTHO05D008941 2.0e-38 163.7 246 47.6
AUR62039929 Chenopodium quinoa HOM05D007062 ORTHO05D008941 1.0e-37 161.4 88 85.2
AUR62043761 Chenopodium quinoa HOM05D007062 ORTHO05D008941 1.0e-37 161.4 88 85.2
DCAR_004919 Daucus carota HOM05D007062 ORTHO05D008941 3.8e-37 159.5 88 87.5
CDE04G1356 Ceratophyllum demersum HOM05D007062 ORTHO05D008941 8.5e-37 158.3 85 87.1
Cfa012777 Carpinus fangiana HOM05D007062 ORTHO05D008941 1.2e-35 154.5 219 76.3
CARHR012560 Cardamine hirsuta HOM05D007062 ORTHO05D008941 4.7e-35 152.5 85 83.5
Dinv39100 Davidia involucrata HOM05D007062 ORTHO05D008941 1.8e-34 150.6 182 58.2
GSVIVG01001268001 Vitis vinifera HOM05D007062 ORTHO05D008941 7.2e-28 128.6 96 69.8
AagrBONN_evm.TU.Sc2ySwM_228.1920 Anthoceros agrestis HOM05D000741 ORTHO05D000506 1.2e-27 127.9 177 67.2
Psat2g178680 Pisum sativum HOM05D007062 ORTHO05D008941 3.0e-26 123.2 214 70.6
Nn6g34047 Nelumbo nucifera HOM05D007062 ORTHO05D008941 1.3e-24 117.9 127 56.7
Haze_08582 Corylus avellana HOM05D007062 ORTHO05D008941 1.7e-24 117.5 142 61.3
CDE04G0607 Ceratophyllum demersum HOM05D007062 ORTHO05D008941 1.1e-20 104.8 68 73.5
CAN.G1293.1 Capsicum annuum HOM05D007062 ORTHO05D008941 1.4e-18 97.8 71 67.6
COL.COLO4_37221 Corchorus olitorius HOM05D007062 ORTHO05D008941 3.7e-16 89.7 55 78.2
Cre17.g721700 Chlamydomonas reinhardtii HOM05D007062 ORTHO05D008941 3.5e-14 83.2 185 48.1
Lj8A257G61 Lonicera japonica HOM05D007062 ORTHO05D008941 4.6e-14 82.8 45 88.9
MCO12G419 Micromonas commoda HOM05D007062 ORTHO05D008941 6.8e-10 68.9 44 70.5
Rhsim10G0100700 Rhododendron simsii HOM05D000726 ORTHO05D007554 2.0e-09 67.4 94 50.0
SEGI_25676 Sequoiadendron giganteum HOM05D007062 ORTHO05D008941 9.8e-09 65.1 54 64.8
MCO04G309 Micromonas commoda HOM05D007062 ORTHO05D008941 4.1e-07 59.7 52 53.8


User provided reference genes

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