Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040587 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 0.0e+00 1539.6 766 100.0
vmacro14139 Vaccinium macrocarpon HOM05D004501 ORTHO05D004944 1.2e-266 923.3 739 67.1
Rhsim07G0115200 Rhododendron simsii HOM05D004501 ORTHO05D004944 2.1e-266 922.5 749 66.0
Hma1.2p1_1196F.1_g265990 Hydrangea macrophylla HOM05D004501 ORTHO05D004944 2.3e-257 892.5 715 64.9
Dinv21665 Davidia involucrata HOM05D004501 ORTHO05D004944 1.3e-249 866.7 717 66.2
GSVIVG01005813001 Vitis vinifera HOM05D004501 ORTHO05D004944 7.9e-242 840.9 751 61.0
Actinidia02160 Actinidia chinensis HOM05D004501 ORTHO05D004944 4.5e-229 798.5 688 64.0
Lj2C224T11 Lonicera japonica HOM05D004501 ORTHO05D004944 8.2e-223 777.7 724 59.8
QL12p011237 Quercus lobata HOM05D004501 ORTHO05D004944 8.2e-215 751.1 739 56.3
CSS0032615 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 1.5e-213 746.9 655 62.3
Haze_07939 Corylus avellana HOM05D004501 ORTHO05D004944 1.5e-213 746.9 727 57.2
CiPaw.11G082400 Carya illinoinensis HOM05D004501 ORTHO05D004944 1.7e-212 743.4 755 55.1
Cfa012694 Carpinus fangiana HOM05D004501 ORTHO05D004944 4.7e-210 735.3 727 56.8
Atru.chr9.1263 Acer truncatum HOM05D004501 ORTHO05D004944 2.3e-209 733.0 753 54.8
CiPaw.12G049700 Carya illinoinensis HOM05D004501 ORTHO05D004944 1.3e-207 727.2 736 56.0
Ciclev10018712m.g Citrus clementina HOM05D004501 ORTHO05D004944 6.3e-207 724.9 754 55.0
Thecc.03G247200 Theobroma cacao HOM05D004501 ORTHO05D004944 1.4e-206 723.8 739 55.2
Prupe.5G064600 Prunus persica HOM05D004501 ORTHO05D004944 2.0e-205 719.9 748 54.0
MD04G1060900 Malus domestica HOM05D004501 ORTHO05D004944 3.5e-205 719.2 748 53.2
PGSC0003DMG400026239 Solanum tuberosum HOM05D004501 ORTHO05D004944 1.0e-204 717.6 732 55.9
Manes.01G084200 Manihot esculenta HOM05D004501 ORTHO05D004944 5.0e-204 715.3 732 55.2
Potri.001G155200 Populus trichocarpa HOM05D004501 ORTHO05D004944 4.7e-202 708.8 710 55.4
Sabra03G0049600 Salix brachista HOM05D004501 ORTHO05D004944 1.0e-201 707.6 694 56.2
Potri.003G079700 Populus trichocarpa HOM05D004501 ORTHO05D004944 4.0e-201 705.7 711 55.3
Solyc08g078320.3 Solanum lycopersicum HOM05D004501 ORTHO05D004944 8.8e-201 704.5 732 55.3
Peaxi162Scf00346g00112 Petunia axillaris HOM05D004501 ORTHO05D004944 2.0e-200 703.4 725 54.6
Nitab4.5_0010602g0010 Nicotiana tabacum HOM05D004501 ORTHO05D004944 9.7e-200 701.0 728 54.4
TWI15G0617 Tripterygium wilfordii HOM05D004501 ORTHO05D004944 1.3e-199 700.7 758 52.2
FAN08G1352 Fragaria x ananassa HOM05D004501 ORTHO05D004944 2.2e-199 699.9 753 51.8
Sopen08g026820 Solanum pennellii HOM05D004501 ORTHO05D004944 3.7e-199 699.1 732 54.9
Duzib205G0832 Durio zibethinus HOM05D004501 ORTHO05D004944 1.1e-198 697.6 743 55.2
RcHm_v2.0_Chr7g0204151 Rosa chinensis HOM05D004501 ORTHO05D004944 1.4e-198 697.2 753 51.9
FAN13G2915 Fragaria x ananassa HOM05D004501 ORTHO05D004944 5.3e-198 695.3 748 51.9
FvH4_5g19540 Fragaria vesca HOM05D004501 ORTHO05D004944 1.2e-197 694.1 753 51.7
FAN18G4013 Fragaria x ananassa HOM05D004501 ORTHO05D004944 2.9e-196 689.5 748 51.6
Nn1g00910 Nelumbo nucifera HOM05D004501 ORTHO05D004944 1.4e-193 680.6 739 52.2
Cc08_g12070 Coffea canephora HOM05D004501 ORTHO05D004944 1.8e-193 680.2 727 54.5
Actinidia14399 Actinidia chinensis HOM05D004501 ORTHO05D004944 3.0e-193 679.5 702 56.1
COL.COLO4_37109 Corchorus olitorius HOM05D004501 ORTHO05D004944 4.0e-193 679.1 742 53.2
Duzib068G0690 Durio zibethinus HOM05D004501 ORTHO05D004944 1.7e-191 673.7 712 53.4
Gorai.008G233400 Gossypium raimondii HOM05D004501 ORTHO05D004944 2.4e-190 669.8 736 53.1
Gohir.A12G215200 Gossypium hirsutum HOM05D004501 ORTHO05D004944 7.0e-190 668.3 735 52.8
Eucgr.E00402 Eucalyptus grandis HOM05D004501 ORTHO05D004944 1.6e-189 667.2 719 52.9
Gohir.D12G217800 Gossypium hirsutum HOM05D004501 ORTHO05D004944 5.9e-189 665.2 736 52.7
CAN.G1178.8 Capsicum annuum HOM05D004501 ORTHO05D004944 1.3e-188 664.1 732 52.9
CANSAT21G1630 Cannabis sativa HOM05D004501 ORTHO05D004944 3.8e-188 662.5 741 51.3
Sabra01G0124800 Salix brachista HOM05D004501 ORTHO05D004944 6.6e-188 661.8 721 52.3
Gohir.A03G006500 Gossypium hirsutum HOM05D004501 ORTHO05D004944 3.3e-187 659.4 646 56.2
Hund14524 Selenicereus undatus HOM05D004501 ORTHO05D004944 4.2e-187 659.1 751 50.5
Sc01g0008260 Simmondsia chinensis HOM05D004501 ORTHO05D004944 7.2e-187 658.3 709 52.6
Gorai.003G175400 Gossypium raimondii HOM05D004501 ORTHO05D004944 1.2e-186 657.5 683 53.9
AUR62019990 Chenopodium quinoa HOM05D004501 ORTHO05D004944 1.6e-186 657.1 744 50.0
Oeu027013.1 Olea europaea HOM05D004501 ORTHO05D004944 3.0e-185 652.9 693 53.7
EL10Ac5g12334 Beta vulgaris HOM05D004501 ORTHO05D004944 1.2e-184 651.0 748 50.0
PGR042G0255 Punica granatum HOM05D004501 ORTHO05D004944 2.0e-184 650.2 730 50.8
Gohir.D03G165700 Gossypium hirsutum HOM05D004501 ORTHO05D004944 3.4e-184 649.4 683 53.9
AUR62007118 Chenopodium quinoa HOM05D004501 ORTHO05D004944 1.8e-182 643.7 741 49.3
Psat2g176440 Pisum sativum HOM05D004501 ORTHO05D004944 1.0e-180 637.9 750 48.7
Medtr5g012940 Medicago truncatula HOM05D004501 ORTHO05D004944 1.3e-180 637.5 748 49.1
Nitab4.5_0001590g0040 Nicotiana tabacum HOM05D004501 ORTHO05D004944 2.3e-180 636.7 739 50.1
PSO675G3024 Papaver somniferum HOM05D004501 ORTHO05D004944 2.3e-180 636.7 762 49.5
ClCG01G004260 Citrullus lanatus HOM05D004501 ORTHO05D004944 3.8e-180 636.0 773 48.6
MELO3C005513.2 Cucumis melo HOM05D004501 ORTHO05D004944 6.6e-180 635.2 739 49.5
PSO732G0005 Papaver somniferum HOM05D004501 ORTHO05D004944 6.6e-180 635.2 739 51.0
Sed0022861 Sechium edule HOM05D004501 ORTHO05D004944 9.5e-179 631.3 732 51.0
VMungo1215G1578 Vigna mungo HOM05D004501 ORTHO05D004944 2.8e-178 629.8 722 50.4
Aqoxy7G03746 Aquilegia oxysepala HOM05D004501 ORTHO05D004944 3.6e-178 629.4 746 51.1
Lalb_Chr16g0379471 Lupinus albus HOM05D004501 ORTHO05D004944 3.6e-178 629.4 746 47.7
DCAR_020178 Daucus carota HOM05D004501 ORTHO05D004944 8.0e-178 628.2 664 53.8
Ca_24594_v3 Cicer arietinum L. HOM05D004501 ORTHO05D004944 8.9e-177 624.8 737 49.0
Lalb_Chr09g0324311 Lupinus albus HOM05D004501 ORTHO05D004944 8.9e-177 624.8 752 47.7
arahy.Tifrunner.gnm1.ann1.0753T9 Arachis hypogaea HOM05D004501 ORTHO05D004944 4.4e-176 622.5 744 48.5
arahy.Tifrunner.gnm1.ann1.F6SWGC Arachis hypogaea HOM05D004501 ORTHO05D004944 4.4e-176 622.5 744 48.5
THA.LOC104810067 Tarenaya hassleriana HOM05D004501 ORTHO05D004944 9.8e-176 621.3 728 49.0
Glyma.01G207400 Glycine max HOM05D004501 ORTHO05D004944 1.7e-175 620.5 729 48.8
TPR.G18132 Trifolium pratense HOM05D004501 ORTHO05D004944 1.9e-174 617.1 726 48.8
ECA240G3755 Erigeron canadensis HOM05D004501 ORTHO05D004944 7.0e-174 615.1 714 51.1
MSTRG.12127 Avicennia marina HOM05D004501 ORTHO05D004944 1.6e-173 614.0 510 62.2
Phvul.002G056400 Phaseolus vulgaris HOM05D004501 ORTHO05D004944 2.0e-173 613.6 725 49.8
Sed0003847 Sechium edule HOM05D004501 ORTHO05D004944 2.7e-173 613.2 739 49.8
Glyma.11G035800 Glycine max HOM05D004501 ORTHO05D004944 1.0e-172 611.3 733 48.7
CsaV3_5G004460 Cucumis sativus L. HOM05D004501 ORTHO05D004944 1.7e-172 610.5 738 48.6
Ah.12g054390 Amaranthus hybridus HOM05D004501 ORTHO05D004944 2.5e-171 606.7 755 46.8
Lj2g0006235 Lotus japonicus HOM05D004501 ORTHO05D004944 1.6e-170 604.0 721 48.0
HanXRQChr03g0088961 Helianthus annuus HOM05D004501 ORTHO05D004944 2.3e-169 600.1 719 49.7
Lsat_1_v5_gn_6_93441 Lactuca sativa HOM05D004501 ORTHO05D004944 1.1e-166 591.3 703 49.5
HanXRQChr13g0417701 Helianthus annuus HOM05D004501 ORTHO05D004944 4.1e-166 589.3 719 50.2
CARHR134700 Cardamine hirsuta HOM05D004501 ORTHO05D004944 3.0e-164 583.2 718 47.4
SalBow6G6502 Salvia bowleyana HOM05D004501 ORTHO05D004944 8.6e-164 581.6 507 59.6
Migut.A01144 Erythranthe guttata HOM05D004501 ORTHO05D004944 3.6e-162 576.2 510 59.2
Thhalv10016197m.g Eutrema salsugineum HOM05D004501 ORTHO05D004944 3.1e-161 573.2 740 46.6
A04p30230 Brassica napus HOM05D004501 ORTHO05D004944 1.2e-160 571.2 723 46.6
Carub.0004s2192 Capsella rubella HOM05D004501 ORTHO05D004944 1.5e-160 570.9 721 47.4
C04p67630 Brassica napus HOM05D004501 ORTHO05D004944 2.0e-160 570.5 730 46.4
Aa31LG5G19800 Aethionema arabicum HOM05D004501 ORTHO05D004944 2.9e-159 566.6 740 45.3
AL4G37360 Arabidopsis lyrata HOM05D004501 ORTHO05D004944 6.4e-159 565.5 744 45.8
Sp4g22100 Schrenkiella parvula HOM05D004501 ORTHO05D004944 4.1e-158 562.8 730 45.9
AT2G39810 Arabidopsis thaliana HOM05D004501 ORTHO05D004944 5.4e-158 562.4 724 45.7
BcaB02g09084 Brassica carinata HOM05D004501 ORTHO05D004944 1.0e-156 558.1 723 46.5
SGA_v2.0_scaffold104G30193 Striga asiatica HOM05D004501 ORTHO05D004944 1.3e-156 557.8 511 58.7
BolC4t28262H Brassica oleracea HOM05D004501 ORTHO05D004944 1.7e-156 557.4 749 45.1
BraA04t18485Z Brassica rapa HOM05D004501 ORTHO05D004944 1.7e-156 557.4 749 45.1
ATR1145G029 Amborella trichopoda HOM05D004501 ORTHO05D004944 3.9e-156 556.2 773 44.8
BcaB01g03573 Brassica carinata HOM05D004501 ORTHO05D004944 1.7e-151 540.8 722 45.3
BolC3t15027H Brassica oleracea HOM05D004501 ORTHO05D004944 1.0e-148 531.6 560 52.1
BcaC01g05462 Brassica carinata HOM05D004501 ORTHO05D004944 1.7e-148 530.8 591 49.6
Rhsim13G0032200 Rhododendron simsii HOM05D004501 ORTHO05D004944 1.1e-139 501.5 399 68.2
CDE11G0214 Ceratophyllum demersum HOM05D004501 ORTHO05D004944 1.5e-139 501.1 543 50.6
C03p26410 Brassica napus HOM05D004501 ORTHO05D004944 3.0e-132 476.9 606 46.7
MD06G1054200 Malus domestica HOM05D004501 ORTHO05D004944 5.5e-126 456.1 491 52.5
TAR374G0951 Trochodendron aralioides HOM05D004501 ORTHO05D004944 4.3e-123 446.4 503 51.7
SEGI_38311 Sequoiadendron giganteum HOM05D004501 ORTHO05D004944 8.4e-119 432.2 502 47.6
CDE02G3094 Ceratophyllum demersum HOM05D004501 ORTHO05D004944 2.3e-116 424.1 717 41.0
Os03g0737200 Oryza sativa ssp. japonica HOM05D004501 ORTHO05D004944 3.0e-116 423.7 579 43.9
HPP92_002600 Vanilla planifolia HOM05D004501 ORTHO05D004944 5.7e-115 419.5 655 40.5
Zm00001eb215300 Zea mays HOM05D004501 ORTHO05D004944 1.4e-113 414.8 762 37.0
Zm00001eb056470 Zea mays HOM05D004501 ORTHO05D004944 2.5e-110 404.1 766 37.5
Mapoly0088s0017 Marchantia polymorpha HOM05D004501 ORTHO05D004944 6.7e-92 342.8 606 36.5
AagrBONN_evm.TU.Sc2ySwM_368.3343 Anthoceros agrestis HOM05D004501 ORTHO05D004944 1.7e-87 328.2 480 41.2
Dinv39174 Davidia involucrata HOM05D004501 ORTHO05D004944 2.2e-87 327.8 251 69.3
Pp3c10_5410 Physcomitrium patens HOM05D004501 ORTHO05D004944 6.5e-87 326.2 465 41.5
Pp3c24_4970 Physcomitrium patens HOM05D004501 ORTHO05D004944 8.8e-84 315.8 493 39.1
unitig_0.g1052 Utricularia gibba HOM05D004501 ORTHO05D004944 9.1e-81 305.8 298 54.4
SMO356G0217 Selaginella moellendorffii HOM05D004501 ORTHO05D004944 3.4e-75 287.3 433 39.5
TAR374G0010 Trochodendron aralioides HOM05D004501 ORTHO05D004944 6.3e-74 283.1 239 61.1
Cpa.g.sc776.4 Carica papaya HOM05D004501 ORTHO05D004944 3.1e-73 280.8 248 61.7
BolC4t22385H Brassica oleracea HOM05D004501 ORTHO05D004944 1.0e-68 265.8 246 55.3
CBR_g20363 Chara braunii HOM05D004501 ORTHO05D004944 9.5e-54 216.1 495 31.3
HanXRQChr15g0495741 Helianthus annuus HOM05D004501 ORTHO05D004944 2.1e-45 188.3 178 58.4
CAN.G26.29 Capsicum annuum HOM05D004501 ORTHO05D004944 7.1e-41 173.3 199 52.8
CAN.G201.38 Capsicum annuum HOM05D004501 ORTHO05D004944 1.4e-36 159.1 186 52.2
C04p07690 Brassica napus HOM05D004501 ORTHO05D004944 5.8e-35 153.7 187 44.4
Cpa.g.sc776.3 Carica papaya HOM05D004501 ORTHO05D004944 4.8e-21 107.5 290 34.5
PRCOL_00000429 Prasinoderma coloniale HOM05D004501 ORTHO05D004944 1.5e-19 102.4 242 31.4
BcaC02g12114 Brassica carinata HOM05D004501 ORTHO05D023925 1.6e-16 92.4 304 29.9
Sed0019349 Sechium edule HOM05D004501 ORTHO05D004944 3.3e-14 84.7 93 47.3
MD06G1054400 Malus domestica HOM05D004501 ORTHO05D004944 3.1e-12 78.2 66 63.6
SHI29866 Sapria himalayana HOM05D004501 ORTHO05D004944 1.3e-07 62.8 56 62.5
Zm00001eb142020 Zea mays HOM05D004501 ORTHO05D004944 7.4e-06 57.0 77 42.9


User provided reference genes

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