Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040532 Camellia sinensis var. sinensis HOM05D005759 ORTHO05D007172 5.6e-153 544.3 280 100.0
CSS0028406 Camellia sinensis var. sinensis HOM05D005759 ORTHO05D007172 2.1e-123 446.0 240 97.5
Actinidia34708 Actinidia chinensis HOM05D005759 ORTHO05D007172 1.7e-93 346.7 240 73.8
Dinv31290 Davidia involucrata HOM05D005759 ORTHO05D007172 3.2e-84 315.8 241 68.0
Rhsim09G0144200 Rhododendron simsii HOM05D005759 ORTHO05D007172 8.8e-82 307.8 238 67.2
RhsimUnG0061600 Rhododendron simsii HOM05D005759 ORTHO05D007172 8.8e-82 307.8 238 67.2
TAR623G0127 Trochodendron aralioides HOM05D005759 ORTHO05D007172 1.2e-70 270.8 241 60.6
Hma1.2p1_0352F.1_g133040 Hydrangea macrophylla HOM05D005759 ORTHO05D007172 5.0e-69 265.4 230 60.0
Thecc.10G099000 Theobroma cacao HOM05D005759 ORTHO05D007172 2.3e-66 256.5 237 58.6
Actinidia31089 Actinidia chinensis HOM05D005759 ORTHO05D007172 4.8e-64 248.8 200 66.0
Cfa011218 Carpinus fangiana HOM05D005759 ORTHO05D007172 4.1e-63 245.7 240 56.2
vmacro10276 Vaccinium macrocarpon HOM05D005759 ORTHO05D007172 4.1e-63 245.7 238 59.2
Duzib114G0077 Durio zibethinus HOM05D005759 ORTHO05D007172 8.5e-61 238.0 273 50.2
CiPaw.13G035800 Carya illinoinensis HOM05D005759 ORTHO05D007172 1.5e-60 237.3 240 54.2
Gohir.D10G206700 Gossypium hirsutum HOM05D005759 ORTHO05D007172 6.1e-59 231.9 235 54.0
Haze_02624 Corylus avellana HOM05D005759 ORTHO05D007172 8.0e-59 231.5 270 50.4
Gorai.011G232200 Gossypium raimondii HOM05D005759 ORTHO05D007172 5.2e-58 228.8 235 53.6
MD07G1072000 Malus domestica HOM05D005759 ORTHO05D007172 1.5e-57 227.3 238 54.6
Manes.07G091866 Manihot esculenta HOM05D005759 ORTHO05D007172 2.6e-57 226.5 242 52.9
Sed0025588 Sechium edule HOM05D005759 ORTHO05D007172 7.5e-57 224.9 285 47.4
QL04p040912 Quercus lobata HOM05D005759 ORTHO05D007172 6.3e-56 221.9 230 53.9
Sabra10G0181400 Salix brachista HOM05D005759 ORTHO05D007172 1.1e-55 221.1 259 51.4
Cpa.g.sc720.1 Carica papaya HOM05D005759 ORTHO05D007172 2.4e-55 219.9 236 52.1
Potri.010G234000 Populus trichocarpa HOM05D005759 ORTHO05D007172 2.0e-54 216.9 234 53.0
ClCG08G008080 Citrullus lanatus HOM05D005759 ORTHO05D007172 2.7e-54 216.5 271 48.3
Nn2g13981 Nelumbo nucifera HOM05D005759 ORTHO05D007172 2.7e-54 216.5 240 50.4
COL.COLO4_35597 Corchorus olitorius HOM05D005759 ORTHO05D007172 3.8e-53 212.6 234 50.4
MD02G1244900 Malus domestica HOM05D005759 ORTHO05D007172 1.5e-52 210.7 232 51.3
RcHm_v2.0_Chr1g0334181 Rosa chinensis HOM05D005759 ORTHO05D007172 2.5e-52 209.9 239 50.6
Phvul.007G245100 Phaseolus vulgaris HOM05D005759 ORTHO05D007172 1.0e-50 204.5 238 47.5
MELO3C019880.2 Cucumis melo HOM05D005759 ORTHO05D007172 2.3e-50 203.4 272 46.7
arahy.Tifrunner.gnm1.ann1.0Q505S Arachis hypogaea HOM05D005759 ORTHO05D007172 4.0e-50 202.6 243 46.1
Glyma.02G165400 Glycine max HOM05D005759 ORTHO05D007172 5.7e-49 198.7 238 45.8
VMungo0720G2821 Vigna mungo HOM05D005759 ORTHO05D007172 2.4e-47 193.4 238 46.2
Atru.chr12.960 Acer truncatum HOM05D005759 ORTHO05D007172 5.4e-47 192.2 199 54.8
Lj5g0004167 Lotus japonicus HOM05D005759 ORTHO05D007172 2.9e-45 186.4 231 45.0
Lalb_Chr03g0036351 Lupinus albus HOM05D005759 ORTHO05D007172 1.6e-43 180.6 238 46.6
TPR.G7613 Trifolium pratense HOM05D005759 ORTHO05D007172 2.3e-42 176.8 277 41.5
AL4G23090 Arabidopsis lyrata HOM05D005759 ORTHO05D007172 5.2e-42 175.6 232 42.7
Medtr1g050730 Medicago truncatula HOM05D005759 ORTHO05D007172 2.0e-41 173.7 231 42.4
MBI17_g30596_MAGBIO Magnolia biondii HOM05D005759 ORTHO05D007172 3.4e-41 172.9 256 41.8
Thhalv10016555m.g Eutrema salsugineum HOM05D005759 ORTHO05D007172 5.8e-41 172.2 236 42.8
C03p92620 Brassica napus HOM05D005759 ORTHO05D007172 1.7e-40 170.6 235 39.6
BcaC01g01514 Brassica carinata HOM05D005759 ORTHO05D007172 4.9e-40 169.1 235 39.1
BolC3t21576H Brassica oleracea HOM05D005759 ORTHO05D007172 8.3e-40 168.3 235 39.1
Aqoxy1G00957 Aquilegia oxysepala HOM05D005759 ORTHO05D007172 1.4e-39 167.5 230 45.2
A08p00720 Brassica napus HOM05D005759 ORTHO05D007172 1.4e-39 167.5 235 39.6
BraA08t32129Z Brassica rapa HOM05D005759 ORTHO05D007172 1.4e-39 167.5 235 39.6
PSO063G1818 Papaver somniferum HOM05D005759 ORTHO05D007172 1.4e-39 167.5 241 46.5
Psat6g094520 Pisum sativum HOM05D005759 ORTHO05D007172 7.0e-39 165.2 238 41.6
arahy.Tifrunner.gnm1.ann1.Y61W31 Arachis hypogaea HOM05D005759 ORTHO05D007172 2.0e-38 163.7 349 32.4
AT2G28600 Arabidopsis thaliana HOM05D005759 ORTHO05D007172 3.5e-38 162.9 232 40.1
Sp4g11420 Schrenkiella parvula HOM05D005759 ORTHO05D007172 7.8e-38 161.8 232 41.4
Carub.0004s0956 Capsella rubella HOM05D005759 ORTHO05D007172 5.0e-37 159.1 232 38.8
BcaB04g16965 Brassica carinata HOM05D005759 ORTHO05D007172 8.6e-37 158.3 236 38.1
Nn6g35073 Nelumbo nucifera HOM05D005759 ORTHO05D007172 1.5e-36 157.5 240 40.8
Prupe.2G090100 Prunus persica HOM05D005759 ORTHO05D007172 2.5e-36 156.8 149 55.7
THA.LOC104826349 Tarenaya hassleriana HOM05D005759 ORTHO05D007172 2.5e-36 156.8 234 41.5
CARHR121620 Cardamine hirsuta HOM05D005759 ORTHO05D007172 4.3e-36 156.0 234 36.3
Ciclev10033771m.g Citrus clementina HOM05D005759 ORTHO05D007172 2.1e-35 153.7 157 52.2
CDE04G0943 Ceratophyllum demersum HOM05D005759 ORTHO05D007172 2.0e-33 147.1 261 35.6
Aa31LG5G7620 Aethionema arabicum HOM05D005759 ORTHO05D007172 8.3e-32 141.7 255 38.8
Os12g0147500 Oryza sativa ssp. japonica HOM05D005759 ORTHO05D007172 3.9e-29 132.9 271 33.6
ATR0820G119 Amborella trichopoda HOM05D005759 ORTHO05D007172 1.1e-26 124.8 238 33.6
Zm00001eb164020 Zea mays HOM05D005759 ORTHO05D007172 1.1e-26 124.8 267 33.3
PSO339G2548 Papaver somniferum HOM05D005759 ORTHO05D007172 2.6e-25 120.2 192 42.7
Pp3c1_25970 Physcomitrium patens HOM05D005759 ORTHO05D007172 1.2e-19 101.3 267 28.1
Gorai.011G232400 Gossypium raimondii HOM05D005759 ORTHO05D007172 1.1e-18 98.2 81 59.3
Mapoly0120s0020 Marchantia polymorpha HOM05D005759 ORTHO05D007172 1.4e-18 97.8 246 28.5
CsaV3_2G032950 Cucumis sativus L. HOM05D005759 ORTHO05D007172 6.8e-18 95.5 122 51.6
Ca_11764_v3 Cicer arietinum L. HOM05D005759 ORTHO05D007172 3.2e-15 86.7 90 46.7
Eucgr.G02717 Eucalyptus grandis HOM05D005759 ORTHO05D007172 1.3e-13 81.3 82 53.7
GSVIVG01034722001 Vitis vinifera HOM05D005759 ORTHO05D007172 6.6e-13 79.0 74 59.5
GSVIVG01034723001 Vitis vinifera HOM05D005759 ORTHO05D007172 6.6e-13 79.0 74 59.5
SEGI_18985 Sequoiadendron giganteum HOM05D005759 ORTHO05D007172 4.3e-12 76.3 150 30.7
PSO170G6466 Papaver somniferum HOM05D005759 ORTHO05D007172 8.1e-11 72.0 94 48.9
AagrBONN_evm.TU.Sc2ySwM_228.2343 Anthoceros agrestis HOM05D005759 ORTHO05D007172 4.0e-10 69.7 243 26.3
Ciclev10031564m.g Citrus clementina HOM05D005759 ORTHO05D007172 3.8e-08 63.2 106 39.6
TWI38G0593 Tripterygium wilfordii HOM05D005759 ORTHO05D007172 4.9e-08 62.8 109 41.3
ATR0829G024 Amborella trichopoda HOM05D000032 ORTHO05D007444 4.2e-07 59.7 233 25.8
PSO339G3253 Papaver somniferum HOM05D005759 ORTHO05D007172 4.2e-07 59.7 107 39.3
SEGI_32992 Sequoiadendron giganteum HOM05D005759 ORTHO05D007172 4.2e-07 59.7 85 36.5
Oeu059850.1 Olea europaea HOM05D005759 ORTHO05D007172 5.4e-07 59.3 109 38.5
HanXRQChr14g0456321 Helianthus annuus HOM05D005759 ORTHO05D007172 3.5e-06 56.6 103 41.7
PSO384G4559 Papaver somniferum HOM05D005759 ORTHO05D007172 4.6e-06 56.2 77 44.2


User provided reference genes

Program Settings