Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040474 Camellia sinensis var. sinensis HOM05D000861 ORTHO05D004749 1.4e-225 786.2 455 100.0
CSS0019173 Camellia sinensis var. sinensis HOM05D000861 ORTHO05D004749 1.0e-212 743.4 434 94.2
Dinv25026 Davidia involucrata HOM05D000861 ORTHO05D004749 2.6e-152 542.7 332 79.2
Rhsim10G0079800 Rhododendron simsii HOM05D000861 ORTHO05D004749 5.0e-151 538.5 342 75.4
vmacro05483 Vaccinium macrocarpon HOM05D000861 ORTHO05D004749 2.2e-143 513.1 340 74.7
Haze_20079 Corylus avellana HOM05D000861 ORTHO05D004749 2.2e-135 486.5 328 71.6
Cc09_g02090 Coffea canephora HOM05D000861 ORTHO05D004749 4.2e-134 482.3 334 69.8
Migut.C01187 Erythranthe guttata HOM05D000861 ORTHO05D004749 6.1e-133 478.4 336 69.0
Potri.016G062900 Populus trichocarpa HOM05D000861 ORTHO05D004749 3.0e-132 476.1 330 69.1
CiPaw.09G025900 Carya illinoinensis HOM05D000861 ORTHO05D004749 5.2e-132 475.3 324 70.1
Lj1A65T56 Lonicera japonica HOM05D000861 ORTHO05D004749 5.7e-131 471.9 333 67.0
PGSC0003DMG400002212 Solanum tuberosum HOM05D000861 ORTHO05D004749 2.8e-130 469.5 365 64.1
Lj2A1153T47 Lonicera japonica HOM05D000861 ORTHO05D004749 8.2e-130 468.0 353 63.7
Lj1g0012940 Lotus japonicus HOM05D000861 ORTHO05D004749 8.2e-130 468.0 345 64.6
Solyc04g049290.2 Solanum lycopersicum HOM05D000861 ORTHO05D004749 1.6e-128 463.8 340 67.4
Sopen04g019180 Solanum pennellii HOM05D000861 ORTHO05D004749 2.0e-128 463.4 363 64.5
TAR636G3394 Trochodendron aralioides HOM05D000861 ORTHO05D004749 2.7e-128 463.0 340 65.9
RcHm_v2.0_Chr1g0331291 Rosa chinensis HOM05D000861 ORTHO05D004749 3.5e-128 462.6 313 66.8
TWI74G1428 Tripterygium wilfordii HOM05D000861 ORTHO05D004749 3.5e-128 462.6 332 69.3
Manes.08G039800 Manihot esculenta HOM05D000861 ORTHO05D004749 4.5e-128 462.2 335 67.2
FAN06G3356 Fragaria x ananassa HOM05D000861 ORTHO05D004749 1.1e-126 457.6 313 66.5
FvH4_7g05020 Fragaria vesca HOM05D000861 ORTHO05D004749 2.5e-126 456.4 313 66.1
FAN01G1629 Fragaria x ananassa HOM05D000861 ORTHO05D004749 3.2e-126 456.1 313 65.8
Psat1g222880 Pisum sativum HOM05D000861 ORTHO05D004749 3.6e-125 452.6 340 62.6
Ca_00040_v3 Cicer arietinum L. HOM05D000861 ORTHO05D004749 6.1e-125 451.8 354 60.5
Cfa006350 Carpinus fangiana HOM05D000861 ORTHO05D004749 1.0e-124 451.1 327 67.0
Haze_04427 Corylus avellana HOM05D000861 ORTHO05D004749 1.0e-124 451.1 327 67.3
Aqoxy4G02829 Aquilegia oxysepala HOM05D000861 ORTHO05D004749 1.8e-124 450.3 351 63.5
Hma1.2p1_0636F.1_g193240 Hydrangea macrophylla HOM05D000861 ORTHO05D004749 1.8e-124 450.3 279 74.2
SGA_v2.0_scaffold274G46507 Striga asiatica HOM05D000861 ORTHO05D004749 5.2e-124 448.7 325 65.8
FAN10G0630 Fragaria x ananassa HOM05D000861 ORTHO05D004749 8.8e-124 448.0 342 61.4
THA.LOC104826781 Tarenaya hassleriana HOM05D000861 ORTHO05D004749 2.6e-123 446.4 344 62.5
Nn2g14698 Nelumbo nucifera HOM05D000861 ORTHO05D004749 7.5e-123 444.9 311 66.6
vmacro22548 Vaccinium macrocarpon HOM05D000861 ORTHO05D004749 7.5e-123 444.9 341 66.3
Lalb_Chr25g0287681 Lupinus albus HOM05D000861 ORTHO05D004749 9.8e-123 444.5 317 64.4
GSVIVG01033426001 Vitis vinifera HOM05D000861 ORTHO05D004749 1.3e-122 444.1 345 64.3
Sabra16G0065200 Salix brachista HOM05D000861 ORTHO05D004749 2.2e-122 443.4 345 63.2
QL07p025600 Quercus lobata HOM05D000861 ORTHO05D004749 2.8e-122 443.0 327 67.6
CiPaw.10G023500 Carya illinoinensis HOM05D000861 ORTHO05D004749 3.7e-122 442.6 329 65.0
Hma1.2p1_0516F.1_g170530 Hydrangea macrophylla HOM05D000861 ORTHO05D004749 3.7e-122 442.6 338 67.5
VMungo1383G1884 Vigna mungo HOM05D000861 ORTHO05D004749 3.7e-122 442.6 335 63.6
Nitab4.5_0000575g0240 Nicotiana tabacum HOM05D000861 ORTHO05D004749 8.3e-122 441.4 341 63.9
Sp3g10170 Schrenkiella parvula HOM05D000861 ORTHO05D004749 1.8e-121 440.3 349 60.2
TAR633G2067 Trochodendron aralioides HOM05D000861 ORTHO05D004749 1.8e-121 440.3 343 63.8
Peaxi162Scf00072g00619 Petunia axillaris HOM05D000861 ORTHO05D004749 2.4e-121 439.9 350 62.6
Glyma.19G204100 Glycine max HOM05D000861 ORTHO05D004749 3.1e-121 439.5 351 62.7
TPR.G29255 Trifolium pratense HOM05D000861 ORTHO05D004749 5.4e-121 438.7 338 60.9
Lalb_Chr20g0111111 Lupinus albus HOM05D000861 ORTHO05D004749 1.6e-120 437.2 356 58.1
HanXRQChr12g0359061 Helianthus annuus HOM05D000861 ORTHO05D004749 4.5e-120 435.6 332 62.3
PGSC0003DMG400016019 Solanum tuberosum HOM05D000861 ORTHO05D004749 4.5e-120 435.6 323 64.7
Glyma.03G206500 Glycine max HOM05D000861 ORTHO05D004749 5.9e-120 435.3 311 66.2
CANSAT54G1949 Cannabis sativa HOM05D000861 ORTHO05D004749 1.3e-119 434.1 333 61.0
Prupe.2G061200 Prunus persica HOM05D000861 ORTHO05D004749 1.7e-119 433.7 313 64.2
ECA234G4058 Erigeron canadensis HOM05D000861 ORTHO05D004749 2.9e-119 433.0 333 61.0
CsaV3_4G031490 Cucumis sativus L. HOM05D000861 ORTHO05D004749 6.5e-119 431.8 340 60.9
Medtr1g054715 Medicago truncatula HOM05D000861 ORTHO05D004749 6.5e-119 431.8 344 59.6
Sabra06G0151900 Salix brachista HOM05D000861 ORTHO05D004749 6.5e-119 431.8 361 59.3
TPR.G2104 Trifolium pratense HOM05D000861 ORTHO05D004749 1.1e-118 431.0 316 62.7
CAN.G186.36 Capsicum annuum HOM05D000861 ORTHO05D004749 1.9e-118 430.3 312 65.4
MELO3C009074.2 Cucumis melo HOM05D000861 ORTHO05D008567 4.2e-118 429.1 339 61.1
Glyma.02G168400 Glycine max HOM05D000861 ORTHO05D004749 4.2e-118 429.1 344 60.2
Peaxi162Scf00195g00910 Petunia axillaris HOM05D000861 ORTHO05D004749 3.6e-117 426.0 334 62.0
Psat6g110040 Pisum sativum HOM05D000861 ORTHO05D004749 6.1e-117 425.2 346 59.0
TPR.G14497 Trifolium pratense HOM05D000861 ORTHO05D004749 6.1e-117 425.2 317 61.5
Ciclev10012217m.g Citrus clementina HOM05D000861 ORTHO05D004749 8.0e-117 424.9 279 71.7
Sopen04g004750 Solanum pennellii HOM05D000861 ORTHO05D004749 1.0e-116 424.5 338 61.5
Nn5g30627 Nelumbo nucifera HOM05D000861 ORTHO05D004749 1.4e-116 424.1 311 64.0
Eucgr.A02509 Eucalyptus grandis HOM05D000861 ORTHO05D004749 1.8e-116 423.7 314 65.0
RcHm_v2.0_Chr1g0331341 Rosa chinensis HOM05D000861 ORTHO05D004749 1.8e-116 423.7 284 66.2
PGR004G1046 Punica granatum HOM05D000861 ORTHO05D004749 4.0e-116 422.5 313 63.6
unitig_749.g14024 Utricularia gibba HOM05D000861 ORTHO05D004749 5.2e-116 422.2 300 65.3
Solyc04g009600.3 Solanum lycopersicum HOM05D000861 ORTHO05D004749 6.8e-116 421.8 338 61.2
Nitab4.5_0007421g0010 Nicotiana tabacum HOM05D000861 ORTHO05D004749 2.6e-115 419.9 339 61.9
arahy.Tifrunner.gnm1.ann1.BI8ZDZ Arachis hypogaea HOM05D000861 ORTHO05D004749 5.7e-115 418.7 342 57.0
arahy.Tifrunner.gnm1.ann1.9W4D6L Arachis hypogaea HOM05D000861 ORTHO05D004749 7.5e-115 418.3 342 57.0
ClCG04G000550 Citrullus lanatus HOM05D000861 ORTHO05D004749 7.5e-115 418.3 321 62.3
Aqoxy2G01335 Aquilegia oxysepala HOM05D000861 ORTHO05D004749 2.2e-114 416.8 309 63.4
Manes.09G040600 Manihot esculenta HOM05D000861 ORTHO05D004749 4.9e-114 415.6 276 69.2
Lsat_1_v5_gn_2_66000 Lactuca sativa HOM05D000861 ORTHO05D004749 6.3e-114 415.2 322 61.2
Lalb_Chr01g0017651 Lupinus albus HOM05D000861 ORTHO05D004749 1.4e-113 414.1 349 57.9
MBI01_g21127_MAGBIO Magnolia biondii HOM05D000861 ORTHO05D004749 1.4e-113 414.1 306 66.3
MSTRG.26071 Avicennia marina HOM05D000861 ORTHO05D004749 1.8e-113 413.7 341 62.5
PSO384G1311 Papaver somniferum HOM05D000861 ORTHO05D004749 1.8e-113 413.7 334 60.8
arahy.Tifrunner.gnm1.ann1.2N6KDB Arachis hypogaea HOM05D000861 ORTHO05D004749 3.1e-113 412.9 346 57.8
arahy.Tifrunner.gnm1.ann1.5F6CY5 Arachis hypogaea HOM05D000861 ORTHO05D004749 3.1e-113 412.9 340 58.2
Sabra16G0064900 Salix brachista HOM05D000861 ORTHO05D004749 3.1e-113 412.9 350 59.1
AUR62025238 Chenopodium quinoa HOM05D000861 ORTHO05D004749 7.8e-112 408.3 333 59.2
BcaB06g25559 Brassica carinata HOM05D000861 ORTHO05D004749 3.3e-110 402.9 346 56.6
Sabra16G0065500 Salix brachista HOM05D000861 ORTHO05D004749 1.0e-108 397.9 347 57.6
Nitab4.5_0008820g0010 Nicotiana tabacum HOM05D000861 ORTHO05D004749 2.3e-108 396.7 340 58.8
Dinv24029 Davidia involucrata HOM05D000861 ORTHO05D004749 4.0e-108 396.0 220 84.1
BcaC05g29310 Brassica carinata HOM05D000861 ORTHO05D004749 9.8e-107 391.3 315 59.0
VMungo0720G2154 Vigna mungo HOM05D000861 ORTHO05D004749 3.7e-106 389.4 340 54.1
Oeu003219.1 Olea europaea HOM05D000861 ORTHO05D004749 8.3e-106 388.3 346 58.7
C05p55990 Brassica napus HOM05D000861 ORTHO05D004749 1.4e-105 387.5 315 58.4
Oeu022105.1 Olea europaea HOM05D000861 ORTHO05D004749 2.4e-105 386.7 346 58.4
Phvul.007G262800 Phaseolus vulgaris HOM05D000861 ORTHO05D004749 1.6e-104 384.0 336 54.5
BraA05t22541Z Brassica rapa HOM05D000861 ORTHO05D007385 2.0e-104 383.6 345 54.5
A05p37430 Brassica napus HOM05D000861 ORTHO05D007385 2.7e-104 383.3 345 54.5
Sed0004581 Sechium edule HOM05D000861 ORTHO05D004749 7.8e-104 381.7 327 57.5
Atru.chr8.1223 Acer truncatum HOM05D000861 ORTHO05D004749 6.6e-103 378.6 318 61.6
AUR62028947 Chenopodium quinoa HOM05D000861 ORTHO05D004749 8.6e-103 378.3 391 50.4
MD02G1263700 Malus domestica HOM05D000861 ORTHO05D004749 1.5e-102 377.5 312 59.6
CARHR086500 Cardamine hirsuta HOM05D000861 ORTHO05D004749 3.3e-102 376.3 342 54.7
MD07G1054500 Malus domestica HOM05D000861 ORTHO05D004749 1.2e-101 374.4 313 58.8
Ca_26442_v3 Cicer arietinum L. HOM05D000861 ORTHO05D004749 1.6e-101 374.0 279 61.3
Duzib093G1597 Durio zibethinus HOM05D000861 ORTHO05D004749 2.8e-101 373.2 318 59.1
Phvul.001G200100 Phaseolus vulgaris HOM05D000861 ORTHO05D004749 3.6e-101 372.9 276 63.8
Duzib128G1936 Durio zibethinus HOM05D000861 ORTHO05D004749 6.2e-101 372.1 344 56.1
DCAR_027450 Daucus carota HOM05D000861 ORTHO05D004749 1.4e-100 370.9 304 60.5
Thecc.05G180600 Theobroma cacao HOM05D000861 ORTHO05D004749 2.3e-100 370.2 340 57.6
CDE05G2486 Ceratophyllum demersum HOM05D000861 ORTHO05D004749 6.8e-100 368.6 306 58.8
Oeu051191.1 Olea europaea HOM05D000861 ORTHO05D004749 1.2e-99 367.9 356 54.2
EL10Ac8g19073 Beta vulgaris HOM05D000861 ORTHO05D004749 2.6e-99 366.7 345 53.0
Aa31LG3G5570 Aethionema arabicum HOM05D000861 ORTHO05D004749 9.8e-99 364.8 313 55.3
ATR0789G014 Amborella trichopoda HOM05D000861 ORTHO05D004749 2.9e-98 363.2 281 60.1
AT3G11950 Arabidopsis thaliana HOM05D000861 ORTHO05D004749 3.7e-98 362.8 331 54.1
BcaB04g18704 Brassica carinata HOM05D000861 ORTHO05D004749 6.4e-98 362.1 241 67.6
Thhalv10020413m.g Eutrema salsugineum HOM05D000861 ORTHO05D004749 1.4e-97 360.9 342 53.5
PSO425G0018 Papaver somniferum HOM05D000861 ORTHO05D004749 9.2e-97 358.2 298 59.1
AL3G23550 Arabidopsis lyrata HOM05D000861 ORTHO05D004749 2.1e-96 357.1 342 52.3
Lj5g0002775 Lotus japonicus HOM05D000861 ORTHO05D004749 1.0e-95 354.8 342 52.9
COL.COLO4_29438 Corchorus olitorius HOM05D000861 ORTHO05D004749 8.6e-95 351.7 332 55.1
Carub.0003s1128 Capsella rubella HOM05D000861 ORTHO05D004749 2.5e-94 350.1 358 50.3
Gohir.D01G123600 Gossypium hirsutum HOM05D000861 ORTHO05D004749 1.4e-92 344.4 340 53.2
Gorai.002G154600 Gossypium raimondii HOM05D000861 ORTHO05D004749 8.9e-92 341.7 340 52.9
Gohir.A01G136400 Gossypium hirsutum HOM05D000861 ORTHO05D004749 2.0e-91 340.5 340 52.6
Nitab4.5_0000691g0150 Nicotiana tabacum HOM05D000861 ORTHO05D004749 1.3e-90 337.8 327 54.1
Gohir.A09G130700 Gossypium hirsutum HOM05D000861 ORTHO05D004749 1.1e-89 334.7 310 54.8
Gohir.D09G126600 Gossypium hirsutum HOM05D000861 ORTHO05D004749 1.1e-89 334.7 268 60.4
BraA03t12899Z Brassica rapa HOM05D000861 ORTHO05D004749 1.4e-89 334.3 344 49.1
A03p37380 Brassica napus HOM05D000861 ORTHO05D004749 2.1e-88 330.5 344 48.8
BcaC01g04070 Brassica carinata HOM05D000861 ORTHO05D007385 8.6e-87 325.1 340 48.8
BolC3t16804H Brassica oleracea HOM05D000861 ORTHO05D004749 8.6e-87 325.1 340 48.8
C03p45380 Brassica napus HOM05D000861 ORTHO05D004749 7.3e-86 322.0 347 47.3
Sc13g0002540 Simmondsia chinensis HOM05D000861 ORTHO05D004749 6.2e-85 318.9 351 47.6
Ah.09g231540 Amaranthus hybridus HOM05D000861 ORTHO05D004749 8.1e-85 318.5 345 48.7
SHI28323 Sapria himalayana HOM05D000861 ORTHO05D004749 5.8e-83 312.4 319 47.3
Actinidia01592 Actinidia chinensis HOM05D000861 ORTHO05D004749 7.1e-81 305.4 233 65.2
Cpa.g.sc85.15 Carica papaya HOM05D000861 ORTHO05D004749 1.1e-78 298.1 339 47.8
Os02g0605500 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 3.3e-78 296.6 318 45.9
Zm00001eb246660 Zea mays HOM05D000861 ORTHO05D004749 2.1e-77 293.9 315 44.8
Gorai.006G145500 Gossypium raimondii HOM05D000861 ORTHO05D004749 3.5e-72 276.6 268 53.0
Zm00001eb195790 Zea mays HOM05D000861 ORTHO05D004749 2.8e-69 266.9 310 44.2
Mapoly0057s0035 Marchantia polymorpha HOM05D000861 ORTHO05D004749 6.2e-69 265.8 359 39.3
Os12g0181300 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 1.7e-66 257.7 309 42.7
Os04g0218900 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 4.9e-66 256.1 309 43.0
Os05g0305200 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 2.4e-65 253.8 309 42.7
Zm00001eb421970 Zea mays HOM05D000861 ORTHO05D004749 3.2e-65 253.4 290 44.8
Zm00001eb093630 Zea mays HOM05D000861 ORTHO05D004749 3.2e-57 226.9 313 40.9
AagrBONN_evm.TU.Sc2ySwM_228.1074 Anthoceros agrestis HOM05D000861 ORTHO05D004749 7.1e-57 225.7 271 41.7
Pp3c24_6130 Physcomitrium patens HOM05D000861 ORTHO05D004749 3.5e-56 223.4 308 37.3
CBR_g23522 Chara braunii HOM05D000861 ORTHO05D004749 3.0e-55 220.3 263 39.5
Actinidia17295 Actinidia chinensis HOM05D000861 ORTHO05D004749 3.3e-54 216.9 255 48.2
Pp3c13_13880 Physcomitrium patens HOM05D000861 ORTHO05D004749 4.3e-54 216.5 351 34.2
SEGI_19220 Sequoiadendron giganteum HOM05D000861 ORTHO05D004749 2.8e-53 213.8 281 38.1
HPP92_003821 Vanilla planifolia HOM05D000861 ORTHO05D004749 4.8e-53 213.0 191 50.3
HPP92_008306 Vanilla planifolia HOM05D000861 ORTHO05D004749 3.1e-52 210.3 203 47.3
SMO194G0050 Selaginella moellendorffii HOM05D000861 ORTHO05D004749 2.0e-51 207.6 309 34.6
SMO358G0316 Selaginella moellendorffii HOM05D000861 ORTHO05D004749 2.0e-51 207.6 309 34.6
SalBow6G1870 Salvia bowleyana HOM05D000861 ORTHO05D004749 5.9e-43 179.5 150 58.7
Os04g0217900 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 2.1e-40 171.0 144 56.9
TAR626G0577 Trochodendron aralioides HOM05D000861 ORTHO05D003237 2.7e-40 170.6 122 67.2
TAR626G1779 Trochodendron aralioides HOM05D000861 ORTHO05D004749 8.8e-39 165.6 118 67.8
Nitab4.5_0000691g0180 Nicotiana tabacum HOM05D000861 ORTHO05D004749 1.5e-35 154.8 164 47.0
HPP92_003796 Vanilla planifolia HOM05D000861 ORTHO05D004749 1.4e-31 141.7 131 55.0
TAR371G0304 Trochodendron aralioides HOM05D000861 ORTHO05D003237 4.4e-30 136.7 96 68.8
TAR375G0848 Trochodendron aralioides HOM05D000861 ORTHO05D004749 9.1e-28 129.0 139 48.2
SMO361G0253 Selaginella moellendorffii HOM05D000861 ORTHO05D004749 3.8e-26 123.6 228 30.7
RcHm_v2.0_Chr3g0486361 Rosa chinensis HOM05D000861 ORTHO05D004749 9.4e-25 119.0 89 56.2
MCO14G045 Micromonas commoda HOM05D000861 ORTHO05D004749 7.0e-20 102.8 279 27.6
Actinidia38607 Actinidia chinensis HOM05D000861 ORTHO05D004749 1.9e-17 94.7 256 32.4
HPP92_003822 Vanilla planifolia HOM05D000861 ORTHO05D004749 2.6e-14 84.3 60 61.7
RcHm_v2.0_Chr3g0486481 Rosa chinensis HOM05D000861 ORTHO05D004749 5.7e-14 83.2 60 58.3
Actinidia30544 Actinidia chinensis HOM05D000861 ORTHO05D038136 2.4e-12 77.8 61 70.5
RcHm_v2.0_Chr3g0486371 Rosa chinensis HOM05D000861 ORTHO05D004749 6.5e-10 69.7 62 51.6
CBR_g4192 Chara braunii HOM05D000019 ORTHO05D022303 2.3e-07 61.2 96 28.1
Hma1.2p1_0636F.1_g193250 Hydrangea macrophylla HOM05D000861 ORTHO05D038136 5.2e-07 60.1 49 69.4


User provided reference genes

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