Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040455 Camellia sinensis var. sinensis HOM05D002494 ORTHO05D002673 2.2e-60 235.3 111 100.0
CSS0010980 Camellia sinensis var. sinensis HOM05D002494 ORTHO05D002673 9.2e-59 229.9 111 97.3
Rhsim07G0071700 Rhododendron simsii HOM05D002494 ORTHO05D002673 3.2e-27 125.2 76 81.6
Dinv23932 Davidia involucrata HOM05D002494 ORTHO05D002673 1.8e-25 119.4 77 76.6
vmacro13780 Vaccinium macrocarpon HOM05D002494 ORTHO05D002673 3.9e-25 118.2 76 76.3
Sabra01G0024900 Salix brachista HOM05D002285 ORTHO05D004192 1.1e-24 116.7 77 72.7
Cfa010978 Carpinus fangiana HOM05D002494 ORTHO05D002673 3.3e-24 115.2 76 73.7
Lj9C652G3 Lonicera japonica HOM05D002494 ORTHO05D002673 5.6e-24 114.4 77 72.7
Haze_02959 Corylus avellana HOM05D002494 ORTHO05D002673 3.7e-23 111.7 76 72.4
GSVIVG01004016001 Vitis vinifera HOM05D002494 ORTHO05D002673 6.2e-23 110.9 77 68.8
Potri.001G035700 Populus trichocarpa HOM05D002494 ORTHO05D002673 1.8e-22 109.4 77 70.1
GSVIVG01012439001 Vitis vinifera HOM05D002494 ORTHO05D002673 2.4e-22 109.0 77 67.5
GSVIVG01004025001 Vitis vinifera HOM05D002494 ORTHO05D002673 5.3e-22 107.8 77 66.2
Nn7g37051 Nelumbo nucifera HOM05D002494 ORTHO05D002673 6.9e-22 107.5 74 70.3
GSVIVG01012432001 Vitis vinifera HOM05D002494 ORTHO05D002673 9.0e-22 107.1 77 66.2
Lalb_Chr01g0007531 Lupinus albus HOM05D002494 ORTHO05D002673 1.2e-21 106.7 77 67.5
TWI38G0573 Tripterygium wilfordii HOM05D002494 ORTHO05D002673 2.6e-21 105.5 77 64.9
Hma1.2p1_0233F.1_g098290 Hydrangea macrophylla HOM05D002494 ORTHO05D002673 4.5e-21 104.8 77 63.6
Manes.11G009700 Manihot esculenta HOM05D002494 ORTHO05D002673 4.5e-21 104.8 76 67.1
Medtr8g042380 Medicago truncatula HOM05D002494 ORTHO05D002673 4.5e-21 104.8 77 66.2
TPR.G16366 Trifolium pratense HOM05D002494 ORTHO05D002673 5.8e-21 104.4 77 66.2
GSVIVG01004011001 Vitis vinifera HOM05D002494 ORTHO05D002673 7.6e-21 104.0 77 63.6
GSVIVG01012414001 Vitis vinifera HOM05D002494 ORTHO05D002673 7.6e-21 104.0 77 63.6
CiPaw.13G122700 Carya illinoinensis HOM05D002494 ORTHO05D002673 1.3e-20 103.2 77 67.5
THA.LOC104824197 Tarenaya hassleriana HOM05D002494 ORTHO05D002673 2.2e-20 102.4 77 68.8
QL04p022463 Quercus lobata HOM05D002494 ORTHO05D002673 2.9e-20 102.1 76 67.1
arahy.Tifrunner.gnm1.ann1.DAH8ZN Arachis hypogaea HOM05D002494 ORTHO05D002673 3.8e-20 101.7 76 64.5
Gohir.D06G181200 Gossypium hirsutum HOM05D002494 ORTHO05D002673 3.8e-20 101.7 77 68.8
VMungo1127G0396 Vigna mungo HOM05D002494 ORTHO05D002673 3.8e-20 101.7 77 62.3
Ca_24050_v3 Cicer arietinum L. HOM05D002494 ORTHO05D002673 4.9e-20 101.3 77 64.9
GSVIVG01012401001 Vitis vinifera HOM05D002494 ORTHO05D002673 8.4e-20 100.5 77 62.3
Ciclev10002050m.g Citrus clementina HOM05D002494 ORTHO05D002673 1.4e-19 99.8 77 64.9
Duzib114G0378 Durio zibethinus HOM05D002494 ORTHO05D002673 1.9e-19 99.4 70 72.9
Psat4g189000 Pisum sativum HOM05D002494 ORTHO05D002673 1.9e-19 99.4 77 63.6
arahy.Tifrunner.gnm1.ann1.5YBJ8N Arachis hypogaea HOM05D002494 ORTHO05D002673 3.2e-19 98.6 76 63.2
CAN.G201.21 Capsicum annuum HOM05D002494 ORTHO05D002673 3.2e-19 98.6 70 74.3
COL.COLO4_10243 Corchorus olitorius HOM05D002494 ORTHO05D002673 3.2e-19 98.6 70 72.9
PGSC0003DMG401002094 Solanum tuberosum HOM05D002494 ORTHO05D002673 3.2e-19 98.6 70 74.3
Phvul.011G192000 Phaseolus vulgaris HOM05D002494 ORTHO05D002673 4.2e-19 98.2 77 59.7
TAR633G0833 Trochodendron aralioides HOM05D002494 ORTHO05D002673 4.2e-19 98.2 70 70.0
Glyma.13G187800 Glycine max HOM05D002494 ORTHO05D002673 5.5e-19 97.8 77 61.0
Gorai.010G212700 Gossypium raimondii HOM05D002494 ORTHO05D002673 5.5e-19 97.8 77 66.2
MBI13_g02376_MAGBIO Magnolia biondii HOM05D002494 ORTHO05D002673 5.5e-19 97.8 77 62.3
Hund06846 Selenicereus undatus HOM05D002494 ORTHO05D002673 5.5e-19 97.8 73 67.1
Atru.chr12.1192 Acer truncatum HOM05D002494 ORTHO05D002673 7.1e-19 97.4 76 61.8
Prupe.2G049500 Prunus persica HOM05D002494 ORTHO05D002673 7.1e-19 97.4 77 66.2
Sopen06g021320 Solanum pennellii HOM05D002494 ORTHO05D002673 9.3e-19 97.1 70 72.9
Cc01_g13120 Coffea canephora HOM05D002494 ORTHO05D002673 1.6e-18 96.3 78 61.5
FAN03G2619 Fragaria x ananassa HOM05D002494 ORTHO05D002673 1.6e-18 96.3 74 66.2
FAN06G4716 Fragaria x ananassa HOM05D002494 ORTHO05D002673 1.6e-18 96.3 74 66.2
LjContig00430g0021063 Lotus japonicus HOM05D002494 ORTHO05D002673 4.6e-18 94.7 77 62.3
MD02G1270900 Malus domestica HOM05D002494 ORTHO05D002673 4.6e-18 94.7 77 64.9
FvH4_7g04370 Fragaria vesca HOM05D002494 ORTHO05D002673 6.0e-18 94.4 74 64.9
Solyc06g061120.4 Solanum lycopersicum HOM05D002494 ORTHO05D002673 7.9e-18 94.0 70 70.0
AT3G54380 Arabidopsis thaliana HOM05D002494 ORTHO05D002673 1.0e-17 93.6 70 68.6
AL5G35430 Arabidopsis lyrata HOM05D002494 ORTHO05D002673 1.3e-17 93.2 77 62.3
CARHR164290 Cardamine hirsuta HOM05D002494 ORTHO05D002673 1.3e-17 93.2 70 67.1
Peaxi162Scf00615g00312 Petunia axillaris HOM05D002494 ORTHO05D002673 1.8e-17 92.8 70 70.0
MSTRG.5083 Avicennia marina HOM05D002494 ORTHO05D002673 3.9e-17 91.7 75 57.3
Carub.0005s2097 Capsella rubella HOM05D002494 ORTHO05D002673 3.9e-17 91.7 70 67.1
Gohir.A06G172400 Gossypium hirsutum HOM05D002494 ORTHO05D002673 6.7e-17 90.9 89 58.4
EL10Ac4g08839 Beta vulgaris HOM05D002494 ORTHO05D002673 8.7e-17 90.5 71 64.8
HPP92_014254 Vanilla planifolia HOM05D002494 ORTHO05D002673 8.7e-17 90.5 71 62.0
AUR62035526 Chenopodium quinoa HOM05D002494 ORTHO05D002673 1.1e-16 90.1 71 62.0
AUR62041649 Chenopodium quinoa HOM05D002494 ORTHO05D002673 1.1e-16 90.1 71 62.0
Thhalv10010422m.g Eutrema salsugineum HOM05D002494 ORTHO05D002673 1.1e-16 90.1 70 67.1
RcHm_v2.0_Chr1g0329461 Rosa chinensis HOM05D002494 ORTHO05D002673 1.1e-16 90.1 74 63.5
Thecc.10G133600 Theobroma cacao HOM05D002494 ORTHO05D002673 1.1e-16 90.1 70 67.1
Aa31LG7G14280 Aethionema arabicum HOM05D002494 ORTHO05D002673 2.5e-16 89.0 77 59.7
BcaC08g44680 Brassica carinata HOM05D002494 ORTHO05D002673 2.5e-16 89.0 77 59.7
C06p22130 Brassica napus HOM05D002494 ORTHO05D002673 2.5e-16 89.0 77 59.7
BolC6t37400H Brassica oleracea HOM05D002494 ORTHO05D002673 2.5e-16 89.0 77 59.7
BcaB02g07738 Brassica carinata HOM05D002494 ORTHO05D002673 3.3e-16 88.6 77 59.7
Lsat_1_v5_gn_1_27380 Lactuca sativa HOM05D002494 ORTHO05D002673 4.3e-16 88.2 77 54.5
Sp5g08030 Schrenkiella parvula HOM05D002494 ORTHO05D002673 4.3e-16 88.2 77 61.0
Sc06g0002980 Simmondsia chinensis HOM05D002494 ORTHO05D002673 7.4e-16 87.4 76 56.6
A07p22090 Brassica napus HOM05D002494 ORTHO05D002673 1.3e-15 86.7 77 59.7
BraA07t29892Z Brassica rapa HOM05D002494 ORTHO05D002673 1.3e-15 86.7 77 59.7
Eucgr.G03187 Eucalyptus grandis HOM05D002494 ORTHO05D002673 1.3e-15 86.7 79 58.2
CDE04G1894 Ceratophyllum demersum HOM05D002494 ORTHO05D002673 2.2e-15 85.9 71 63.4
Sed0010214 Sechium edule HOM05D002494 ORTHO05D002673 2.2e-15 85.9 75 58.7
ClCG11G012900 Citrullus lanatus HOM05D002494 ORTHO05D002673 3.7e-15 85.1 75 57.3
MELO3C011781.2 Cucumis melo HOM05D002494 ORTHO05D002673 4.8e-15 84.7 75 54.7
CsaV3_5G029320 Cucumis sativus L. HOM05D002494 ORTHO05D002673 1.1e-14 83.6 75 54.7
PSO384G1419 Papaver somniferum HOM05D002494 ORTHO05D002673 1.4e-14 83.2 74 55.4
ECA247G0765 Erigeron canadensis HOM05D002494 ORTHO05D002673 2.4e-14 82.4 82 54.9
PSO339G2887 Papaver somniferum HOM05D002494 ORTHO05D002673 2.4e-14 82.4 74 54.1
SGA_v2.0_scaffold232G43474 Striga asiatica HOM05D002494 ORTHO05D002673 6.9e-14 80.9 75 52.0
Ah.15g098080 Amaranthus hybridus HOM05D002494 ORTHO05D002673 9.0e-14 80.5 65 60.0
ATR0782G079 Amborella trichopoda HOM05D002494 ORTHO05D002673 2.0e-13 79.3 71 56.3
Nitab4.5_0000256g0430 Nicotiana tabacum HOM05D002494 ORTHO05D002673 4.5e-13 78.2 59 71.2
HanXRQChr04g0101361 Helianthus annuus HOM05D002494 ORTHO05D002673 1.3e-12 76.6 79 50.6
Migut.N01869 Erythranthe guttata HOM05D002494 ORTHO05D002673 5.0e-12 74.7 77 50.6
unitig_26.g9493 Utricularia gibba HOM05D002494 ORTHO05D002673 2.5e-11 72.4 107 41.1
Zm00001eb394650 Zea mays HOM05D002494 ORTHO05D002673 4.6e-10 68.2 74 50.0
AUR62041643 Chenopodium quinoa HOM05D002494 ORTHO05D002673 6.7e-09 64.3 65 50.8
FAN01G2798 Fragaria x ananassa HOM05D002494 ORTHO05D002673 1.7e-07 59.7 50 62.0
SEGI_35930 Sequoiadendron giganteum HOM05D002494 ORTHO05D002673 2.8e-07 58.9 95 36.8
SMO364G0447 Selaginella moellendorffii HOM05D002494 ORTHO05D002673 3.7e-07 58.5 74 44.6
Mapoly0144s0009 Marchantia polymorpha HOM05D002494 ORTHO05D002673 1.1e-06 57.0 75 42.7


User provided reference genes

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