Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040454 Camellia sinensis var. sinensis HOM05D006975 ORTHO05D008736 8.9e-165 583.6 300 100.0
CSS0026180 Camellia sinensis var. sinensis HOM05D006975 ORTHO05D008736 2.3e-160 568.9 300 98.0
Dinv39526 Davidia involucrata HOM05D006975 ORTHO05D008736 1.2e-97 360.5 300 66.3
TAR536G0001 Trochodendron aralioides HOM05D006975 ORTHO05D008736 6.5e-83 311.6 301 60.1
CiPaw.08G066800 Carya illinoinensis HOM05D006975 ORTHO05D008736 4.7e-81 305.4 303 58.7
Solyc04g081540.3 Solanum lycopersicum HOM05D006975 ORTHO05D008736 8.0e-81 304.7 302 58.3
Sopen04g035150 Solanum pennellii HOM05D006975 ORTHO05D008736 1.8e-80 303.5 302 57.9
Actinidia15428 Actinidia chinensis HOM05D006975 ORTHO05D008736 2.0e-79 300.1 211 77.3
PGSC0003DMG401009870 Solanum tuberosum HOM05D006975 ORTHO05D008736 2.2e-78 296.6 302 57.3
Nn1g05932 Nelumbo nucifera HOM05D006975 ORTHO05D008736 3.7e-78 295.8 285 61.8
Rhsim06G0020700 Rhododendron simsii HOM05D006975 ORTHO05D008736 8.2e-78 294.7 389 50.4
GSVIVG01009926001 Vitis vinifera HOM05D006975 ORTHO05D008736 9.1e-77 291.2 303 57.8
Haze_04763 Corylus avellana HOM05D006975 ORTHO05D008736 1.5e-74 283.9 296 56.8
Potri.005G240800 Populus trichocarpa HOM05D006975 ORTHO05D008736 1.5e-74 283.9 299 55.2
MBI05_g19267_MAGBIO Magnolia biondii HOM05D006975 ORTHO05D008736 2.1e-73 280.0 282 59.6
Nitab4.5_0008000g0010 Nicotiana tabacum HOM05D006975 ORTHO05D008736 2.1e-73 280.0 304 58.6
Lj4A797T59 Lonicera japonica HOM05D006975 ORTHO05D008736 2.7e-73 279.6 305 54.4
Cc10_g01570 Coffea canephora HOM05D006975 ORTHO05D008736 4.0e-72 275.8 318 53.5
Manes.05G146300 Manihot esculenta HOM05D006975 ORTHO05D008736 5.2e-72 275.4 303 54.5
MD08G1012000 Malus domestica HOM05D006975 ORTHO05D008736 8.8e-72 274.6 297 55.9
Hma1.2p1_0023F.1_g015550 Hydrangea macrophylla HOM05D006975 ORTHO05D008736 1.5e-71 273.9 242 66.9
TWI12G0084 Tripterygium wilfordii HOM05D006975 ORTHO05D008736 1.3e-70 270.8 303 55.4
Sabra05G0186300 Salix brachista HOM05D006975 ORTHO05D008736 4.8e-70 268.9 300 53.0
MSTRG.1185 Avicennia marina HOM05D006975 ORTHO05D008736 1.8e-69 266.9 304 55.3
Oeu027521.1 Olea europaea HOM05D006975 ORTHO05D008736 9.1e-69 264.6 303 53.8
Cfa006087 Carpinus fangiana HOM05D006975 ORTHO05D008736 7.7e-68 261.5 284 54.2
QL02p011816 Quercus lobata HOM05D006975 ORTHO05D008736 1.3e-67 260.8 341 49.0
CAN.G311.39 Capsicum annuum HOM05D006975 ORTHO05D008736 6.5e-67 258.5 353 48.7
HanXRQChr05g0145201 Helianthus annuus HOM05D006975 ORTHO05D008736 8.5e-67 258.1 281 56.6
ECA232G2413 Erigeron canadensis HOM05D006975 ORTHO05D008736 4.2e-66 255.8 269 56.5
COL.COLO4_26134 Corchorus olitorius HOM05D006975 ORTHO05D008736 7.2e-66 255.0 313 53.0
ClCG05G018220 Citrullus lanatus HOM05D006975 ORTHO05D008736 1.6e-65 253.8 300 53.3
Cpa.g.sc26.57 Carica papaya HOM05D006975 ORTHO05D008736 4.7e-65 252.3 305 50.5
Duzib093G1023 Durio zibethinus HOM05D006975 ORTHO05D008736 1.0e-64 251.1 308 51.9
CANSAT25G0709 Cannabis sativa HOM05D006975 ORTHO05D008736 3.0e-64 249.6 281 53.7
CDE04G0963 Ceratophyllum demersum HOM05D006975 ORTHO05D008736 4.0e-64 249.2 276 52.9
DCAR_021031 Daucus carota HOM05D006975 ORTHO05D008736 4.0e-64 249.2 293 54.3
Gohir.D01G097400 Gossypium hirsutum HOM05D006975 ORTHO05D008736 8.8e-64 248.1 250 57.6
Sed0023128 Sechium edule HOM05D006975 ORTHO05D008736 8.8e-64 248.1 267 57.3
Gohir.A01G110800 Gossypium hirsutum HOM05D006975 ORTHO05D008736 1.2e-63 247.7 250 57.2
Gorai.002G123100 Gossypium raimondii HOM05D006975 ORTHO05D008736 2.0e-63 246.9 250 57.2
PGR031G2234 Punica granatum HOM05D006975 ORTHO05D008736 2.6e-63 246.5 307 51.1
PSO675G8288 Papaver somniferum HOM05D006975 ORTHO05D008736 3.4e-63 246.1 248 56.5
Aqoxy6G02228 Aquilegia oxysepala HOM05D006975 ORTHO05D008736 7.5e-63 245.0 241 58.9
RcHm_v2.0_Chr6g0303031 Rosa chinensis HOM05D006975 ORTHO05D008736 7.5e-63 245.0 285 52.6
Atru.chr13.277_Atru.chr13.278 Acer truncatum HOM05D006975 ORTHO05D008736 1.7e-62 243.8 298 51.3
Migut.C00848 Erythranthe guttata HOM05D006975 ORTHO05D008736 2.8e-62 243.0 311 53.1
Lj5g0003318 Lotus japonicus HOM05D006975 ORTHO05D008736 2.8e-62 243.0 215 60.0
Prupe.1G364300 Prunus persica HOM05D006975 ORTHO05D008736 3.7e-62 242.7 303 52.1
PSO541G1271 Papaver somniferum HOM05D006975 ORTHO05D008736 1.1e-61 241.1 250 55.2
CsaV3_3G045930 Cucumis sativus L. HOM05D006975 ORTHO05D008736 7.0e-61 238.4 307 49.8
FvH4_2g38330 Fragaria vesca HOM05D006975 ORTHO05D008736 2.0e-60 236.9 286 51.7
Phvul.007G020200 Phaseolus vulgaris HOM05D006975 ORTHO05D008736 1.7e-59 233.8 260 55.0
arahy.Tifrunner.gnm1.ann1.Z9XT7U Arachis hypogaea HOM05D006975 ORTHO05D008736 3.8e-59 232.6 245 55.1
EL10Ac1g02185 Beta vulgaris HOM05D006975 ORTHO05D008736 6.6e-59 231.9 293 48.8
Ciclev10001912m.g Citrus clementina HOM05D006975 ORTHO05D008736 2.5e-58 229.9 310 48.1
Peaxi162Scf00553g00101 Petunia axillaris HOM05D006975 ORTHO05D008736 3.3e-58 229.6 194 65.5
THA.LOC104798667 Tarenaya hassleriana HOM05D006975 ORTHO05D008736 3.3e-58 229.6 220 59.5
vmacro07578 Vaccinium macrocarpon HOM05D006975 ORTHO05D008736 3.3e-58 229.6 373 47.2
TPR.G2436 Trifolium pratense HOM05D006975 ORTHO05D008736 4.3e-58 229.2 216 59.3
Lalb_Chr02g0143331 Lupinus albus HOM05D006975 ORTHO05D008736 7.3e-58 228.4 282 49.6
Os04g0250700 Oryza sativa ssp. japonica HOM05D006975 ORTHO05D008736 7.3e-58 228.4 266 52.6
Medtr1g112320 Medicago truncatula HOM05D006975 ORTHO05D008736 9.5e-58 228.0 220 56.8
Thecc.08G046000 Theobroma cacao HOM05D006975 ORTHO05D008736 2.1e-57 226.9 260 54.2
Hund05184 Selenicereus undatus HOM05D006975 ORTHO05D008736 6.1e-57 225.3 289 49.1
AL7G29110 Arabidopsis lyrata HOM05D006975 ORTHO05D008736 1.0e-56 224.6 304 47.7
MELO3C003746.2 Cucumis melo HOM05D006975 ORTHO05D008736 1.4e-56 224.2 319 48.0
BcaC09g50900 Brassica carinata HOM05D006975 ORTHO05D008736 2.3e-56 223.4 309 46.3
HPP92_004984 Vanilla planifolia HOM05D006975 ORTHO05D008736 2.3e-56 223.4 279 50.9
Ca_11200_v3 Cicer arietinum L. HOM05D006975 ORTHO05D008736 3.0e-56 223.0 307 46.6
SGA_v2.0_scaffold11G05927 Striga asiatica HOM05D006975 ORTHO05D008736 5.2e-56 222.2 233 55.4
FAN20G0256 Fragaria x ananassa HOM05D006975 ORTHO05D008736 8.9e-56 221.5 292 50.0
BraA01t01489Z Brassica rapa HOM05D006975 ORTHO05D008736 1.2e-55 221.1 222 55.4
BolC1t01871H Brassica oleracea HOM05D006975 ORTHO05D008736 1.5e-55 220.7 310 48.4
VMungo0720G0770 Vigna mungo HOM05D006975 ORTHO05D008736 1.5e-55 220.7 301 48.8
C01p19420 Brassica napus HOM05D006975 ORTHO05D008736 2.0e-55 220.3 310 48.4
Lsat_1_v5_gn_0_34641 Lactuca sativa HOM05D006975 ORTHO05D008736 2.0e-55 220.3 231 57.1
Psat6g231560 Pisum sativum HOM05D006975 ORTHO05D008736 4.4e-55 219.2 229 54.1
FAN15G2275 Fragaria x ananassa HOM05D006975 ORTHO05D008736 1.3e-54 217.6 293 47.8
BcaNung01123 Brassica carinata HOM05D006975 ORTHO05D008736 6.4e-54 215.3 210 57.1
Atru.chr13.275 Acer truncatum HOM05D006975 ORTHO05D008736 1.4e-53 214.2 240 54.6
Thhalv10025797m.g Eutrema salsugineum HOM05D006975 ORTHO05D008736 1.8e-53 213.8 206 57.8
Zm00001eb086730 Zea mays HOM05D006975 ORTHO05D008736 9.2e-53 211.5 263 51.3
CARHR231580 Cardamine hirsuta HOM05D006975 ORTHO05D008736 7.8e-52 208.4 303 44.6
Eucgr.H00993 Eucalyptus grandis HOM05D006975 ORTHO05D008736 2.3e-51 206.8 192 59.9
A01p15500 Brassica napus HOM05D006975 ORTHO05D008736 3.0e-51 206.5 249 49.4
Sed0014296 Sechium edule HOM05D006975 ORTHO05D008736 3.0e-51 206.5 305 46.2
Glyma.20G108900 Glycine max HOM05D006975 ORTHO05D008736 5.0e-51 205.7 218 54.6
Aa31sc424G20 Aethionema arabicum HOM05D006975 ORTHO05D008736 6.6e-51 205.3 270 46.7
Sp7g22140 Schrenkiella parvula HOM05D006975 ORTHO05D008736 6.6e-51 205.3 304 45.4
AUR62035015 Chenopodium quinoa HOM05D006975 ORTHO05D008736 8.6e-51 204.9 291 45.7
MD08G1011800 Malus domestica HOM05D006975 ORTHO05D008736 4.3e-50 202.6 198 57.1
FAN27G0483 Fragaria x ananassa HOM05D006975 ORTHO05D008736 9.5e-50 201.4 207 57.0
AT4G24175 Arabidopsis thaliana HOM05D006975 ORTHO05D008736 3.6e-49 199.5 310 42.6
Carub.0007s1692 Capsella rubella HOM05D006975 ORTHO05D008736 3.6e-49 199.5 305 44.6
Hma1.2p1_0023F.1_g015540 Hydrangea macrophylla HOM05D006975 ORTHO05D008736 3.1e-48 196.4 293 47.8
unitig_748.g7725 Utricularia gibba HOM05D006975 ORTHO05D008736 5.8e-47 192.2 289 43.6
arahy.Tifrunner.gnm1.ann1.Y91ZV9 Arachis hypogaea HOM05D006975 ORTHO05D008736 6.2e-41 172.2 311 39.5
AUR62041899 Chenopodium quinoa HOM05D006975 ORTHO05D008736 6.8e-40 168.7 176 55.7
ATR0564G524 Amborella trichopoda HOM05D006975 ORTHO05D008736 1.5e-31 141.0 239 41.8
Pp3c5_3830 Physcomitrium patens HOM05D006975 ORTHO05D008736 7.1e-29 132.1 213 42.3
THA.LOC104798678 Tarenaya hassleriana HOM05D006975 ORTHO05D008736 1.7e-27 127.5 218 43.1
TAR381G1583 Trochodendron aralioides HOM05D006975 ORTHO05D008736 3.0e-27 126.7 151 51.0
Mapoly0138s0045 Marchantia polymorpha HOM05D006975 ORTHO05D008736 1.6e-25 120.9 224 34.8
TAR628G0560 Trochodendron aralioides HOM05D006975 ORTHO05D008736 2.4e-21 107.1 138 50.7
CDE02G4250 Ceratophyllum demersum HOM05D000565 ORTHO05D004389 4.2e-21 106.3 170 42.4
Eucgr.H00979 Eucalyptus grandis HOM05D006975 ORTHO05D008736 5.6e-18 95.9 122 44.3
SEGI_37599 Sequoiadendron giganteum HOM05D006975 ORTHO05D008736 4.8e-17 92.8 62 74.2
Eucgr.F00573 Eucalyptus grandis HOM05D006975 ORTHO05D008736 9.0e-16 88.6 154 39.6
Eucgr.F00575 Eucalyptus grandis HOM05D006975 ORTHO05D008736 5.8e-15 85.9 76 60.5
CBR_g44391 Chara braunii HOM05D006975 ORTHO05D008736 1.7e-14 84.3 98 48.0
arahy.Tifrunner.gnm1.ann1.1D0YR0 Arachis hypogaea HOM05D006975 ORTHO05D008736 6.4e-14 82.4 94 50.0
Pp3c24_16390 Physcomitrium patens HOM05D003148 ORTHO05D003894 7.1e-13 79.0 114 36.0
Pp3c8_21620 Physcomitrium patens HOM05D003148 ORTHO05D003894 7.1e-13 79.0 110 40.9
SEGI_16371 Sequoiadendron giganteum HOM05D006975 ORTHO05D008736 5.1e-11 72.8 97 42.3
Cfa006091 Carpinus fangiana HOM05D006789 ORTHO05D008460 4.3e-10 69.7 150 38.7
Eucgr.H00986 Eucalyptus grandis HOM05D006975 ORTHO05D008736 1.1e-08 65.1 42 71.4
Eucgr.H00983 Eucalyptus grandis HOM05D006975 ORTHO05D008736 2.2e-06 57.4 57 52.6


User provided reference genes

Program Settings