Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040358 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 8.3e-38 159.8 79 100.0
CSS0036997 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 3.9e-35 151.0 79 94.9
CSS0005222 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 5.4e-21 104.0 61 90.2
CSS0012001 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 5.4e-21 104.0 61 90.2
Lj2C1111T4 Lonicera japonica HOM05D004953 ORTHO05D006193 1.3e-19 99.4 60 88.3
Actinidia04690 Actinidia chinensis HOM05D004953 ORTHO05D006193 2.3e-19 98.6 61 83.6
Actinidia33396 Actinidia chinensis HOM05D004953 ORTHO05D006193 2.3e-19 98.6 61 83.6
Actinidia23342 Actinidia chinensis HOM05D004953 ORTHO05D006193 1.5e-18 95.9 61 80.3
Dinv28790 Davidia involucrata HOM05D004953 ORTHO05D006193 3.3e-18 94.7 61 83.6
Rhsim13G0055000 Rhododendron simsii HOM05D004953 ORTHO05D006193 7.3e-18 93.6 62 75.8
vmacro02841 Vaccinium macrocarpon HOM05D004953 ORTHO05D006193 1.3e-17 92.8 61 78.7
Cc01_g15850 Coffea canephora HOM05D004953 ORTHO05D006193 1.1e-16 89.7 60 76.7
DCAR_004775 Daucus carota HOM05D004953 ORTHO05D006193 5.3e-16 87.4 67 70.1
Lsat_1_v5_gn_8_98501 Lactuca sativa HOM05D004953 ORTHO05D006193 5.3e-16 87.4 62 75.8
HanXRQChr12g0363951 Helianthus annuus HOM05D004953 ORTHO05D006193 1.2e-15 86.3 61 77.0
Migut.D00772 Erythranthe guttata HOM05D004953 ORTHO05D006193 2.0e-15 85.5 67 70.1
TAR365G0304 Trochodendron aralioides HOM05D004953 ORTHO05D006193 2.0e-15 85.5 60 71.7
CAN.G1468.3 Capsicum annuum HOM05D004953 ORTHO05D006193 2.6e-15 85.1 58 74.1
AUR62008065 Chenopodium quinoa HOM05D004953 ORTHO05D006193 3.4e-15 84.7 60 73.3
SalBow3G1227 Salvia bowleyana HOM05D004953 ORTHO05D006193 3.4e-15 84.7 67 67.2
Sc17g0001570 Simmondsia chinensis HOM05D004953 ORTHO05D006193 3.4e-15 84.7 62 69.4
ECA236G0268 Erigeron canadensis HOM05D004953 ORTHO05D006193 4.5e-15 84.3 61 73.8
Aqoxy2G04177 Aquilegia oxysepala HOM05D004953 ORTHO05D006193 7.6e-15 83.6 63 71.4
PGSC0003DMG400021911 Solanum tuberosum HOM05D004953 ORTHO05D006193 7.6e-15 83.6 58 74.1
EL10Ac5g10584 Beta vulgaris HOM05D004953 ORTHO05D006193 9.9e-15 83.2 60 68.3
AUR62028642 Chenopodium quinoa HOM05D004953 ORTHO05D006193 9.9e-15 83.2 60 71.7
FAN27G2958 Fragaria x ananassa HOM05D004953 ORTHO05D006193 9.9e-15 83.2 61 67.2
Nn1g09452 Nelumbo nucifera HOM05D004953 ORTHO05D006193 9.9e-15 83.2 67 67.2
Peaxi162Scf02239g00020 Petunia axillaris HOM05D004953 ORTHO05D006193 1.7e-14 82.4 58 70.7
RcHm_v2.0_Chr6g0282191 Rosa chinensis HOM05D004953 ORTHO05D006193 1.7e-14 82.4 61 67.2
Sopen09g015810 Solanum pennellii HOM05D004953 ORTHO05D006193 1.7e-14 82.4 58 72.4
Nitab4.5_0000038g0380 Nicotiana tabacum HOM05D004953 ORTHO05D006193 2.2e-14 82.0 58 72.4
Nitab4.5_0008926g0010 Nicotiana tabacum HOM05D004953 ORTHO05D006193 2.2e-14 82.0 58 72.4
MD05G1153500 Malus domestica HOM05D004953 ORTHO05D006193 2.9e-14 81.6 67 62.7
Hund02809 Selenicereus undatus HOM05D004953 ORTHO05D006193 2.9e-14 81.6 57 71.9
Solyc09g042760.2 Solanum lycopersicum HOM05D004953 ORTHO05D006193 4.9e-14 80.9 58 70.7
Sed0024263 Sechium edule HOM05D004953 ORTHO05D006193 1.9e-13 79.0 61 63.9
Cpa.g.sc8.38 Carica papaya HOM05D004953 ORTHO05D006193 2.4e-13 78.6 61 63.9
MELO3C008751.2 Cucumis melo HOM05D004953 ORTHO05D006193 3.2e-13 78.2 61 62.3
Prupe.8G186900 Prunus persica HOM05D004953 ORTHO05D006193 3.2e-13 78.2 67 62.7
Oeu013420.1 Olea europaea HOM05D004953 ORTHO05D006193 4.2e-13 77.8 67 64.2
Ah.11g050790 Amaranthus hybridus HOM05D004953 ORTHO05D006193 7.1e-13 77.0 60 65.0
CsaV3_2G009520 Cucumis sativus L. HOM05D004953 ORTHO05D006193 1.2e-12 76.3 61 60.7
CARHR183800 Cardamine hirsuta HOM05D004953 ORTHO05D006193 2.7e-12 75.1 61 60.7
GSVIVG01001528001 Vitis vinifera HOM05D004953 ORTHO05D006193 3.5e-12 74.7 60 65.0
ClCG11G010960 Citrullus lanatus HOM05D004953 ORTHO05D006193 6.0e-12 73.9 57 63.2
Duzib133G0915 Durio zibethinus HOM05D004953 ORTHO05D006193 6.0e-12 73.9 60 63.3
Manes.13G056300 Manihot esculenta HOM05D004953 ORTHO05D006193 6.0e-12 73.9 61 59.0
Lalb_Chr03g0040531 Lupinus albus HOM05D004953 ORTHO05D006193 7.9e-12 73.6 59 62.7
COL.COLO4_34276 Corchorus olitorius HOM05D004953 ORTHO05D006193 1.0e-11 73.2 67 53.7
CANSAT01G2219 Cannabis sativa HOM05D004953 ORTHO05D006193 1.3e-11 72.8 58 63.8
THA.LOC104819011 Tarenaya hassleriana HOM05D004953 ORTHO05D006193 1.8e-11 72.4 60 60.0
Potri.014G175350 Populus trichocarpa HOM05D004953 ORTHO05D006193 2.3e-11 72.0 62 56.5
SHI10219 Sapria himalayana HOM05D004953 ORTHO05D006193 2.3e-11 72.0 62 58.1
SGA_v2.0_scaffold8G04488 Striga asiatica HOM05D004953 ORTHO05D006193 2.3e-11 72.0 74 58.1
BcaC06g30800 Brassica carinata HOM05D004953 ORTHO05D006193 3.9e-11 71.2 61 57.4
arahy.Tifrunner.gnm1.ann1.57Z9Z9 Arachis hypogaea HOM05D004953 ORTHO05D006193 5.1e-11 70.9 67 55.2
Gohir.A11G144000 Gossypium hirsutum HOM05D004953 ORTHO05D006193 5.1e-11 70.9 60 56.7
Gohir.D11G150400 Gossypium hirsutum HOM05D004953 ORTHO05D006193 5.1e-11 70.9 60 56.7
Gorai.007G161300 Gossypium raimondii HOM05D004953 ORTHO05D006193 5.1e-11 70.9 60 56.7
Thecc.01G207300 Theobroma cacao HOM05D004953 ORTHO05D006193 5.1e-11 70.9 60 58.3
TWI36G1252 Tripterygium wilfordii HOM05D004953 ORTHO05D006193 5.1e-11 70.9 72 54.2
Sed0015090 Sechium edule HOM05D004953 ORTHO05D006193 6.7e-11 70.5 61 57.4
AL8G21200 Arabidopsis lyrata HOM05D004953 ORTHO05D006193 8.7e-11 70.1 61 57.4
Carub.0008s0798 Capsella rubella HOM05D004953 ORTHO05D006193 8.7e-11 70.1 61 57.4
Thhalv10005371m.g Eutrema salsugineum HOM05D004953 ORTHO05D006193 8.7e-11 70.1 59 57.6
AT5G48390 Arabidopsis thaliana HOM05D004953 ORTHO05D006193 1.1e-10 69.7 61 57.4
Sp2g18750 Schrenkiella parvula HOM05D004953 ORTHO05D006193 1.1e-10 69.7 59 57.6
FvH4_2g17460 Fragaria vesca HOM05D004953 ORTHO05D006193 1.9e-10 68.9 53 64.2
FAN24G2388 Fragaria x ananassa HOM05D004953 ORTHO05D006193 1.9e-10 68.9 53 64.2
Ciclev10018269m.g Citrus clementina HOM05D004953 ORTHO05D006193 2.5e-10 68.6 68 55.9
FAN14G2335 Fragaria x ananassa HOM05D004953 ORTHO05D006193 2.5e-10 68.6 70 52.9
Eucgr.K00106 Eucalyptus grandis HOM05D004953 ORTHO05D006193 4.3e-10 67.8 67 50.7
Phvul.008G050500 Phaseolus vulgaris HOM05D004953 ORTHO05D006193 7.4e-10 67.0 67 50.7
FAN15G1962 Fragaria x ananassa HOM05D004953 ORTHO05D006193 9.6e-10 66.6 53 62.3
Lj1g0025378 Lotus japonicus HOM05D004953 ORTHO05D006193 9.6e-10 66.6 67 50.7
A06p39200 Brassica napus HOM05D004953 ORTHO05D006193 1.3e-09 66.2 59 55.9
Glyma.18G246600 Glycine max HOM05D004953 ORTHO05D006193 1.3e-09 66.2 67 50.7
Aa31LG11G8930 Aethionema arabicum HOM05D004953 ORTHO05D006193 2.1e-09 65.5 73 49.3
C07p39140 Brassica napus HOM05D004953 ORTHO05D006193 2.1e-09 65.5 59 55.9
BolC7t44434H Brassica oleracea HOM05D004953 ORTHO05D006193 2.1e-09 65.5 59 55.9
Psat3g100880 Pisum sativum HOM05D004953 ORTHO05D006193 2.8e-09 65.1 67 52.2
TPR.G35843 Trifolium pratense HOM05D004953 ORTHO05D006193 2.8e-09 65.1 67 50.7
VMungo1383G3652 Vigna mungo HOM05D004953 ORTHO05D006193 2.8e-09 65.1 67 49.3
CDE07G1537 Ceratophyllum demersum HOM05D004953 ORTHO05D006193 3.7e-09 64.7 57 57.9
Ca_08034_v3 Cicer arietinum L. HOM05D004953 ORTHO05D006193 3.7e-09 64.7 67 50.7
Medtr7g080880 Medicago truncatula HOM05D004953 ORTHO05D006193 3.7e-09 64.7 67 50.7
Aa31LG11G3580 Aethionema arabicum HOM05D004953 ORTHO05D006193 1.1e-08 63.2 62 51.6
Sabra14G0134100 Salix brachista HOM05D004953 ORTHO05D006193 1.4e-08 62.8 58 53.4
Cfa010574 Carpinus fangiana HOM05D004953 ORTHO05D006193 2.4e-08 62.0 66 56.1
Haze_03508 Corylus avellana HOM05D004953 ORTHO05D006193 2.4e-08 62.0 66 56.1
unitig_52.g16794 Utricularia gibba HOM05D004953 ORTHO05D006193 2.4e-08 62.0 57 57.9
MBI10_g23576_MAGBIO Magnolia biondii HOM05D004953 ORTHO05D006193 6.9e-08 60.5 59 57.6
CiPaw.13G055800 Carya illinoinensis HOM05D004953 ORTHO05D006193 2.0e-07 58.9 62 54.8
ATR0743G003 Amborella trichopoda HOM05D004953 ORTHO05D006193 3.4e-07 58.2 67 44.8
Atru.BG.40.p Acer truncatum HOM05D004953 ORTHO05D006193 4.5e-07 57.8 68 54.4
PSO017G6601 Papaver somniferum HOM05D004953 ORTHO05D006193 5.8e-07 57.4 44 61.4
PSO478G1281 Papaver somniferum HOM05D004953 ORTHO05D006193 5.8e-07 57.4 44 61.4
FvH4_4g15200 Fragaria vesca HOM05D004953 ORTHO05D006193 6.4e-06 53.9 40 65.0


User provided reference genes

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