Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040274 Camellia sinensis var. sinensis HOM05D006028 ORTHO05D007784 7.4e-209 730.3 377 100.0
CSS0038458 Camellia sinensis var. sinensis HOM05D006028 ORTHO05D007784 1.7e-205 719.2 377 98.1
Rhsim10G0067700 Rhododendron simsii HOM05D006028 ORTHO05D007784 9.4e-164 580.5 377 79.3
Actinidia15886 Actinidia chinensis HOM05D006028 ORTHO05D007784 1.0e-162 577.0 377 79.3
Hma1.2p1_1109F.1_g258060 Hydrangea macrophylla HOM05D006028 ORTHO05D007784 1.0e-154 550.4 378 75.1
Cfa007919 Carpinus fangiana HOM05D006028 ORTHO05D007784 1.2e-142 510.4 377 71.1
TWI53G1478 Tripterygium wilfordii HOM05D006028 ORTHO05D007784 4.6e-142 508.4 378 70.6
Manes.02G069100 Manihot esculenta HOM05D006028 ORTHO05D007784 7.8e-142 507.7 377 70.6
TAR629G2682 Trochodendron aralioides HOM05D006028 ORTHO05D007784 5.0e-141 505.0 377 70.0
Dinv34819 Davidia involucrata HOM05D006028 ORTHO05D007784 1.9e-140 503.1 377 72.9
GSVIVG01031016001 Vitis vinifera HOM05D006028 ORTHO05D007784 1.6e-139 500.0 377 69.8
vmacro05550 Vaccinium macrocarpon HOM05D006028 ORTHO05D007784 1.8e-138 496.5 378 71.7
Ciclev10011993m.g Citrus clementina HOM05D006028 ORTHO05D007784 2.3e-138 496.1 377 69.0
Haze_14158 Corylus avellana HOM05D006028 ORTHO05D007784 2.3e-138 496.1 385 68.8
PGSC0003DMG400026405 Solanum tuberosum HOM05D006028 ORTHO05D007784 4.0e-138 495.4 377 67.1
Lj2A441T56 Lonicera japonica HOM05D006028 ORTHO05D007784 5.2e-138 495.0 378 70.9
Sopen02g030790 Solanum pennellii HOM05D006028 ORTHO05D007784 8.9e-138 494.2 377 67.1
Oeu008432.1 Olea europaea HOM05D006028 ORTHO05D007784 3.4e-137 492.3 377 66.6
Thecc.04G133100 Theobroma cacao HOM05D006028 ORTHO05D007784 5.8e-137 491.5 379 69.4
CAN.G625.27 Capsicum annuum HOM05D006028 ORTHO05D007784 2.4e-135 486.1 377 66.6
Nitab4.5_0000912g0170 Nicotiana tabacum HOM05D006028 ORTHO05D007784 3.2e-135 485.7 377 65.8
ECA246G2307 Erigeron canadensis HOM05D006028 ORTHO05D007784 7.1e-135 484.6 377 66.6
QL02p051229 Quercus lobata HOM05D006028 ORTHO05D007784 7.1e-135 484.6 376 67.8
Potri.004G099000 Populus trichocarpa HOM05D006028 ORTHO05D007784 7.8e-134 481.1 382 67.5
Atru.chr1.1685 Acer truncatum HOM05D006028 ORTHO05D007784 3.0e-133 479.2 377 67.4
Prupe.3G142900 Prunus persica HOM05D006028 ORTHO05D007784 6.6e-133 478.0 380 65.5
CiPaw.03G061900 Carya illinoinensis HOM05D006028 ORTHO05D007784 7.3e-132 474.6 377 66.8
Cc07_g08770 Coffea canephora HOM05D006028 ORTHO05D007784 7.3e-132 474.6 376 65.2
Nitab4.5_0004416g0010 Nicotiana tabacum HOM05D006028 ORTHO05D007784 9.5e-132 474.2 377 64.5
CANSAT78G1220 Cannabis sativa HOM05D006028 ORTHO05D007784 4.0e-130 468.8 377 65.3
Gorai.008G055200 Gossypium raimondii HOM05D006028 ORTHO05D007784 1.2e-129 467.2 379 66.2
Gohir.D12G052100 Gossypium hirsutum HOM05D006028 ORTHO05D007784 2.6e-129 466.1 379 66.2
Gohir.A12G053400 Gossypium hirsutum HOM05D006028 ORTHO05D007784 7.6e-129 464.5 379 65.7
Aqoxy4G02499 Aquilegia oxysepala HOM05D006028 ORTHO05D007784 9.9e-129 464.2 379 65.2
HanXRQChr12g0375811 Helianthus annuus HOM05D006028 ORTHO05D007784 1.3e-125 453.8 377 63.9
PGR004G1556 Punica granatum HOM05D006028 ORTHO05D007784 3.0e-125 452.6 377 62.1
Migut.H00221 Erythranthe guttata HOM05D006028 ORTHO05D007784 3.9e-125 452.2 377 62.6
COL.COLO4_09340 Corchorus olitorius HOM05D006028 ORTHO05D007784 5.1e-125 451.8 379 65.2
Lsat_1_v5_gn_3_79681 Lactuca sativa HOM05D006028 ORTHO05D007784 1.9e-124 449.9 377 63.1
CsaV3_3G020280 Cucumis sativus L. HOM05D006028 ORTHO05D007784 8.1e-123 444.5 377 60.7
Glyma.14G193600 Glycine max HOM05D006028 ORTHO05D007784 7.6e-121 438.0 377 62.6
Nn3g17886 Nelumbo nucifera HOM05D006028 ORTHO05D007784 1.7e-120 436.8 379 62.0
Duzib138G1322 Durio zibethinus HOM05D006028 ORTHO05D007784 6.4e-120 434.9 379 63.3
PSO017G5051 Papaver somniferum HOM05D006028 ORTHO05D007784 1.9e-119 433.3 382 61.0
MELO3C023751.2 Cucumis melo HOM05D006028 ORTHO05D007784 3.2e-119 432.6 378 59.8
RcHm_v2.0_Chr6g0273571 Rosa chinensis HOM05D006028 ORTHO05D007784 5.4e-119 431.8 375 61.3
Glyma.02G226700 Glycine max HOM05D006028 ORTHO05D007784 4.6e-118 428.7 378 61.9
MSTRG.17981 Avicennia marina HOM05D006028 ORTHO05D007784 1.3e-117 427.2 383 61.6
Hund13711 Selenicereus undatus HOM05D006028 ORTHO05D007784 1.3e-117 427.2 377 60.2
SalBow3G3202 Salvia bowleyana HOM05D006028 ORTHO05D007784 3.9e-117 425.6 396 59.6
VMungo0647G1142 Vigna mungo HOM05D006028 ORTHO05D007784 2.5e-116 422.9 378 61.4
Eucgr.F02499 Eucalyptus grandis HOM05D006028 ORTHO05D007784 3.3e-116 422.5 341 62.8
AUR62023297 Chenopodium quinoa HOM05D006028 ORTHO05D007784 5.6e-116 421.8 381 60.6
SGA_v2.0_scaffold33G13509 Striga asiatica HOM05D006028 ORTHO05D007784 5.6e-116 421.8 379 58.8
FvH4_4g11350 Fragaria vesca HOM05D006028 ORTHO05D007784 7.3e-116 421.4 376 59.6
Phvul.008G261300 Phaseolus vulgaris HOM05D006028 ORTHO05D007784 1.3e-115 420.6 378 61.1
ClCG05G012120 Citrullus lanatus HOM05D006028 ORTHO05D007784 2.1e-115 419.9 377 60.7
EL10Ac2g04560 Beta vulgaris HOM05D006028 ORTHO05D007784 4.8e-115 418.7 379 60.4
FAN07G0954 Fragaria x ananassa HOM05D006028 ORTHO05D007784 4.8e-115 418.7 376 59.0
Lalb_Chr10g0103311 Lupinus albus HOM05D006028 ORTHO05D007784 1.4e-114 417.2 378 60.3
PSO478G1932 Papaver somniferum HOM05D006028 ORTHO05D007784 3.1e-114 416.0 382 59.2
LjContig00155g0021894 Lotus japonicus HOM05D006028 ORTHO05D007784 2.2e-112 409.8 381 59.6
TPR.G23017 Trifolium pratense HOM05D006028 ORTHO05D007784 2.2e-112 409.8 377 60.2
AUR62009005 Chenopodium quinoa HOM05D006028 ORTHO05D007784 4.2e-111 405.6 399 57.6
Peaxi162Scf00394g00620 Petunia axillaris HOM05D006028 ORTHO05D007784 5.4e-111 405.2 377 58.9
AT2G18410 Arabidopsis thaliana HOM05D006028 ORTHO05D007784 2.1e-110 403.3 381 58.8
THA.LOC104820944 Tarenaya hassleriana HOM05D006028 ORTHO05D007784 3.5e-110 402.5 381 58.3
Medtr5g070860 Medicago truncatula HOM05D006028 ORTHO05D007784 4.6e-110 402.1 377 58.4
ATR1125G043 Amborella trichopoda HOM05D006028 ORTHO05D007784 7.9e-110 401.4 390 55.1
Carub.0003s3256 Capsella rubella HOM05D006028 ORTHO05D007784 5.1e-109 398.7 381 58.8
Sabra04G0080900 Salix brachista HOM05D006028 ORTHO05D007784 1.9e-108 396.7 382 57.9
AL3G51690 Arabidopsis lyrata HOM05D006028 ORTHO05D007784 2.5e-108 396.4 384 57.3
Thhalv10022737m.g Eutrema salsugineum HOM05D006028 ORTHO05D007784 2.8e-107 392.9 381 57.0
Sp3g31820 Schrenkiella parvula HOM05D006028 ORTHO05D007784 3.6e-107 392.5 381 57.0
SpUn0030_0010 Schrenkiella parvula HOM05D006028 ORTHO05D007784 3.6e-107 392.5 381 57.0
CARHR109010 Cardamine hirsuta HOM05D006028 ORTHO05D007784 6.2e-107 391.7 382 56.5
A07p02330 Brassica napus HOM05D006028 ORTHO05D007784 8.1e-107 391.3 389 56.8
Ah.16g101740 Amaranthus hybridus HOM05D006028 ORTHO05D007784 1.8e-106 390.2 377 56.2
BcaC06g36407 Brassica carinata HOM05D006028 ORTHO05D007784 3.1e-106 389.4 381 56.7
BraA07t28024Z Brassica rapa HOM05D006028 ORTHO05D007784 6.9e-106 388.3 389 56.3
Aa31LG8G15620 Aethionema arabicum HOM05D006028 ORTHO05D007784 3.4e-105 386.0 382 56.3
BolC7t40839H Brassica oleracea HOM05D006028 ORTHO05D007784 7.6e-105 384.8 385 55.8
C07p04450 Brassica napus HOM05D006028 ORTHO05D007784 1.7e-104 383.6 385 56.4
BcaB03g16641 Brassica carinata HOM05D006028 ORTHO05D007784 1.2e-102 377.5 405 53.6
arahy.Tifrunner.gnm1.ann1.QNRR2Z Arachis hypogaea HOM05D006028 ORTHO05D007784 6.0e-102 375.2 377 57.0
HPP92_018993 Vanilla planifolia HOM05D006028 ORTHO05D007784 1.5e-100 370.5 381 52.0
MD00G1149900 Malus domestica HOM05D006028 ORTHO05D007784 1.9e-100 370.2 347 56.8
arahy.Tifrunner.gnm1.ann1.I9N3Y5 Arachis hypogaea HOM05D006028 ORTHO05D007784 2.1e-99 366.7 377 56.0
CDE05G1052 Ceratophyllum demersum HOM05D006028 ORTHO05D007784 2.5e-92 343.2 383 51.2
Zm00001eb007750 Zea mays HOM05D006028 ORTHO05D007784 2.5e-87 326.6 386 48.2
Os03g0201700 Oryza sativa ssp. japonica HOM05D006028 ORTHO05D007784 1.6e-86 323.9 385 45.7
Sc10g0001120 Simmondsia chinensis HOM05D006028 ORTHO05D007784 6.3e-83 312.0 263 62.4
Sed0006429 Sechium edule HOM05D006028 ORTHO05D007784 1.5e-81 307.4 282 58.5
Hma1.2p1_1109F.1_g258050 Hydrangea macrophylla HOM05D006028 ORTHO05D007784 2.0e-81 307.0 199 77.4
Psat0s2922g0040 Pisum sativum HOM05D006028 ORTHO05D007784 1.5e-73 280.8 261 55.9
Pp3c5_13580 Physcomitrium patens HOM05D006028 ORTHO05D007784 1.3e-72 277.7 391 43.2
Haze_14159 Corylus avellana HOM05D006028 ORTHO05D007784 1.2e-70 271.2 224 66.5
Ca_05599_v3 Cicer arietinum L. HOM05D006028 ORTHO05D007784 1.4e-69 267.7 330 51.2
Mapoly0156s0014 Marchantia polymorpha HOM05D006028 ORTHO05D007784 5.3e-66 255.8 392 42.1
Hma1.2p1_1109F.1_g258070 Hydrangea macrophylla HOM05D006028 ORTHO05D007784 1.2e-60 238.0 169 73.4
SMO351G0506 Selaginella moellendorffii HOM05D006028 ORTHO05D007784 4.5e-57 226.1 381 41.5
Solyc02g086100.4 Solanum lycopersicum HOM05D006028 ORTHO05D007784 1.1e-55 221.5 168 70.2
unitig_748.g7283 Utricularia gibba HOM05D006028 ORTHO05D007784 7.2e-55 218.8 380 40.0
QL02p051191 Quercus lobata HOM05D006028 ORTHO05D007784 1.3e-51 208.0 170 65.3
SEGI_33346 Sequoiadendron giganteum HOM05D006028 ORTHO05D007784 4.8e-51 206.1 233 48.5
RcHm_v2.0_Chr1g0332721 Rosa chinensis HOM05D006028 ORTHO05D007784 8.3e-51 205.3 178 59.6
Potri.017G115566 Populus trichocarpa HOM05D006028 ORTHO05D007784 2.0e-49 200.7 166 62.7
SHI29124 Sapria himalayana HOM05D006028 ORTHO05D007784 2.3e-45 187.2 275 41.8
SMO009G0016 Selaginella moellendorffii HOM05D006028 ORTHO05D007784 5.2e-45 186.0 378 38.4
Gorai.007G000700 Gossypium raimondii HOM05D006028 ORTHO05D007784 5.7e-36 156.0 160 56.9
Cpa.g.sc282.2 Carica papaya HOM05D006028 ORTHO05D007784 6.4e-35 152.5 192 49.0
Gohir.1Z049310 Gossypium hirsutum HOM05D006028 ORTHO05D007784 5.4e-34 149.4 189 45.0
Gohir.A09G249300 Gossypium hirsutum HOM05D006028 ORTHO05D007784 5.4e-34 149.4 189 44.4
Sabra17G0095800 Salix brachista HOM05D006028 ORTHO05D007784 5.9e-33 146.0 169 55.0
FAN17G0046 Fragaria x ananassa HOM05D006028 ORTHO05D007784 5.0e-32 142.9 158 52.5
AagrBONN_evm.TU.Sc2ySwM_368.1688 Anthoceros agrestis HOM05D006028 ORTHO05D007784 7.3e-23 112.5 144 50.0
AagrBONN_evm.TU.Sc2ySwM_368.1687 Anthoceros agrestis HOM05D006028 ORTHO05D007784 1.4e-21 108.2 165 34.5
Gohir.A06G000200 Gossypium hirsutum HOM05D006028 ORTHO05D007784 1.3e-16 91.7 92 50.0
Gohir.A12G000400 Gossypium hirsutum HOM05D006028 ORTHO05D007784 1.3e-16 91.7 92 50.0
SEGI_36511 Sequoiadendron giganteum HOM05D006028 ORTHO05D007784 2.3e-16 90.9 88 52.3
Nitab4.5_0014016g0010 Nicotiana tabacum HOM05D006028 ORTHO05D007784 3.9e-16 90.1 82 52.4
QL02p051195 Quercus lobata HOM05D006028 ORTHO05D007784 9.5e-15 85.5 69 59.4
Gohir.A01G231820 Gossypium hirsutum HOM05D006028 ORTHO05D007784 2.7e-09 67.4 67 52.2
CBR_g37698 Chara braunii HOM05D006028 ORTHO05D007784 8.6e-08 62.4 430 23.5


User provided reference genes

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