Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040245 Camellia sinensis var. sinensis HOM05D005637 ORTHO05D006983 8.2e-34 146.4 68 100.0
Dinv10648 Davidia involucrata HOM05D005637 ORTHO05D006983 5.7e-27 123.6 62 93.5
Atru.chr9.197 Acer truncatum HOM05D005637 ORTHO05D006983 9.7e-27 122.9 62 91.9
CDE02G3019 Ceratophyllum demersum HOM05D005637 ORTHO05D006983 9.7e-27 122.9 62 91.9
CSS0030079 Camellia sinensis var. sinensis HOM05D005637 ORTHO05D006983 2.2e-26 121.7 62 91.9
MD00G1081600 Malus domestica HOM05D005637 ORTHO05D006983 2.2e-26 121.7 62 90.3
TWI75G0754 Tripterygium wilfordii HOM05D005637 ORTHO05D006983 2.2e-26 121.7 62 91.9
Cpa.g.sc57.35 Carica papaya HOM05D005637 ORTHO05D006983 2.8e-26 121.3 62 90.3
Migut.I00202 Erythranthe guttata HOM05D005637 ORTHO05D006983 2.8e-26 121.3 62 90.3
Rhsim08G0152700 Rhododendron simsii HOM05D005637 ORTHO05D006983 2.8e-26 121.3 62 90.3
Sabra08G0067300 Salix brachista HOM05D005637 ORTHO05D006983 2.8e-26 121.3 62 88.7
Sed0018902 Sechium edule HOM05D005637 ORTHO05D006983 2.8e-26 121.3 62 91.9
SGA_v2.0_scaffold313G48341 Striga asiatica HOM05D005637 ORTHO05D006983 2.8e-26 121.3 62 90.3
unitig_748.g7812 Utricularia gibba HOM05D005637 ORTHO05D006983 2.8e-26 121.3 62 90.3
ATR0564G491 Amborella trichopoda HOM05D005637 ORTHO05D006983 3.7e-26 120.9 62 90.3
AL1G39180 Arabidopsis lyrata HOM05D005637 ORTHO05D006983 3.7e-26 120.9 62 90.3
AT1G26550 Arabidopsis thaliana HOM05D005637 ORTHO05D006983 3.7e-26 120.9 62 90.3
BcaB03g11995 Brassica carinata HOM05D005637 ORTHO05D006983 3.7e-26 120.9 62 90.3
A08p27370 Brassica napus HOM05D005637 ORTHO05D006983 3.7e-26 120.9 62 90.3
A09p39930 Brassica napus HOM05D005637 ORTHO05D006983 3.7e-26 120.9 62 90.3
C05p24490 Brassica napus HOM05D005637 ORTHO05D006983 3.7e-26 120.9 62 90.3
BolC5t31183H Brassica oleracea HOM05D005637 ORTHO05D006983 3.7e-26 120.9 62 90.3
BraA08t34678Z Brassica rapa HOM05D005637 ORTHO05D006983 3.7e-26 120.9 62 90.3
BraA09t39492Z Brassica rapa HOM05D005637 ORTHO05D006983 3.7e-26 120.9 62 90.3
CiPaw.11G046600 Carya illinoinensis HOM05D005637 ORTHO05D006983 3.7e-26 120.9 62 90.3
Mapoly0082s0039 Marchantia polymorpha HOM05D005637 ORTHO05D006983 3.7e-26 120.9 62 90.3
Prupe.1G278400 Prunus persica HOM05D005637 ORTHO05D006983 3.7e-26 120.9 62 88.7
VMungo1309G0753 Vigna mungo HOM05D005637 ORTHO05D006983 3.7e-26 120.9 62 90.3
CARHR025420 Cardamine hirsuta HOM05D005637 ORTHO05D006983 4.8e-26 120.6 62 88.7
Glyma.04G166700 Glycine max HOM05D005637 ORTHO05D006983 4.8e-26 120.6 62 90.3
Glyma.06G195800 Glycine max HOM05D005637 ORTHO05D006983 4.8e-26 120.6 62 90.3
Nn2g15887 Nelumbo nucifera HOM05D005637 ORTHO05D006983 4.8e-26 120.6 62 90.3
Psat5g200400 Pisum sativum HOM05D005637 ORTHO05D006983 4.8e-26 120.6 62 90.3
DCAR_026064 Daucus carota HOM05D005637 ORTHO05D006983 6.3e-26 120.2 62 88.7
Hma1.2p1_0060F.1_g033550 Hydrangea macrophylla HOM05D005637 ORTHO05D006983 6.3e-26 120.2 62 88.7
Actinidia04874 Actinidia chinensis HOM05D005637 ORTHO05D006983 8.2e-26 119.8 62 91.9
Thhalv10009046m.g Eutrema salsugineum HOM05D005637 ORTHO05D006983 8.2e-26 119.8 62 88.7
Phvul.009G185800 Phaseolus vulgaris HOM05D005637 ORTHO05D006983 8.2e-26 119.8 62 88.7
Sp1g22230 Schrenkiella parvula HOM05D005637 ORTHO05D006983 8.2e-26 119.8 62 88.7
Aqoxy3G03463 Aquilegia oxysepala HOM05D005637 ORTHO05D006983 1.1e-25 119.4 62 88.7
Carub.0001s2449 Capsella rubella HOM05D005637 ORTHO05D006983 1.1e-25 119.4 62 88.7
Ciclev10022740m.g Citrus clementina HOM05D005637 ORTHO05D006983 1.1e-25 119.4 62 88.7
MELO3C002951.2 Cucumis melo HOM05D005637 ORTHO05D006983 1.1e-25 119.4 62 90.3
CANSAT80G1152 Cannabis sativa HOM05D005637 ORTHO05D006983 1.4e-25 119.0 62 88.7
Ca_14657_v3 Cicer arietinum L. HOM05D005637 ORTHO05D006983 1.4e-25 119.0 62 88.7
ClCG09G021890 Citrullus lanatus HOM05D005637 ORTHO05D006983 1.4e-25 119.0 62 90.3
Lalb_Chr08g0235561 Lupinus albus HOM05D005637 ORTHO05D006983 1.4e-25 119.0 62 88.7
Medtr3g037570 Medicago truncatula HOM05D005637 ORTHO05D006983 1.4e-25 119.0 62 88.7
TPR.G11903 Trifolium pratense HOM05D005637 ORTHO05D006983 1.4e-25 119.0 62 88.7
arahy.Tifrunner.gnm1.ann1.M53U4W Arachis hypogaea HOM05D005637 ORTHO05D006983 1.8e-25 118.6 62 87.1
Eucgr.G02481 Eucalyptus grandis HOM05D005637 ORTHO05D006983 1.8e-25 118.6 62 88.7
FvH4_4g30970 Fragaria vesca HOM05D005637 ORTHO05D006983 1.8e-25 118.6 62 88.7
FAN07G0507 Fragaria x ananassa HOM05D005637 ORTHO05D006983 1.8e-25 118.6 62 88.7
FAN12G2219 Fragaria x ananassa HOM05D005637 ORTHO05D006983 1.8e-25 118.6 62 88.7
FAN17G1506 Fragaria x ananassa HOM05D005637 ORTHO05D006983 1.8e-25 118.6 62 88.7
FAN22G0476 Fragaria x ananassa HOM05D005637 ORTHO05D006983 1.8e-25 118.6 62 88.7
Nitab4.5_0001195g0050 Nicotiana tabacum HOM05D005637 ORTHO05D006983 1.8e-25 118.6 62 88.7
Nitab4.5_0001997g0100 Nicotiana tabacum HOM05D005637 ORTHO05D006983 1.8e-25 118.6 62 88.7
QL10p017509 Quercus lobata HOM05D005637 ORTHO05D006983 1.8e-25 118.6 61 88.5
Solyc12g036200.2 Solanum lycopersicum HOM05D005637 ORTHO05D006983 1.8e-25 118.6 62 88.7
Sopen12g016310 Solanum pennellii HOM05D005637 ORTHO05D006983 1.8e-25 118.6 62 88.7
PGSC0003DMG400021937 Solanum tuberosum HOM05D005637 ORTHO05D006983 1.8e-25 118.6 62 88.7
AagrBONN_evm.TU.Sc2ySwM_228.632 Anthoceros agrestis HOM05D005637 ORTHO05D006983 2.4e-25 118.2 62 87.1
AagrBONN_evm.TU.Sc2ySwM_362.586 Anthoceros agrestis HOM05D005637 ORTHO05D006983 2.4e-25 118.2 62 87.1
C03p72380 Brassica napus HOM05D005637 ORTHO05D006983 2.4e-25 118.2 60 90.0
BolC3t19533H Brassica oleracea HOM05D005637 ORTHO05D006983 2.4e-25 118.2 60 90.0
Cc00_g08390 Coffea canephora HOM05D005637 ORTHO05D006983 2.4e-25 118.2 62 88.7
Oeu052447.1 Olea europaea HOM05D005637 ORTHO05D006983 2.4e-25 118.2 62 90.3
Thecc.03G093000 Theobroma cacao HOM05D005637 ORTHO05D006983 2.4e-25 118.2 62 88.7
CsaV3_5G025290 Cucumis sativus L. HOM05D005637 ORTHO05D006983 3.1e-25 117.9 62 88.7
Sc04g0002850 Simmondsia chinensis HOM05D005637 ORTHO05D006983 3.1e-25 117.9 62 87.1
TAR496G0002 Trochodendron aralioides HOM05D005637 ORTHO05D006983 3.1e-25 117.9 62 88.7
TAR629G0341 Trochodendron aralioides HOM05D005637 ORTHO05D006983 3.1e-25 117.9 62 88.7
GSVIVG01007979001 Vitis vinifera HOM05D005637 ORTHO05D006983 3.1e-25 117.9 62 88.7
Duzib205G1800 Durio zibethinus HOM05D005637 ORTHO05D006983 4.1e-25 117.5 62 88.7
Manes.14G080801 Manihot esculenta HOM05D005637 ORTHO05D006983 4.1e-25 117.5 62 88.7
Os09g0411700 Oryza sativa ssp. japonica HOM05D005637 ORTHO05D006983 4.1e-25 117.5 62 87.1
PGR119G0762 Punica granatum HOM05D005637 ORTHO05D006983 4.1e-25 117.5 62 88.7
arahy.Tifrunner.gnm1.ann1.KT0WW2 Arachis hypogaea HOM05D005637 ORTHO05D006983 5.3e-25 117.1 62 85.5
LjContig00102g0010410 Lotus japonicus HOM05D005637 ORTHO05D006983 5.3e-25 117.1 62 88.7
LjContig00103g0026967 Lotus japonicus HOM05D005637 ORTHO05D006983 5.3e-25 117.1 62 88.7
Potri.008G089900 Populus trichocarpa HOM05D005637 ORTHO05D006983 5.3e-25 117.1 62 85.5
RcHm_v2.0_Chr4g0439331 Rosa chinensis HOM05D005637 ORTHO05D006983 5.3e-25 117.1 62 87.1
CAN.G648.12 Capsicum annuum HOM05D005637 ORTHO05D006983 7.0e-25 116.7 62 87.1
PSO832G2445 Papaver somniferum HOM05D005637 ORTHO05D006983 7.0e-25 116.7 62 88.7
THA.LOC104822041 Tarenaya hassleriana HOM05D005637 ORTHO05D006983 7.0e-25 116.7 62 88.7
HanXRQChr04g0107301 Helianthus annuus HOM05D005637 ORTHO05D006983 9.1e-25 116.3 62 87.1
MBI04_g11434_MAGBIO Magnolia biondii HOM05D005637 ORTHO05D006983 9.1e-25 116.3 61 85.2
Pp3c26_7640 Physcomitrium patens HOM05D005637 ORTHO05D006983 9.1e-25 116.3 62 87.1
SMO367G1093 Selaginella moellendorffii HOM05D005637 ORTHO05D006983 9.1e-25 116.3 62 85.5
Hund02632 Selenicereus undatus HOM05D005637 ORTHO05D006983 9.1e-25 116.3 66 81.8
CBR_g30502 Chara braunii HOM05D005637 ORTHO05D006983 1.2e-24 115.9 62 85.5
ECA247G3019 Erigeron canadensis HOM05D005637 ORTHO05D006983 1.2e-24 115.9 62 87.1
COL.COLO4_36923 Corchorus olitorius HOM05D005637 ORTHO05D006983 1.6e-24 115.5 62 87.1
Duzib068G0698 Durio zibethinus HOM05D005637 ORTHO05D006983 1.6e-24 115.5 62 87.1
Gohir.A07G064200 Gossypium hirsutum HOM05D005637 ORTHO05D006983 2.6e-24 114.8 62 85.5
Gohir.D07G069000 Gossypium hirsutum HOM05D005637 ORTHO05D006983 2.6e-24 114.8 62 85.5
Gorai.001G072500 Gossypium raimondii HOM05D005637 ORTHO05D006983 2.6e-24 114.8 62 85.5
Peaxi162Scf00106g00427 Petunia axillaris HOM05D005637 ORTHO05D006983 4.5e-24 114.0 62 83.9
EL10Ac5g11048 Beta vulgaris HOM05D005637 ORTHO05D006983 5.9e-24 113.6 60 86.7
Zm00001eb312430 Zea mays HOM05D005637 ORTHO05D006983 2.9e-23 111.3 62 82.3
AUR62008440 Chenopodium quinoa HOM05D005637 ORTHO05D006983 6.1e-21 103.6 62 74.2
CSS0006784 Camellia sinensis var. sinensis HOM05D005637 ORTHO05D006983 1.4e-20 102.4 56 87.5
CANSAT80G0999 Cannabis sativa HOM05D005637 ORTHO05D006983 1.8e-20 102.1 76 68.4
CSS0019959 Camellia sinensis var. sinensis HOM05D005637 ORTHO05D006983 3.0e-20 101.3 56 83.9
Haze_07302 Corylus avellana HOM05D005637 ORTHO05D006983 4.0e-20 100.9 53 84.9
CSS0007590 Camellia sinensis var. sinensis HOM05D005637 ORTHO05D006983 5.2e-20 100.5 59 78.0
BolC7t42459H Brassica oleracea HOM05D005637 ORTHO05D006983 1.2e-19 99.4 62 77.4
BcaC01g01741 Brassica carinata HOM05D005637 ORTHO05D006983 2.6e-19 98.2 51 86.3
MBI02_g20483_MAGBIO Magnolia biondii HOM05D005637 ORTHO05D006983 5.7e-19 97.1 49 87.8
vmacro17563 Vaccinium macrocarpon HOM05D005637 ORTHO05D006983 9.7e-19 96.3 49 87.8
C07p19400 Brassica napus HOM05D005637 ORTHO05D006983 1.3e-18 95.9 62 75.8
HPP92_011002 Vanilla planifolia HOM05D005637 ORTHO05D006983 1.3e-18 95.9 53 81.1
CSS0002747 Camellia sinensis var. sinensis HOM05D005637 ORTHO05D006983 2.2e-18 95.1 49 89.8
Sabra10G0125900 Salix brachista HOM05D005637 ORTHO05D006983 1.8e-17 92.0 48 85.4
Ah.02g113670 Amaranthus hybridus HOM05D005637 ORTHO05D006983 2.4e-17 91.7 47 87.2
Ah.02g113660 Amaranthus hybridus HOM05D005637 ORTHO05D006983 4.1e-17 90.9 47 89.4
LjContig00261g0007071 Lotus japonicus HOM05D005637 ORTHO05D006983 7.2e-14 80.1 42 85.7
BcaC06g35140 Brassica carinata HOM05D005637 ORTHO05D006983 9.4e-14 79.7 50 76.0
AUR62021650 Chenopodium quinoa HOM05D005637 ORTHO05D006983 2.1e-13 78.6 42 81.0
SalBow5G0960 Salvia bowleyana HOM05D005637 ORTHO05D006983 2.6e-11 71.6 54 68.5
Lsat_1_v5_gn_1_14240 Lactuca sativa HOM05D005637 ORTHO05D006983 9.8e-11 69.7 30 96.7
TAR365G0307 Trochodendron aralioides HOM05D005637 ORTHO05D006983 8.3e-10 66.6 32 87.5
MCO13G336 Micromonas commoda HOM05D006179 ORTHO05D008370 1.2e-08 62.8 54 55.6
BcaC03g15376 Brassica carinata HOM05D005637 ORTHO05D006983 2.7e-08 61.6 34 79.4
MCO16G521 Micromonas commoda HOM05D005637 ORTHO05D006983 5.9e-08 60.5 58 48.3
Pp3c20_23120 Physcomitrium patens HOM05D000811 ORTHO05D004743 1.3e-07 59.3 55 50.9
AagrBONN_evm.TU.Sc2ySwM_228.1572 Anthoceros agrestis HOM05D000811 ORTHO05D004743 1.7e-07 58.9 55 50.9
Haze_26720 Corylus avellana HOM05D000811 ORTHO05D004743 1.7e-07 58.9 54 51.9
CDE05G3463 Ceratophyllum demersum HOM05D000811 ORTHO05D004743 2.3e-07 58.5 57 50.9
CDE02G4615 Ceratophyllum demersum HOM05D000811 ORTHO05D004743 2.9e-07 58.2 55 52.7
CDE09G0022 Ceratophyllum demersum HOM05D000811 ORTHO05D004743 8.6e-07 56.6 55 50.9
Migut.H01149 Erythranthe guttata HOM05D000811 ORTHO05D004743 8.6e-07 56.6 57 50.9
MBI05_g26504_MAGBIO Magnolia biondii HOM05D000811 ORTHO05D004743 8.6e-07 56.6 55 49.1
Haze_26617 Corylus avellana HOM05D006179 ORTHO05D164269 1.1e-06 56.2 62 45.2
Pp3c10_25090 Physcomitrium patens HOM05D000811 ORTHO05D004743 1.5e-06 55.8 55 49.1
Zm00001eb067280 Zea mays HOM05D000811 ORTHO05D004743 1.5e-06 55.8 54 51.9
Cre16.g671900 Chlamydomonas reinhardtii HOM05D000811 ORTHO05D004743 1.9e-06 55.5 55 49.1
SMO146G0274 Selaginella moellendorffii HOM05D000811 ORTHO05D004743 3.3e-06 54.7 55 47.3
Cc07_g10610 Coffea canephora HOM05D000811 ORTHO05D004743 4.2e-06 54.3 55 47.3
HPP92_002102 Vanilla planifolia HOM05D000811 ORTHO05D004743 4.2e-06 54.3 55 47.3
PRCOL_00002510 Prasinoderma coloniale HOM05D009714 ORTHO05D004743 5.5e-06 53.9 58 46.6
PGSC0003DMG400001617 Solanum tuberosum HOM05D000811 ORTHO05D004743 5.5e-06 53.9 57 45.6
ATR0147G012 Amborella trichopoda HOM05D000811 ORTHO05D004743 7.2e-06 53.5 55 47.3
MSTRG.2701 Avicennia marina HOM05D000811 ORTHO05D004743 9.5e-06 53.1 54 48.1
COL.COLO4_21930 Corchorus olitorius HOM05D000811 ORTHO05D004743 9.5e-06 53.1 55 43.6
Lalb_Chr05g0229881 Lupinus albus HOM05D000811 ORTHO05D004743 9.5e-06 53.1 54 48.1
Lalb_Chr16g0391191 Lupinus albus HOM05D000811 ORTHO05D004743 9.5e-06 53.1 54 48.1
PGR102G1785 Punica granatum HOM05D000811 ORTHO05D004743 9.5e-06 53.1 55 47.3
Solyc01g110530.3 Solanum lycopersicum HOM05D000811 ORTHO05D004743 9.5e-06 53.1 55 45.5
Sopen01g052660 Solanum pennellii HOM05D000811 ORTHO05D004743 9.5e-06 53.1 55 45.5
unitig_699.g19711 Utricularia gibba HOM05D000811 ORTHO05D004743 9.5e-06 53.1 55 45.5


User provided reference genes

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