Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040242 Camellia sinensis var. sinensis HOM05D002169 ORTHO05D024709 1.6e-73 279.3 134 100.0
CSS0014674 Camellia sinensis var. sinensis HOM05D002169 ORTHO05D024709 7.5e-39 164.1 116 73.3
CSS0017896 Camellia sinensis var. sinensis HOM05D002169 ORTHO05D024709 7.5e-39 164.1 116 73.3
CSS0014084 Camellia sinensis var. sinensis HOM05D002169 ORTHO05D024709 1.3e-38 163.3 162 59.9
CSS0008574 Camellia sinensis var. sinensis HOM05D002169 ORTHO05D006577 3.2e-13 79.0 52 82.7
CANSAT64G0090 Cannabis sativa HOM05D002169 ORTHO05D006577 1.2e-12 77.0 52 78.8
Duzib147G0840 Durio zibethinus HOM05D002169 ORTHO05D006577 1.2e-12 77.0 52 78.8
Gohir.A07G171800 Gossypium hirsutum HOM05D002169 ORTHO05D006577 1.2e-12 77.0 52 78.8
Gohir.D07G178500 Gossypium hirsutum HOM05D002169 ORTHO05D006577 1.2e-12 77.0 52 78.8
Thecc.01G003600 Theobroma cacao HOM05D002169 ORTHO05D006577 1.2e-12 77.0 52 78.8
Aqoxy6G01571 Aquilegia oxysepala HOM05D002169 ORTHO05D006577 1.6e-12 76.6 52 78.8
Gorai.001G199700 Gossypium raimondii HOM05D002169 ORTHO05D006577 1.6e-12 76.6 52 78.8
Oeu012456.1 Olea europaea HOM05D002169 ORTHO05D006577 1.6e-12 76.6 52 78.8
Rhsim10G0192800 Rhododendron simsii HOM05D002169 ORTHO05D006577 2.1e-12 76.3 52 78.8
unitig_747.g21786 Utricularia gibba HOM05D002169 ORTHO05D006577 2.1e-12 76.3 52 76.9
Aa31LG8G14800 Aethionema arabicum HOM05D002169 ORTHO05D006577 2.7e-12 75.9 51 78.4
AL3G50440 Arabidopsis lyrata HOM05D002169 ORTHO05D006577 2.7e-12 75.9 51 78.4
Carub.0003s3157 Capsella rubella HOM05D002169 ORTHO05D006577 2.7e-12 75.9 51 78.4
Migut.L00778 Erythranthe guttata HOM05D002169 ORTHO05D006577 2.7e-12 75.9 52 76.9
Actinidia17335 Actinidia chinensis HOM05D002169 ORTHO05D006577 3.5e-12 75.5 52 78.8
Actinidia22888 Actinidia chinensis HOM05D002169 ORTHO05D006577 3.5e-12 75.5 52 78.8
Cc07_g12000 Coffea canephora HOM05D002169 ORTHO05D006577 3.5e-12 75.5 52 76.9
Atru.chr3.27 Acer truncatum HOM05D002169 ORTHO05D006577 4.6e-12 75.1 52 78.8
vmacro20619 Vaccinium macrocarpon HOM05D002169 ORTHO05D006577 6.0e-12 74.7 36 100.0
MSTRG.3634 Avicennia marina HOM05D002169 ORTHO05D006577 7.8e-12 74.3 52 75.0
BcaB07g31725 Brassica carinata HOM05D002169 ORTHO05D006577 7.8e-12 74.3 36 97.2
BcaC04g22967 Brassica carinata HOM05D002169 ORTHO05D006577 7.8e-12 74.3 36 97.2
A09p11420 Brassica napus HOM05D002169 ORTHO05D006577 7.8e-12 74.3 36 97.2
C09p13440 Brassica napus HOM05D002169 ORTHO05D006577 7.8e-12 74.3 36 97.2
BolC9t54234H Brassica oleracea HOM05D002169 ORTHO05D006577 7.8e-12 74.3 36 97.2
BraA09t36782Z Brassica rapa HOM05D002169 ORTHO05D006577 7.8e-12 74.3 36 97.2
CAN.G1238.30 Capsicum annuum HOM05D002169 ORTHO05D006577 7.8e-12 74.3 36 97.2
Cpa.g.sc6.358 Carica papaya HOM05D002169 ORTHO05D006577 7.8e-12 74.3 36 97.2
AUR62003736 Chenopodium quinoa HOM05D002169 ORTHO05D006577 7.8e-12 74.3 36 97.2
AUR62016565 Chenopodium quinoa HOM05D002169 ORTHO05D006577 7.8e-12 74.3 36 97.2
COL.COLO4_22562 Corchorus olitorius HOM05D002169 ORTHO05D006577 7.8e-12 74.3 36 97.2
Thhalv10022534m.g Eutrema salsugineum HOM05D002169 ORTHO05D006577 7.8e-12 74.3 36 97.2
Nitab4.5_0001467g0120 Nicotiana tabacum HOM05D002169 ORTHO05D006577 7.8e-12 74.3 36 97.2
Peaxi162Scf00040g03136 Petunia axillaris HOM05D002169 ORTHO05D006577 7.8e-12 74.3 36 97.2
Sp3g30870 Schrenkiella parvula HOM05D002169 ORTHO05D006577 7.8e-12 74.3 36 97.2
Hund19690 Selenicereus undatus HOM05D002169 ORTHO05D006577 7.8e-12 74.3 52 76.9
Solyc02g082460.3 Solanum lycopersicum HOM05D002169 ORTHO05D006577 7.8e-12 74.3 36 97.2
Sopen02g027150 Solanum pennellii HOM05D002169 ORTHO05D006577 7.8e-12 74.3 36 97.2
THA.LOC104819712 Tarenaya hassleriana HOM05D002169 ORTHO05D006577 7.8e-12 74.3 36 97.2
HPP92_021382 Vanilla planifolia HOM05D002169 ORTHO05D006577 7.8e-12 74.3 36 97.2
EL10Ac6g15040 Beta vulgaris HOM05D002169 ORTHO05D006577 1.0e-11 73.9 52 75.0
Nitab4.5_0008533g0010 Nicotiana tabacum HOM05D002169 ORTHO05D006577 1.0e-11 73.9 44 81.8
PGR004G0941 Punica granatum HOM05D002169 ORTHO05D006577 1.0e-11 73.9 52 75.0
QL06p053209 Quercus lobata HOM05D002169 ORTHO05D006577 1.0e-11 73.9 52 76.9
TWI73G1258 Tripterygium wilfordii HOM05D002169 ORTHO05D006577 1.0e-11 73.9 52 75.0
Ciclev10024818m.g Citrus clementina HOM05D002169 ORTHO05D006577 1.3e-11 73.6 52 76.9
Prupe.7G185100 Prunus persica HOM05D002169 ORTHO05D006577 1.3e-11 73.6 52 75.0
Sc10g0009280 Simmondsia chinensis HOM05D002169 ORTHO05D006577 1.3e-11 73.6 51 76.5
CARHR107670 Cardamine hirsuta HOM05D002169 ORTHO05D006577 1.7e-11 73.2 51 74.5
BcaB03g16519 Brassica carinata HOM05D002169 ORTHO05D006577 2.3e-11 72.8 36 94.4
DCAR_019080 Daucus carota HOM05D002169 ORTHO05D006577 2.3e-11 72.8 36 94.4
CiPaw.07G001100 Carya illinoinensis HOM05D002169 ORTHO05D006577 3.0e-11 72.4 52 73.1
Lj4A238G77 Lonicera japonica HOM05D002169 ORTHO05D006577 3.0e-11 72.4 51 74.5
PSO675G7681 Papaver somniferum HOM05D002169 ORTHO05D006577 3.0e-11 72.4 52 73.1
Sabra07G0050400 Salix brachista HOM05D002169 ORTHO05D006577 3.9e-11 72.0 36 94.4
CDE06G1921 Ceratophyllum demersum HOM05D002169 ORTHO05D006577 5.1e-11 71.6 52 75.0
Haze_03631 Corylus avellana HOM05D002169 ORTHO05D006577 5.1e-11 71.6 36 94.4
Dinv28311 Davidia involucrata HOM05D002169 ORTHO05D006577 5.1e-11 71.6 52 75.0
ECA238G3790 Erigeron canadensis HOM05D002169 ORTHO05D006577 5.1e-11 71.6 36 88.9
Eucgr.J00205 Eucalyptus grandis HOM05D002169 ORTHO05D006577 5.1e-11 71.6 51 74.5
HanXRQChr14g0443111 Helianthus annuus HOM05D002169 ORTHO05D006577 5.1e-11 71.6 36 88.9
Lsat_1_v5_gn_2_73920 Lactuca sativa HOM05D002169 ORTHO05D006577 5.1e-11 71.6 36 88.9
Manes.01G156500 Manihot esculenta HOM05D002169 ORTHO05D006577 5.1e-11 71.6 36 94.4
Potri.007G059100 Populus trichocarpa HOM05D002169 ORTHO05D006577 5.1e-11 71.6 36 94.4
SalBow6G5571 Salvia bowleyana HOM05D002169 ORTHO05D006577 5.1e-11 71.6 36 91.7
SHI29554 Sapria himalayana HOM05D002169 ORTHO05D006577 5.1e-11 71.6 52 73.1
Dinv40201 Davidia involucrata HOM05D002169 ORTHO05D006577 6.6e-11 71.2 52 75.0
MD02G1113900 Malus domestica HOM05D002169 ORTHO05D006577 6.6e-11 71.2 52 73.1
MD15G1229000 Malus domestica HOM05D002169 ORTHO05D006577 6.6e-11 71.2 52 73.1
TAR381G0949 Trochodendron aralioides HOM05D002169 ORTHO05D006577 6.6e-11 71.2 52 73.1
TAR628G0475 Trochodendron aralioides HOM05D002169 ORTHO05D006577 6.6e-11 71.2 52 73.1
FvH4_1g10170 Fragaria vesca HOM05D002169 ORTHO05D006577 8.6e-11 70.9 36 91.7
FAN19G1591 Fragaria x ananassa HOM05D002169 ORTHO05D006577 8.6e-11 70.9 36 91.7
FAN23G0161 Fragaria x ananassa HOM05D002169 ORTHO05D006577 8.6e-11 70.9 36 91.7
FAN23G2634 Fragaria x ananassa HOM05D002169 ORTHO05D006577 8.6e-11 70.9 36 91.7
FAN26G1091 Fragaria x ananassa HOM05D002169 ORTHO05D006577 8.6e-11 70.9 36 91.7
FAN28G2624 Fragaria x ananassa HOM05D002169 ORTHO05D006577 8.6e-11 70.9 36 91.7
Hma1.2p1_0085F.1_g044520 Hydrangea macrophylla HOM05D002169 ORTHO05D006577 8.6e-11 70.9 52 73.1
Lalb_Chr10g0097551 Lupinus albus HOM05D002169 ORTHO05D006577 8.6e-11 70.9 52 75.0
arahy.Tifrunner.gnm1.ann1.DGN8CB Arachis hypogaea HOM05D002169 ORTHO05D006577 1.1e-10 70.5 52 73.1
arahy.Tifrunner.gnm1.ann1.L3E9Q0 Arachis hypogaea HOM05D002169 ORTHO05D006577 1.1e-10 70.5 52 73.1
Cfa013486 Carpinus fangiana HOM05D002169 ORTHO05D006577 1.1e-10 70.5 55 69.1
Nitab4.5_0010278g0010 Nicotiana tabacum HOM05D002169 ORTHO05D024709 1.1e-10 70.5 35 94.3
GSVIVG01022300001 Vitis vinifera HOM05D002169 ORTHO05D006577 1.1e-10 70.5 36 94.4
Cfa007098 Carpinus fangiana HOM05D002169 ORTHO05D006577 1.5e-10 70.1 36 91.7
Ca_02844_v3 Cicer arietinum L. HOM05D002169 ORTHO05D006577 1.9e-10 69.7 52 73.1
Psat4g104600 Pisum sativum HOM05D002169 ORTHO05D006577 1.9e-10 69.7 52 73.1
RcHm_v2.0_Chr2g0096961 Rosa chinensis HOM05D002169 ORTHO05D006577 1.9e-10 69.7 36 88.9
TPR.G13725 Trifolium pratense HOM05D002169 ORTHO05D006577 1.9e-10 69.7 52 73.1
ATR0807G141 Amborella trichopoda HOM05D002169 ORTHO05D006577 2.5e-10 69.3 36 88.9
Lj4g0016756 Lotus japonicus HOM05D002169 ORTHO05D006577 2.5e-10 69.3 52 73.1
Mapoly0081s0047 Marchantia polymorpha HOM05D002169 ORTHO05D006577 2.5e-10 69.3 36 86.1
PSO541G0991 Papaver somniferum HOM05D002169 ORTHO05D006577 2.5e-10 69.3 52 71.2
BcaNung04615 Brassica carinata HOM05D002169 ORTHO05D006577 4.3e-10 68.6 54 64.8
MELO3C018432.2 Cucumis melo HOM05D002169 ORTHO05D006577 5.6e-10 68.2 36 91.7
CsaV3_7G008800 Cucumis sativus L. HOM05D002169 ORTHO05D006577 5.6e-10 68.2 36 91.7
Glyma.04G221900 Glycine max HOM05D002169 ORTHO05D006577 5.6e-10 68.2 36 91.7
Glyma.06G143500 Glycine max HOM05D002169 ORTHO05D006577 5.6e-10 68.2 36 91.7
Phvul.009G142600 Phaseolus vulgaris HOM05D002169 ORTHO05D006577 5.6e-10 68.2 36 91.7
AT2G17510 Arabidopsis thaliana HOM05D002169 ORTHO05D006577 7.3e-10 67.8 51 70.6
Sed0000096 Sechium edule HOM05D002169 ORTHO05D006577 7.3e-10 67.8 36 88.9
SEGI_16039 Sequoiadendron giganteum HOM05D002169 ORTHO05D006577 9.6e-10 67.4 36 86.1
Pp3c16_17530 Physcomitrium patens HOM05D002169 ORTHO05D006577 1.6e-09 66.6 36 83.3
SMO228G0179 Selaginella moellendorffii HOM05D002169 ORTHO05D006577 1.6e-09 66.6 36 83.3
Zm00001eb002260 Zea mays HOM05D002169 ORTHO05D006577 1.6e-09 66.6 36 83.3
Psat0s2855g0160 Pisum sativum HOM05D002169 ORTHO05D006577 6.2e-09 64.7 52 67.3
Medtr8g073170 Medicago truncatula HOM05D002169 ORTHO05D006577 8.1e-09 64.3 52 67.3
AagrBONN_evm.TU.Sc2ySwM_228.1045 Anthoceros agrestis HOM05D002169 ORTHO05D006577 3.1e-08 62.4 36 80.6
PRCOL_00000788 Prasinoderma coloniale HOM05D002169 ORTHO05D006577 1.5e-07 60.1 36 72.2
Cre14.g613850 Chlamydomonas reinhardtii HOM05D002169 ORTHO05D006577 1.7e-06 56.6 36 72.2


User provided reference genes

Program Settings