Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040077 Camellia sinensis var. sinensis HOM05D003881 ORTHO05D004343 0.0e+00 2096.6 1097 100.0
Rhsim03G0228800 Rhododendron simsii HOM05D003881 ORTHO05D004343 0.0e+00 1840.5 1095 87.3
Rhsim01G0044500 Rhododendron simsii HOM05D003881 ORTHO05D004343 0.0e+00 1831.6 1115 85.7
Rhsim01G0044300 Rhododendron simsii HOM05D003881 ORTHO05D004343 0.0e+00 1759.6 1095 84.7
Dinv42377 Davidia involucrata HOM05D003881 ORTHO05D004343 0.0e+00 1749.6 1098 85.1
Nn8g38678 Nelumbo nucifera HOM05D003881 ORTHO05D004343 0.0e+00 1677.5 1096 79.7
Actinidia29923 Actinidia chinensis HOM05D003881 ORTHO05D004343 0.0e+00 1672.1 1085 82.4
Dinv25567 Davidia involucrata HOM05D003881 ORTHO05D004343 0.0e+00 1668.7 1096 81.7
TAR383G1047 Trochodendron aralioides HOM05D003881 ORTHO05D004343 0.0e+00 1653.6 1084 80.2
GSVIVG01015096001 Vitis vinifera HOM05D003881 ORTHO05D004343 0.0e+00 1648.3 1094 79.4
CiPaw.03G207700 Carya illinoinensis HOM05D003881 ORTHO05D004343 0.0e+00 1633.6 1094 78.5
CANSAT56G1084 Cannabis sativa HOM05D003881 ORTHO05D004343 0.0e+00 1625.1 1058 79.2
Prupe.7G201100 Prunus persica HOM05D003881 ORTHO05D004343 0.0e+00 1621.3 1096 76.8
MBI19_g11836_MAGBIO Magnolia biondii HOM05D003881 ORTHO05D004343 0.0e+00 1616.7 1101 77.7
CAN.G457.4 Capsicum annuum HOM05D003881 ORTHO05D004343 0.0e+00 1609.0 1091 78.5
Potri.006G143300 Populus trichocarpa HOM05D003881 ORTHO05D004343 0.0e+00 1600.1 1094 76.1
HanXRQChr12g0354081 Helianthus annuus HOM05D003881 ORTHO05D004343 0.0e+00 1595.5 1088 77.4
COL.COLO4_18111 Corchorus olitorius HOM05D003881 ORTHO05D004343 0.0e+00 1588.9 1096 76.7
CsaV3_1G040850 Cucumis sativus L. HOM05D003881 ORTHO05D004343 0.0e+00 1586.2 1078 76.4
Lj6g0005202 Lotus japonicus HOM05D003881 ORTHO05D004343 0.0e+00 1581.2 1092 77.9
Ca_26333_v3 Cicer arietinum L. HOM05D003881 ORTHO05D004343 0.0e+00 1580.8 1094 77.0
TWI34G0082 Tripterygium wilfordii HOM05D003881 ORTHO05D004343 0.0e+00 1578.9 1077 76.0
arahy.Tifrunner.gnm1.ann1.13CNWC Arachis hypogaea HOM05D003881 ORTHO05D004343 0.0e+00 1578.5 1088 78.2
Sabra06G0112200 Salix brachista HOM05D003881 ORTHO05D004343 0.0e+00 1578.5 1094 75.3
Sabra06G0113500 Salix brachista HOM05D003881 ORTHO05D004343 0.0e+00 1578.5 1094 75.3
arahy.Tifrunner.gnm1.ann1.3W29E4 Arachis hypogaea HOM05D003881 ORTHO05D004343 0.0e+00 1577.4 1104 77.4
Eucgr.C00824 Eucalyptus grandis HOM05D003881 ORTHO05D004343 0.0e+00 1575.8 1094 75.2
Atru.chr7.1693 Acer truncatum HOM05D003881 ORTHO05D004343 0.0e+00 1574.3 1101 76.4
Aqoxy5G02361 Aquilegia oxysepala HOM05D003881 ORTHO05D004343 0.0e+00 1573.5 1098 75.9
MELO3C015512.2 Cucumis melo HOM05D003881 ORTHO05D004343 0.0e+00 1573.1 1078 76.1
Cfa003017 Carpinus fangiana HOM05D003881 ORTHO05D004343 0.0e+00 1568.1 1095 76.3
Psat1g133400 Pisum sativum HOM05D003881 ORTHO05D004343 0.0e+00 1566.2 1094 76.7
Sed0009854 Sechium edule HOM05D003881 ORTHO05D004343 0.0e+00 1566.2 1075 76.7
ECA232G2980 Erigeron canadensis HOM05D003881 ORTHO05D004343 0.0e+00 1559.3 1086 75.9
Glyma.09G068600 Glycine max HOM05D003881 ORTHO05D004343 0.0e+00 1556.6 1095 76.9
Phvul.009G228100 Phaseolus vulgaris HOM05D003881 ORTHO05D004343 0.0e+00 1556.2 1095 76.7
Lj7A685T51 Lonicera japonica HOM05D003881 ORTHO05D004343 0.0e+00 1553.9 978 80.9
FAN26G0375 Fragaria x ananassa HOM05D003881 ORTHO05D004343 0.0e+00 1552.0 1097 75.1
Medtr2g041420 Medicago truncatula HOM05D003881 ORTHO05D004343 0.0e+00 1547.3 1095 75.7
FAN19G1850 Fragaria x ananassa HOM05D003881 ORTHO05D004343 0.0e+00 1544.3 1087 75.4
Manes.16G096500 Manihot esculenta HOM05D003881 ORTHO05D004343 0.0e+00 1541.2 1095 74.7
Haze_25994 Corylus avellana HOM05D003881 ORTHO05D004343 0.0e+00 1540.0 1123 73.9
Lalb_Chr11g0074291 Lupinus albus HOM05D003881 ORTHO05D004343 0.0e+00 1538.5 1096 74.9
Ciclev10007295m.g Citrus clementina HOM05D003881 ORTHO05D004343 0.0e+00 1538.1 1093 74.8
MSTRG.26461 Avicennia marina HOM05D003881 ORTHO05D004343 0.0e+00 1536.5 1110 74.4
MD02G1088500 Malus domestica HOM05D003881 ORTHO05D004343 0.0e+00 1535.8 1095 73.8
Glyma.15G176400 Glycine max HOM05D003881 ORTHO05D004343 0.0e+00 1532.3 1079 76.5
FAN26G1433 Fragaria x ananassa HOM05D003881 ORTHO05D004343 0.0e+00 1530.8 1137 72.4
FvH4_1g08430 Fragaria vesca HOM05D003881 ORTHO05D004343 0.0e+00 1528.8 1087 74.8
ClCG03G015190 Citrullus lanatus HOM05D003881 ORTHO05D004343 0.0e+00 1527.7 1102 73.2
FAN28G2111 Fragaria x ananassa HOM05D003881 ORTHO05D004343 0.0e+00 1527.3 1087 74.5
Sc14g0000600 Simmondsia chinensis HOM05D003881 ORTHO05D004343 0.0e+00 1518.8 1098 74.0
Lsat_1_v5_gn_5_141221 Lactuca sativa HOM05D003881 ORTHO05D004343 0.0e+00 1511.1 1112 72.4
QL11p000475 Quercus lobata HOM05D003881 ORTHO05D004343 0.0e+00 1511.1 1200 69.2
DCAR_031930 Daucus carota HOM05D003881 ORTHO05D004343 0.0e+00 1509.2 1090 74.1
PGR142G3183 Punica granatum HOM05D003881 ORTHO05D004343 0.0e+00 1502.6 1099 73.1
Haze_25986 Corylus avellana HOM05D003881 ORTHO05D004343 0.0e+00 1496.5 1123 72.5
RcHm_v2.0_Chr2g0094531 Rosa chinensis HOM05D003881 ORTHO05D004343 0.0e+00 1496.5 1089 73.6
Thecc.09G079000 Theobroma cacao HOM05D003881 ORTHO05D004343 0.0e+00 1489.6 868 84.3
Gorai.001G015300 Gossypium raimondii HOM05D003881 ORTHO05D004343 0.0e+00 1483.8 869 83.4
Hund26018 Selenicereus undatus HOM05D003881 ORTHO05D004343 0.0e+00 1482.6 1087 71.8
Gohir.D07G014500 Gossypium hirsutum HOM05D003881 ORTHO05D004343 0.0e+00 1481.8 869 83.3
Gohir.A07G014800 Gossypium hirsutum HOM05D003881 ORTHO05D004343 0.0e+00 1481.1 869 83.2
TPR.G28668 Trifolium pratense HOM05D003881 ORTHO05D004343 0.0e+00 1480.7 1056 74.3
Migut.L01552 Erythranthe guttata HOM05D003881 ORTHO05D004343 0.0e+00 1478.4 1117 71.5
PSO724G0120 Papaver somniferum HOM05D003881 ORTHO05D004343 0.0e+00 1478.0 1050 75.1
Cc06_g12030 Coffea canephora HOM05D003881 ORTHO05D004343 0.0e+00 1473.0 1107 72.9
PSO135G0960 Papaver somniferum HOM05D003881 ORTHO05D004343 0.0e+00 1471.8 1046 74.8
CDE06G1176 Ceratophyllum demersum HOM05D003881 ORTHO05D004343 0.0e+00 1468.0 1102 72.5
THA.LOC104815327 Tarenaya hassleriana HOM05D003881 ORTHO05D004343 0.0e+00 1461.4 1098 70.7
Oeu018066.1 Olea europaea HOM05D003881 ORTHO05D004343 0.0e+00 1455.7 1010 74.7
Nitab4.5_0000343g0070 Nicotiana tabacum HOM05D003881 ORTHO05D004343 0.0e+00 1454.5 1136 70.4
AL3G43760 Arabidopsis lyrata HOM05D003881 ORTHO05D004343 0.0e+00 1453.7 1100 71.2
Thhalv10002377m.g Eutrema salsugineum HOM05D003881 ORTHO05D004343 0.0e+00 1441.0 1072 71.2
Carub.0003s2725 Capsella rubella HOM05D003881 ORTHO05D004343 0.0e+00 1440.2 953 76.7
SGA_v2.0_scaffold21G09481 Striga asiatica HOM05D003881 ORTHO05D004343 0.0e+00 1438.7 1147 70.0
Sp3g24670 Schrenkiella parvula HOM05D003881 ORTHO05D004343 0.0e+00 1426.4 955 74.5
BcaB08g34515 Brassica carinata HOM05D003881 ORTHO05D004343 0.0e+00 1424.5 954 74.8
Nitab4.5_0001488g0030 Nicotiana tabacum HOM05D003881 ORTHO05D004343 0.0e+00 1420.2 1055 73.2
AUR62028984 Chenopodium quinoa HOM05D003881 ORTHO05D004343 0.0e+00 1416.0 1098 68.8
vmacro06329 Vaccinium macrocarpon HOM05D003881 ORTHO05D004343 0.0e+00 1412.9 899 80.4
C03p55630 Brassica napus HOM05D003881 ORTHO05D004343 0.0e+00 1412.1 954 74.4
BolC3t17840H Brassica oleracea HOM05D003881 ORTHO05D004343 0.0e+00 1412.1 954 74.4
A03p44780 Brassica napus HOM05D003881 ORTHO05D004343 0.0e+00 1411.0 954 74.3
Duzib168G2095 Durio zibethinus HOM05D003881 ORTHO05D004343 0.0e+00 1410.6 869 80.6
Aa31sc133G100 Aethionema arabicum HOM05D003881 ORTHO05D004343 0.0e+00 1404.0 987 73.4
ATR0598G033 Amborella trichopoda HOM05D003881 ORTHO05D004343 0.0e+00 1400.6 1102 68.1
EL10Ac8g19107 Beta vulgaris HOM05D003881 ORTHO05D004343 0.0e+00 1397.1 1198 63.9
Ah.14g084990 Amaranthus hybridus HOM05D003881 ORTHO05D004343 0.0e+00 1389.0 1072 68.5
BraA03t13613Z Brassica rapa HOM05D003881 ORTHO05D004343 0.0e+00 1389.0 1096 67.5
Duzib150G0508 Durio zibethinus HOM05D003881 ORTHO05D004343 0.0e+00 1377.5 1097 69.1
DCAR_024741 Daucus carota HOM05D003881 ORTHO05D004343 0.0e+00 1373.6 1253 62.3
SEGI_24391 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 0.0e+00 1367.1 1072 67.2
Oeu041279.1 Olea europaea HOM05D003881 ORTHO05D004343 0.0e+00 1362.1 1050 67.4
BcaC01g03143 Brassica carinata HOM05D003881 ORTHO05D004343 0.0e+00 1359.4 1105 66.0
SalBow4G1287 Salvia bowleyana HOM05D003881 ORTHO05D004343 0.0e+00 1347.0 1143 67.3
AUR62025189 Chenopodium quinoa HOM05D003881 ORTHO05D004343 0.0e+00 1317.4 925 72.8
Zm00001eb073540 Zea mays HOM05D003881 ORTHO05D004343 0.0e+00 1254.6 1085 62.5
Mapoly0010s0036 Marchantia polymorpha HOM05D003881 ORTHO05D004343 0.0e+00 1213.0 880 67.6
SMO143G0189 Selaginella moellendorffii HOM05D003881 ORTHO05D004343 0.0e+00 1188.3 955 63.5
Solyc07g041510.3 Solanum lycopersicum HOM05D003881 ORTHO05D004343 0.0e+00 1140.6 692 82.4
Sopen07g027960 Solanum pennellii HOM05D003674 ORTHO05D004343 0.0e+00 1140.2 690 82.5
AagrBONN_evm.TU.Sc2ySwM_344.1648 Anthoceros agrestis HOM05D003881 ORTHO05D004343 0.0e+00 1112.1 1058 57.3
unitig_8.g3529 Utricularia gibba HOM05D003881 ORTHO05D004343 0.0e+00 1101.3 1095 58.3
Peaxi162Scf00127g00019 Petunia axillaris HOM05D003881 ORTHO05D004343 1.1e-284 983.8 690 73.8
TAR383G0903 Trochodendron aralioides HOM05D003881 ORTHO05D004343 5.0e-274 948.3 546 85.0
Pp3c3_17140 Physcomitrium patens HOM05D003881 ORTHO05D004343 1.9e-273 946.4 747 62.0
Cpa.g.sc28.63 Carica papaya HOM05D003881 ORTHO05D004343 3.3e-265 919.1 1088 51.5
CARHR103800 Cardamine hirsuta HOM05D003881 ORTHO05D004343 1.7e-253 880.2 635 71.5
HPP92_007226 Vanilla planifolia HOM05D003881 ORTHO05D004343 4.3e-193 679.5 570 61.6
TAR383G0300 Trochodendron aralioides HOM05D003881 ORTHO05D004343 1.8e-186 657.5 522 71.5
Os07g0476200 Oryza sativa ssp. japonica HOM05D003881 ORTHO05D004343 3.6e-163 580.1 448 66.3
CARHR103810 Cardamine hirsuta HOM05D003881 ORTHO05D004343 3.4e-153 547.0 318 84.3
Sopen07g021070 Solanum pennellii HOM05D003881 ORTHO05D004343 2.6e-137 494.2 411 72.3
Peaxi162Scf00127g00018 Petunia axillaris HOM05D003881 ORTHO05D004343 4.4e-129 466.8 422 68.2
SEGI_36108 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 3.2e-127 460.7 472 56.1
CBR_g74629 Chara braunii HOM05D003881 ORTHO05D004343 5.6e-124 449.9 368 59.5
QL01p053501 Quercus lobata HOM05D003881 ORTHO05D004343 1.2e-94 352.4 287 62.4
QL04p095684 Quercus lobata HOM05D003881 ORTHO05D004343 5.7e-92 343.6 230 72.6
SHI23794 Sapria himalayana HOM05D003881 ORTHO05D004343 6.3e-91 340.1 324 57.4
QL03p010974 Quercus lobata HOM05D003881 ORTHO05D004343 5.3e-90 337.0 278 62.2
MCO14G023 Micromonas commoda HOM05D003881 ORTHO05D004343 6.1e-86 323.6 1141 27.3
Cre03.g189605 Chlamydomonas reinhardtii HOM05D003881 ORTHO05D004343 3.4e-81 307.8 1079 27.2
Psat4g185720 Pisum sativum HOM05D003881 ORTHO05D004343 5.0e-80 303.9 197 78.2
Zm00001eb329800 Zea mays HOM05D003881 ORTHO05D004343 1.1e-63 249.6 190 65.8
QL10p021459 Quercus lobata HOM05D000176 ORTHO05D000106 2.1e-62 245.4 134 85.8
ATR0684G009 Amborella trichopoda HOM05D003881 ORTHO05D004343 2.2e-59 235.3 387 38.0
SEGI_33062 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 1.6e-54 219.2 144 72.9
CSS0024068 Camellia sinensis var. sinensis HOM05D003881 ORTHO05D004343 1.2e-49 203.0 99 98.0
vmacro22673 Vaccinium macrocarpon HOM05D003881 ORTHO05D004343 1.1e-47 196.4 301 52.2
Thhalv10002929m.g Eutrema salsugineum HOM05D003881 ORTHO05D004343 1.2e-46 193.0 217 50.2
ATR0193G031 Amborella trichopoda HOM05D003881 ORTHO05D004343 1.8e-42 179.1 108 78.7
ATR0193G014 Amborella trichopoda HOM05D003881 ORTHO05D004343 2.4e-42 178.7 107 83.2
MD15G1215900 Malus domestica HOM05D003881 ORTHO05D004343 4.1e-42 177.9 267 44.6
Actinidia38472 Actinidia chinensis HOM05D003881 ORTHO05D004343 5.9e-41 174.1 237 45.1
CBR_g74627 Chara braunii HOM05D003881 ORTHO05D004343 2.9e-40 171.8 225 43.1
Lsat_1_v5_gn_3_15640 Lactuca sativa HOM05D003881 ORTHO05D004343 3.8e-40 171.4 103 76.7
HPP92_012481 Vanilla planifolia HOM05D003881 ORTHO05D004343 1.5e-39 169.5 149 61.1
HPP92_026934 Vanilla planifolia HOM05D003881 ORTHO05D004343 3.3e-39 168.3 494 29.6
Psat1g224080 Pisum sativum HOM05D003881 ORTHO05D004343 9.8e-36 156.8 88 85.2
SEGI_35060 Sequoiadendron giganteum HOM05D000021 ORTHO05D000010 8.3e-35 153.7 121 62.8
SEGI_29160 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 3.2e-34 151.8 119 62.2
Psat0s7528g0040 Pisum sativum HOM05D003881 ORTHO05D004343 1.2e-30 139.8 209 43.1
Psat1g059560 Pisum sativum HOM05D003881 ORTHO05D004343 8.0e-30 137.1 209 42.6
ATR0684G059 Amborella trichopoda HOM05D003881 ORTHO05D004343 4.0e-29 134.8 93 74.2
Hma1.2p1_0528F.1_g173040 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 4.0e-29 134.8 108 65.7
Hma1.2p1_0980F.1_g243635 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 4.0e-29 134.8 108 65.7
Hma1.2p1_1385F.1_g279633 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 4.0e-29 134.8 108 65.7
Hma1.2p1_0508F.1_g168780 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 1.6e-25 122.9 79 73.4
HPP92_006853 Vanilla planifolia HOM05D003881 ORTHO05D004343 1.6e-25 122.9 81 76.5
Psat1g034120 Pisum sativum HOM05D003881 ORTHO05D004343 2.0e-25 122.5 145 49.7
Hma1.2p1_0430F.1_g151320 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 1.9e-23 115.9 61 88.5
HPP92_006870 Vanilla planifolia HOM05D003881 ORTHO05D004343 9.5e-23 113.6 229 41.0
Rhsim03G0229000 Rhododendron simsii HOM05D003881 ORTHO05D004343 3.1e-21 108.6 97 68.0
HPP92_028483 Vanilla planifolia HOM05D003881 ORTHO05D004343 8.3e-19 100.5 61 70.5
SEGI_23032 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 1.9e-18 99.4 97 55.7
SEGI_26438 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 2.1e-17 95.9 59 78.0
SEGI_11752 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 4.6e-17 94.7 141 43.3
HPP92_012555 Vanilla planifolia HOM05D003881 ORTHO05D004343 1.0e-16 93.6 190 44.2
SEGI_15507 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 3.0e-16 92.0 79 57.0
SEGI_39855 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 8.6e-16 90.5 71 64.8
TPR.G10985 Trifolium pratense HOM05D003881 ORTHO05D004343 1.1e-15 90.1 47 97.9
RcHm_v2.0_Chr5g0007121 Rosa chinensis HOM05D003881 ORTHO05D004343 3.6e-14 85.1 51 76.5
Actinidia38474 Actinidia chinensis HOM05D003881 ORTHO05D004343 8.1e-14 84.0 53 84.9
PGSC0003DMG400019565 Solanum tuberosum HOM05D003881 ORTHO05D004343 4.0e-13 81.6 97 56.7
ATR0193G048 Amborella trichopoda HOM05D003881 ORTHO05D004343 2.6e-12 79.0 108 44.4
Psat6g098400 Pisum sativum HOM05D003881 ORTHO05D004343 4.1e-10 71.6 63 58.7
CBR_g74625 Chara braunii HOM05D003881 ORTHO05D004343 6.0e-09 67.8 66 51.5
BolC7t41346H Brassica oleracea HOM05D003881 ORTHO05D004343 7.8e-09 67.4 77 46.8
AUR62025190 Chenopodium quinoa HOM05D003881 ORTHO05D004343 1.0e-08 67.0 114 47.4
PRCOL_00001933 Prasinoderma coloniale HOM05D026299 ORTHO05D028720 1.7e-08 66.2 156 27.6
C07p09280 Brassica napus HOM05D003881 ORTHO05D004343 1.9e-07 62.8 77 44.2
CBR_g36749 Chara braunii HOM05D003469 ORTHO05D004084 1.2e-06 60.1 229 21.8
SEGI_25641 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 1.2e-06 60.1 38 73.7
BcaNung03874 Brassica carinata HOM05D001509 ORTHO05D001361 1.6e-06 59.7 161 28.6
SEGI_17061 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 2.8e-06 58.9 45 60.0
MCO11G359 Micromonas commoda HOM05D026299 ORTHO05D028720 3.6e-06 58.5 216 20.8


User provided reference genes

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