Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040058 Camellia sinensis var. sinensis HOM05D006616 ORTHO05D008435 4.7e-253 877.5 474 100.0
CSS0027023 Camellia sinensis var. sinensis HOM05D006616 ORTHO05D008435 2.2e-210 735.7 456 91.9
Actinidia03423 Actinidia chinensis HOM05D006616 ORTHO05D008435 4.2e-169 598.6 673 56.3
Rhsim11G0071400 Rhododendron simsii HOM05D006616 ORTHO05D008435 2.4e-164 582.8 645 58.3
Dinv27270 Davidia involucrata HOM05D006616 ORTHO05D008435 1.4e-156 557.0 704 53.0
Hma1.2p1_2178F.1_g316210 Hydrangea macrophylla HOM05D006616 ORTHO05D008435 1.1e-145 520.8 466 66.5
Prupe.7G020500 Prunus persica HOM05D006616 ORTHO05D008435 1.6e-128 463.8 571 54.8
Atru.chr1.1509 Acer truncatum HOM05D006616 ORTHO05D008435 2.8e-128 463.0 464 62.3
TAR622G0026 Trochodendron aralioides HOM05D006616 ORTHO05D008435 6.2e-128 461.8 463 61.8
CiPaw.10G044000 Carya illinoinensis HOM05D006616 ORTHO05D008435 8.0e-128 461.5 581 54.9
Peaxi162Scf00066g00130 Petunia axillaris HOM05D006616 ORTHO05D008435 1.5e-126 457.2 540 55.7
GSVIVG01025818001 Vitis vinifera HOM05D006616 ORTHO05D008435 5.8e-126 455.3 468 61.8
CAN.G526.15 Capsicum annuum HOM05D006616 ORTHO05D008435 6.4e-125 451.8 558 53.2
HanXRQChr05g0149371 Helianthus annuus HOM05D006616 ORTHO05D008435 2.0e-123 446.8 555 53.3
Cfa019948 Carpinus fangiana HOM05D006616 ORTHO05D008435 4.6e-123 445.7 472 60.0
MD00G1150000 Malus domestica HOM05D006616 ORTHO05D008435 1.3e-122 444.1 525 55.0
TWI74G0800 Tripterygium wilfordii HOM05D006616 ORTHO05D008435 3.0e-122 443.0 454 60.4
Manes.09G002500 Manihot esculenta HOM05D006616 ORTHO05D008435 1.9e-121 440.3 437 64.1
Eucgr.A02183 Eucalyptus grandis HOM05D006616 ORTHO05D008435 4.3e-121 439.1 446 60.5
ECA246G4188 Erigeron canadensis HOM05D006616 ORTHO05D008435 1.2e-120 437.6 542 53.7
Lj5g0015037 Lotus japonicus HOM05D006616 ORTHO05D008435 2.1e-120 436.8 547 54.3
MBI16_g32949_MAGBIO Magnolia biondii HOM05D006616 ORTHO05D008435 2.3e-119 433.3 480 58.3
Cc10_g12770 Coffea canephora HOM05D006616 ORTHO05D008435 3.1e-119 433.0 469 59.1
PGR042G1816 Punica granatum HOM05D006616 ORTHO05D008435 4.0e-119 432.6 442 62.7
QL07p014063 Quercus lobata HOM05D006616 ORTHO05D008435 5.2e-119 432.2 487 57.3
CANSAT78G0100 Cannabis sativa HOM05D006616 ORTHO05D008435 8.9e-119 431.4 500 56.8
RcHm_v2.0_Chr3g0494671 Rosa chinensis HOM05D006616 ORTHO05D008435 3.4e-118 429.5 468 59.4
Ca_02795_v3 Cicer arietinum L. HOM05D006616 ORTHO05D008435 4.4e-118 429.1 527 56.5
MSTRG.24176 Avicennia marina HOM05D006616 ORTHO05D008435 5.8e-118 428.7 557 52.4
Potri.006G032200 Populus trichocarpa HOM05D006616 ORTHO05D008435 9.9e-118 427.9 457 59.5
SGA_v2.0_scaffold25G11136 Striga asiatica HOM05D006616 ORTHO05D008435 3.7e-117 426.0 512 55.3
Ah.13g077310 Amaranthus hybridus HOM05D006616 ORTHO05D008435 4.9e-117 425.6 458 57.4
Oeu038315.2 Olea europaea HOM05D006616 ORTHO05D008435 4.9e-117 425.6 542 53.7
Hund19065 Selenicereus undatus HOM05D006616 ORTHO05D008435 1.1e-116 424.5 456 60.1
Solyc11g005110.3 Solanum lycopersicum HOM05D006616 ORTHO05D008435 1.9e-116 423.7 527 54.1
Sopen11g001110 Solanum pennellii HOM05D006616 ORTHO05D008435 7.1e-116 421.8 530 53.6
Nn3g18184 Nelumbo nucifera HOM05D006616 ORTHO05D008435 9.2e-116 421.4 459 59.5
Gorai.007G351400 Gossypium raimondii HOM05D006616 ORTHO05D008435 1.2e-115 421.0 443 60.3
Gohir.D11G321200 Gossypium hirsutum HOM05D006616 ORTHO05D008435 2.1e-115 420.2 436 61.0
VMungo0720G0485 Vigna mungo HOM05D006616 ORTHO05D008435 4.6e-115 419.1 528 53.4
Aqoxy3G00148 Aquilegia oxysepala HOM05D006616 ORTHO05D008435 1.7e-114 417.2 474 58.2
arahy.Tifrunner.gnm1.ann1.QA0LD5 Arachis hypogaea HOM05D006616 ORTHO05D008435 1.7e-114 417.2 460 59.8
arahy.Tifrunner.gnm1.ann1.958W0C Arachis hypogaea HOM05D006616 ORTHO05D008435 3.9e-114 416.0 460 59.6
Phvul.007G243700 Phaseolus vulgaris HOM05D006616 ORTHO05D008435 3.9e-114 416.0 533 53.3
Lj7A350T24 Lonicera japonica HOM05D006616 ORTHO05D008435 6.6e-114 415.2 521 48.8
Migut.N03264 Erythranthe guttata HOM05D006616 ORTHO05D008435 1.1e-113 414.5 538 53.5
Sabra06G0021500 Salix brachista HOM05D006616 ORTHO05D008435 1.1e-113 414.5 430 60.7
Duzib128G1745 Durio zibethinus HOM05D006616 ORTHO05D008435 1.5e-113 414.1 453 58.3
Gohir.A11G305800 Gossypium hirsutum HOM05D006616 ORTHO05D008435 1.9e-113 413.7 443 59.8
Thecc.05G123900 Theobroma cacao HOM05D006616 ORTHO05D008435 4.3e-113 412.5 461 57.3
SalBow2G2978 Salvia bowleyana HOM05D006616 ORTHO05D008435 7.3e-113 411.8 536 47.6
AUR62018417 Chenopodium quinoa HOM05D006616 ORTHO05D008435 1.2e-112 411.0 471 57.5
AUR62021025 Chenopodium quinoa HOM05D006616 ORTHO05D008435 2.1e-112 410.2 467 57.6
Lalb_Chr21g0316821 Lupinus albus HOM05D006616 ORTHO05D008435 2.1e-112 410.2 450 59.8
TPR.G13802 Trifolium pratense HOM05D006616 ORTHO05D008435 3.6e-112 409.5 513 54.8
PSO478G1375 Papaver somniferum HOM05D006616 ORTHO05D008435 8.9e-111 404.8 503 54.5
ATR0326G030 Amborella trichopoda HOM05D006616 ORTHO05D008435 2.0e-110 403.7 468 57.9
Glyma.02G162000 Glycine max HOM05D006616 ORTHO05D008435 3.4e-110 402.9 540 53.3
FAN28G1824 Fragaria x ananassa HOM05D006616 ORTHO05D008435 1.9e-108 397.1 454 58.8
Ciclev10011646m.g Citrus clementina HOM05D006616 ORTHO05D008435 5.4e-108 395.6 457 57.8
FAN26G1972 Fragaria x ananassa HOM05D006616 ORTHO05D008435 2.7e-107 393.3 459 58.2
CDE04G3611 Ceratophyllum demersum HOM05D006616 ORTHO05D008435 4.6e-107 392.5 461 57.0
Psat6g087360 Pisum sativum HOM05D006616 ORTHO05D008435 1.0e-106 391.3 455 56.7
CsaV3_3G040470 Cucumis sativus L. HOM05D006616 ORTHO05D008435 1.7e-106 390.6 504 52.6
Os01g0916300 Oryza sativa ssp. japonica HOM05D006616 ORTHO05D008435 3.9e-106 389.4 514 52.9
Aa31LG3G1010 Aethionema arabicum HOM05D006616 ORTHO05D008435 1.1e-105 387.9 445 56.9
AL4G39000 Arabidopsis lyrata HOM05D006616 ORTHO05D008435 2.5e-105 386.7 445 58.0
Medtr1g051155 Medicago truncatula HOM05D006616 ORTHO05D008435 5.6e-105 385.6 445 57.5
EL10Ac3g07308 Beta vulgaris HOM05D006616 ORTHO05D008435 2.8e-104 383.3 452 57.3
Sp4g23340 Schrenkiella parvula HOM05D006616 ORTHO05D008435 6.2e-104 382.1 443 56.9
Thhalv10002504m.g Eutrema salsugineum HOM05D006616 ORTHO05D008435 1.4e-103 380.9 480 53.8
FAN19G2668 Fragaria x ananassa HOM05D006616 ORTHO05D008435 3.1e-103 379.8 452 56.2
Zm00001eb364810 Zea mays HOM05D006616 ORTHO05D008435 3.1e-103 379.8 510 51.8
Sed0024074 Sechium edule HOM05D006616 ORTHO05D008435 4.0e-103 379.4 506 50.6
BcaC02g12875 Brassica carinata HOM05D006616 ORTHO05D008435 6.9e-103 378.6 437 57.4
C04p68740 Brassica napus HOM05D006616 ORTHO05D008435 2.0e-102 377.1 438 58.0
AT2G41020 Arabidopsis thaliana HOM05D006616 ORTHO05D008435 3.4e-102 376.3 445 56.6
BraA04t18591Z Brassica rapa HOM05D006616 ORTHO05D002641 4.2e-100 369.4 434 57.8
THA.LOC104815412 Tarenaya hassleriana HOM05D006616 ORTHO05D008435 4.2e-100 369.4 449 55.7
A04p31340 Brassica napus HOM05D006616 ORTHO05D002641 1.2e-99 367.9 431 57.5
DCAR_014373 Daucus carota HOM05D006616 ORTHO05D008435 2.7e-99 366.7 448 56.2
BolC4t28379H Brassica oleracea HOM05D006616 ORTHO05D008435 5.1e-98 362.5 431 57.1
Nitab4.5_0001168g0150 Nicotiana tabacum HOM05D006616 ORTHO05D008435 5.1e-98 362.5 558 42.5
HPP92_023122 Vanilla planifolia HOM05D006616 ORTHO05D008435 2.1e-96 357.1 442 55.0
Lsat_1_v5_gn_6_110180 Lactuca sativa HOM05D006616 ORTHO05D008435 1.1e-95 354.8 555 47.6
Carub.0004s2335 Capsella rubella HOM05D006616 ORTHO05D008435 2.4e-95 353.6 444 56.1
unitig_52.g17546 Utricularia gibba HOM05D006616 ORTHO05D008435 9.0e-95 351.7 490 50.8
CARHR136140 Cardamine hirsuta HOM05D006616 ORTHO05D008435 2.2e-93 347.1 405 57.3
PSO017G2359 Papaver somniferum HOM05D006616 ORTHO05D008435 6.0e-91 339.0 386 58.0
FvH4_1g29230 Fragaria vesca HOM05D006616 ORTHO05D008435 5.3e-87 325.9 438 53.2
Haze_20291 Corylus avellana HOM05D006616 ORTHO05D008435 1.9e-81 307.4 751 37.3
ClCG10G015990 Citrullus lanatus HOM05D006616 ORTHO05D008435 3.1e-79 300.1 471 48.4
Pp3c10_1890 Physcomitrium patens HOM05D006616 ORTHO05D008435 8.7e-74 282.0 567 42.7
Pp3c10_1896 Physcomitrium patens HOM05D006616 ORTHO05D008435 8.7e-74 282.0 567 42.7
Mapoly0043s0041 Marchantia polymorpha HOM05D006616 ORTHO05D008435 1.1e-73 281.6 548 41.6
MELO3C009780.2 Cucumis melo HOM05D006616 ORTHO05D008435 2.4e-71 273.9 542 42.1
Nitab4.5_0003863g0020 Nicotiana tabacum HOM05D006616 ORTHO05D008435 7.4e-57 225.7 253 51.0
Hma1.2p1_2178F.1_g316200 Hydrangea macrophylla HOM05D006616 ORTHO05D008435 9.1e-55 218.8 261 48.7
Actinidia25416 Actinidia chinensis HOM05D006616 ORTHO05D008435 3.8e-53 213.4 208 55.3
AagrBONN_evm.TU.Sc2ySwM_228.200 Anthoceros agrestis HOM05D006616 ORTHO05D008435 1.4e-47 194.9 284 40.8
Cpa.g.sc33.190 Carica papaya HOM05D006616 ORTHO05D008435 2.1e-43 181.0 197 53.3
Sc13g0000840 Simmondsia chinensis HOM05D006616 ORTHO05D008435 1.0e-42 178.7 250 44.8
Nitab4.5_0003863g0030 Nicotiana tabacum HOM05D006616 ORTHO05D008435 1.5e-41 174.9 319 38.6
SEGI_15760 Sequoiadendron giganteum HOM05D006616 ORTHO05D008435 2.6e-41 174.1 139 69.8
vmacro00863 Vaccinium macrocarpon HOM05D006616 ORTHO05D008435 5.7e-41 172.9 266 42.5
SEGI_28853 Sequoiadendron giganteum HOM05D006616 ORTHO05D008435 7.0e-39 166.0 355 43.1
SMO339G0010 Selaginella moellendorffii HOM05D006616 ORTHO05D008435 4.0e-34 150.2 98 78.6
vmacro00862 Vaccinium macrocarpon HOM05D006616 ORTHO05D008435 6.8e-34 149.4 110 73.6
Actinidia29490 Actinidia chinensis HOM05D006616 ORTHO05D008435 2.6e-33 147.5 293 35.2
FAN23G2418 Fragaria x ananassa HOM05D006616 ORTHO05D008435 3.7e-32 143.7 82 91.5
Psat1g016240 Pisum sativum HOM05D006616 ORTHO05D008435 1.7e-24 118.2 158 47.5
COL.COLO4_33517 Corchorus olitorius HOM05D006616 ORTHO05D008435 4.9e-24 116.7 91 62.6
Psat7g065560 Pisum sativum HOM05D006616 ORTHO05D008435 6.3e-24 116.3 100 59.0
Migut.C01363 Erythranthe guttata HOM05D006616 ORTHO05D008435 7.0e-23 112.8 166 46.4
SHI24850 Sapria himalayana HOM05D006616 ORTHO05D008435 4.5e-22 110.2 153 44.4
CBR_g8767 Chara braunii HOM05D006616 ORTHO05D008435 1.7e-21 108.2 400 34.0
PSO478G1191 Papaver somniferum HOM05D006616 ORTHO05D008435 6.4e-16 89.7 158 47.5
MBI16_g47221_MAGBIO Magnolia biondii HOM05D006616 ORTHO05D008435 9.2e-15 85.9 164 42.1
Cre12.g527600 Chlamydomonas reinhardtii HOM05D006616 ORTHO05D008435 1.7e-13 81.6 268 40.7
BcaC02g07966 Brassica carinata HOM05D001681 ORTHO05D001589 4.3e-12 77.0 50 78.0
MCO09G511 Micromonas commoda HOM05D006616 ORTHO05D008435 4.3e-12 77.0 322 30.4


User provided reference genes

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