Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0039953 Camellia sinensis var. sinensis HOM05D004762 ORTHO05D005972 8.4e-271 936.4 465 100.0
CSS0044129 Camellia sinensis var. sinensis HOM05D004762 ORTHO05D005972 8.4e-271 936.4 465 100.0
Rhsim03G0145100 Rhododendron simsii HOM05D004762 ORTHO05D005972 1.3e-234 816.2 465 85.2
vmacro06958 Vaccinium macrocarpon HOM05D004762 ORTHO05D005972 2.1e-229 798.9 497 80.9
TAR636G3670 Trochodendron aralioides HOM05D004762 ORTHO05D005972 6.9e-225 783.9 465 82.4
Hma1.2p1_0145F.1_g065350 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 3.8e-223 778.1 462 81.8
Ciclev10031450m.g Citrus clementina HOM05D004762 ORTHO05D005972 2.6e-219 765.4 460 80.7
QL06p052059 Quercus lobata HOM05D004762 ORTHO05D005972 2.2e-218 762.3 460 81.5
CiPaw.01G300200 Carya illinoinensis HOM05D004762 ORTHO05D005972 2.6e-216 755.4 460 80.7
Potri.012G095500 Populus trichocarpa HOM05D004762 ORTHO05D005972 5.0e-215 751.1 460 79.1
GSVIVG01032791001 Vitis vinifera HOM05D004762 ORTHO05D005972 5.0e-215 751.1 463 79.0
Sed0015827 Sechium edule HOM05D004762 ORTHO05D005972 1.6e-213 746.1 465 78.7
Atru.BG.273.p Acer truncatum HOM05D004762 ORTHO05D005972 2.7e-213 745.3 424 84.0
Manes.07G131500 Manihot esculenta HOM05D004762 ORTHO05D005972 3.6e-213 745.0 460 79.6
CsaV3_5G010300 Cucumis sativus L. HOM05D004762 ORTHO05D005972 2.3e-212 742.3 465 79.1
Cfa001301 Carpinus fangiana HOM05D004762 ORTHO05D005972 3.9e-212 741.5 460 80.4
Duzib106G1587 Durio zibethinus HOM05D004762 ORTHO05D005972 3.3e-211 738.4 463 78.2
Eucgr.G03076 Eucalyptus grandis HOM05D004762 ORTHO05D005972 5.7e-211 737.6 465 76.1
Thecc.10G014000 Theobroma cacao HOM05D004762 ORTHO05D005972 9.7e-211 736.9 458 79.0
Haze_17244 Corylus avellana HOM05D004762 ORTHO05D005972 2.2e-210 735.7 463 79.5
CANSAT56G2662 Cannabis sativa HOM05D004762 ORTHO05D005972 3.7e-210 734.9 460 78.0
FvH4_7g24680 Fragaria vesca HOM05D004762 ORTHO05D005972 6.3e-210 734.2 462 77.5
PSO675G7276 Papaver somniferum HOM05D004762 ORTHO05D005972 1.1e-209 733.4 456 77.2
MD07G1223900 Malus domestica HOM05D004762 ORTHO05D005972 3.1e-209 731.9 460 78.3
TWI09G1175 Tripterygium wilfordii HOM05D004762 ORTHO05D005972 9.1e-209 730.3 457 79.0
ClCG07G004360 Citrullus lanatus HOM05D004762 ORTHO05D005972 2.0e-208 729.2 498 73.3
COL.COLO4_25767 Corchorus olitorius HOM05D004762 ORTHO05D005972 2.6e-208 728.8 454 78.2
FAN10G2322 Fragaria x ananassa HOM05D004762 ORTHO05D005972 1.3e-207 726.5 462 76.8
Gorai.013G017200 Gossypium raimondii HOM05D004762 ORTHO05D005972 1.3e-207 726.5 463 76.9
arahy.Tifrunner.gnm1.ann1.BGVI4S Arachis hypogaea HOM05D004762 ORTHO05D005972 1.7e-207 726.1 461 76.8
RcHm_v2.0_Chr1g0370541 Rosa chinensis HOM05D004762 ORTHO05D005972 2.9e-207 725.3 463 77.3
MD01G1154800 Malus domestica HOM05D004762 ORTHO05D005972 5.0e-207 724.5 465 76.3
COL.COLO4_23625 Corchorus olitorius HOM05D004762 ORTHO05D005972 8.5e-207 723.8 458 76.6
Lj8A64T49 Lonicera japonica HOM05D004762 ORTHO05D005972 1.1e-206 723.4 454 79.3
HanXRQChr14g0459541 Helianthus annuus HOM05D004762 ORTHO05D005972 1.5e-206 723.0 462 75.3
Prupe.2G252400 Prunus persica HOM05D004762 ORTHO05D005972 1.5e-206 723.0 462 77.1
PSO017G1441 Papaver somniferum HOM05D004762 ORTHO05D005972 2.5e-206 722.2 463 74.5
PSO478G3676 Papaver somniferum HOM05D004762 ORTHO05D005972 2.5e-206 722.2 463 74.9
TWI53G2041 Tripterygium wilfordii HOM05D004762 ORTHO05D005972 3.2e-206 721.8 465 76.6
Hma1.2p1_0523F.1_g172170 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 4.2e-206 721.5 457 77.2
Cc08_g07190 Coffea canephora HOM05D004762 ORTHO05D005972 5.5e-206 721.1 469 75.7
Lj3g0010190 Lotus japonicus HOM05D004762 ORTHO05D005972 5.5e-206 721.1 459 76.5
Gohir.D13G015700 Gossypium hirsutum HOM05D004762 ORTHO05D005972 1.6e-205 719.5 463 76.7
FAN06G2944 Fragaria x ananassa HOM05D004762 ORTHO05D005972 2.7e-205 718.8 491 73.1
Nn1g09364 Nelumbo nucifera HOM05D004762 ORTHO05D005972 2.7e-205 718.8 439 78.6
Migut.F00664 Erythranthe guttata HOM05D004762 ORTHO05D005972 4.7e-205 718.0 456 76.8
EL10Ac2g04854 Beta vulgaris HOM05D004762 ORTHO05D005972 6.1e-205 717.6 456 75.9
Lalb_Chr04g0254441 Lupinus albus HOM05D004762 ORTHO05D005972 6.1e-205 717.6 453 75.7
Solyc10g076800.2 Solanum lycopersicum HOM05D004762 ORTHO05D005972 8.0e-205 717.2 464 73.5
Psat4g160680 Pisum sativum HOM05D004762 ORTHO05D005972 1.0e-204 716.8 460 76.1
PGSC0003DMG400019183 Solanum tuberosum HOM05D004762 ORTHO05D005972 1.0e-204 716.8 464 73.5
Peaxi162Scf00284g00722 Petunia axillaris HOM05D004762 ORTHO05D005972 1.4e-204 716.5 464 73.5
PSO017G5956 Papaver somniferum HOM05D004762 ORTHO05D005972 3.0e-204 715.3 481 72.3
CAN.G1087.1 Capsicum annuum HOM05D004762 ORTHO05D005972 5.2e-204 714.5 452 74.3
Medtr8g027750 Medicago truncatula HOM05D004762 ORTHO05D005972 6.8e-204 714.1 456 76.1
arahy.Tifrunner.gnm1.ann1.YY9F0M Arachis hypogaea HOM05D004762 ORTHO05D005972 8.8e-204 713.8 475 74.3
Phvul.010G113600 Phaseolus vulgaris HOM05D004762 ORTHO05D005972 8.8e-204 713.8 459 75.8
Aqoxy7G00585 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 1.2e-203 713.4 459 74.5
SalBow6G6782 Salvia bowleyana HOM05D004762 ORTHO05D005972 1.5e-203 713.0 462 75.3
AUR62012271 Chenopodium quinoa HOM05D004762 ORTHO05D005972 2.6e-203 712.2 458 74.7
Glyma.07G056300 Glycine max HOM05D004762 ORTHO05D005972 2.6e-203 712.2 459 75.8
Thhalv10016619m.g Eutrema salsugineum HOM05D004762 ORTHO05D005972 7.5e-203 710.7 455 75.4
ECA238G4598 Erigeron canadensis HOM05D001399 ORTHO05D001670 2.2e-202 709.1 429 79.3
Nitab4.5_0013304g0010 Nicotiana tabacum HOM05D004762 ORTHO05D005972 2.8e-202 708.8 452 74.8
arahy.Tifrunner.gnm1.ann1.NBD53L Arachis hypogaea HOM05D004762 ORTHO05D005972 6.3e-202 707.6 463 75.8
CAN.G1305.22 Capsicum annuum HOM05D004762 ORTHO05D005972 6.3e-202 707.6 464 72.4
Nitab4.5_0000797g0010 Nicotiana tabacum HOM05D004762 ORTHO05D005972 6.3e-202 707.6 452 74.8
VMungo0331G1989 Vigna mungo HOM05D004762 ORTHO05D005972 6.3e-202 707.6 459 75.2
Sp4g22540 Schrenkiella parvula HOM05D004762 ORTHO05D005972 8.3e-202 707.2 455 74.9
AT2G40190 Arabidopsis thaliana HOM05D004762 ORTHO05D005972 2.4e-201 705.7 455 75.2
Carub.0004s2241 Capsella rubella HOM05D004762 ORTHO05D005972 3.1e-201 705.3 456 74.6
Sc10g0002460 Simmondsia chinensis HOM05D004762 ORTHO05D005972 3.1e-201 705.3 455 73.8
Aa31LG5G19380 Aethionema arabicum HOM05D004762 ORTHO05D005972 7.0e-201 704.1 458 74.9
Glyma.16G025200 Glycine max HOM05D004762 ORTHO05D005972 1.6e-200 703.0 455 75.6
A05p06240 Brassica napus HOM05D004762 ORTHO05D005972 2.0e-200 702.6 455 75.2
FAN01G2296 Fragaria x ananassa HOM05D004762 ORTHO05D005972 2.0e-200 702.6 503 70.6
Ca_23540_v3 Cicer arietinum L. HOM05D004762 ORTHO05D005972 1.0e-199 700.3 475 73.3
AL108U10020 Arabidopsis lyrata HOM05D004762 ORTHO05D005972 3.8e-199 698.4 455 74.5
BraA05t19588Z Brassica rapa HOM05D004762 ORTHO05D005972 5.0e-199 698.0 455 74.7
PGR142G3177 Punica granatum HOM05D004762 ORTHO05D005972 5.0e-199 698.0 456 74.8
BcaB02g09041 Brassica carinata HOM05D004762 ORTHO05D005972 6.5e-199 697.6 444 75.5
Oeu043882.1 Olea europaea HOM05D004762 ORTHO05D005972 1.2e-197 693.3 500 68.8
Sabra15G0114600 Salix brachista HOM05D004762 ORTHO05D005972 1.6e-197 693.0 600 60.7
BcaC02g12138 Brassica carinata HOM05D004762 ORTHO05D005972 2.7e-197 692.2 448 74.3
C04p07190 Brassica napus HOM05D004762 ORTHO05D005972 6.1e-197 691.0 448 74.1
Gohir.A13G014500 Gossypium hirsutum HOM05D004762 ORTHO05D005972 6.1e-197 691.0 463 73.9
FAN03G0495 Fragaria x ananassa HOM05D004762 ORTHO05D005972 8.8e-196 687.2 476 72.5
Lsat_1_v5_gn_2_124101 Lactuca sativa HOM05D004762 ORTHO05D005972 8.8e-196 687.2 448 74.6
BolC4t22343H Brassica oleracea HOM05D004762 ORTHO05D005972 1.5e-195 686.4 449 73.9
Oeu011273.2 Olea europaea HOM05D004762 ORTHO05D005972 4.4e-195 684.9 535 65.0
AL4G37920 Arabidopsis lyrata HOM05D004762 ORTHO05D005972 4.5e-192 674.9 455 73.0
ATR0580G181 Amborella trichopoda HOM05D004762 ORTHO05D005972 1.2e-189 666.8 460 70.4
CDE02G4330 Ceratophyllum demersum HOM05D004762 ORTHO05D005972 1.0e-188 663.7 455 71.0
Zm00001eb030250 Zea mays HOM05D004762 ORTHO05D005972 4.1e-185 651.7 456 68.6
DCAR_007786 Daucus carota HOM05D004762 ORTHO05D005972 7.0e-185 651.0 441 71.9
HPP92_020134 Vanilla planifolia HOM05D004762 ORTHO05D005972 2.9e-183 645.6 424 73.1
Hma1.2p1_2705F.1_g327160 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 1.3e-178 630.2 362 84.8
MELO3C018365.2 Cucumis melo HOM05D004762 ORTHO05D005972 1.2e-176 623.6 383 78.9
Actinidia33916 Actinidia chinensis HOM05D004762 ORTHO05D005972 1.8e-172 609.8 398 76.9
AUR62022908 Chenopodium quinoa HOM05D004762 ORTHO05D005972 5.8e-171 604.7 379 76.5
DCAR_024818 Daucus carota HOM05D004762 ORTHO05D005972 8.3e-170 600.9 459 63.6
TPR.G15355 Trifolium pratense HOM05D004762 ORTHO05D005972 7.3e-166 587.8 364 78.3
SGA_v2.0_scaffold44G16679 Striga asiatica HOM05D004762 ORTHO05D005972 9.5e-166 587.4 370 76.2
AagrBONN_evm.TU.Sc2ySwM_228.3247 Anthoceros agrestis HOM05D004762 ORTHO05D005972 9.3e-153 544.3 442 60.9
unitig_748.g8448 Utricularia gibba HOM05D004762 ORTHO05D005972 1.7e-151 540.0 436 60.8
SGA_v2.0_scaffold60G20982 Striga asiatica HOM05D004762 ORTHO05D005972 2.3e-151 539.7 467 59.7
Mapoly0096s0017 Marchantia polymorpha HOM05D004762 ORTHO05D005972 1.1e-150 537.3 453 60.7
Pp3c14_26870 Physcomitrium patens HOM05D004762 ORTHO05D005972 1.5e-147 526.9 437 59.3
SMO358G0322 Selaginella moellendorffii HOM05D004762 ORTHO05D005972 1.5e-142 510.4 444 59.0
CBR_g12682 Chara braunii HOM05D004762 ORTHO05D005972 3.1e-140 502.7 445 57.8
Dinv21748 Davidia involucrata HOM05D004762 ORTHO05D005972 1.5e-139 500.4 276 84.8
BcaC02g12136 Brassica carinata HOM05D004762 ORTHO05D005972 3.0e-135 486.1 431 61.0
Hund15913 Selenicereus undatus HOM05D004762 ORTHO05D005972 1.9e-129 466.8 461 53.8
Sopen10g028440 Solanum pennellii HOM05D004762 ORTHO05D005972 1.3e-122 444.1 280 72.9
CARHR135230 Cardamine hirsuta HOM05D004762 ORTHO05D005972 1.3e-119 434.1 288 71.2
PSO017G2836 Papaver somniferum HOM05D004762 ORTHO05D005972 4.3e-110 402.5 254 72.8
MCO10G125 Micromonas commoda HOM05D004762 ORTHO05D005972 1.0e-106 391.3 535 43.4
Os12g0583000 Oryza sativa ssp. japonica HOM05D004762 ORTHO05D005972 1.7e-101 374.0 254 71.7
Gohir.D06G056233 Gossypium hirsutum HOM05D004762 ORTHO05D005972 1.4e-100 370.9 253 74.3
PRCOL_00001728 Prasinoderma coloniale HOM05D004762 ORTHO05D005972 2.9e-98 363.2 419 48.0
Cre01.g058521 Chlamydomonas reinhardtii HOM05D004762 ORTHO05D005972 6.5e-98 362.1 507 42.6
Haze_26859 Corylus avellana HOM05D004762 ORTHO05D005972 6.1e-88 328.9 457 40.7
Gorai.004G138800 Gossypium raimondii HOM05D004762 ORTHO05D005972 6.8e-87 325.5 253 67.6
Gohir.D08G135600 Gossypium hirsutum HOM05D004762 ORTHO05D005972 1.2e-86 324.7 247 68.4
BraA04t18511Z Brassica rapa HOM05D004762 ORTHO05D001193 1.0e-74 285.0 238 62.6
BcaB01g03555 Brassica carinata HOM05D004762 ORTHO05D005972 8.3e-69 265.4 195 71.3
Potri.015G093000 Populus trichocarpa HOM05D004762 ORTHO05D005972 2.0e-67 260.8 184 72.3
Cpa.g.sc1441.3 Carica papaya HOM05D004762 ORTHO05D005972 3.9e-66 256.5 158 74.1
Aqoxy4G02491 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 2.3e-63 247.3 184 68.5
Aqoxy4G02490 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 1.2e-62 245.0 162 74.1
TAR633G0702 Trochodendron aralioides HOM05D003030 ORTHO05D003610 8.3e-61 238.8 152 80.3
A04p29970 Brassica napus HOM05D004762 ORTHO05D001193 1.7e-58 231.1 238 54.6
Phvul.010G113266 Phaseolus vulgaris HOM05D004762 ORTHO05D005972 5.1e-42 176.4 119 69.7
Nitab4.5_0006049g0030 Nicotiana tabacum HOM05D004762 ORTHO05D005972 1.5e-41 174.9 118 72.9
SEGI_20752 Sequoiadendron giganteum HOM05D004762 ORTHO05D005972 4.3e-41 173.3 116 72.4
QL11p009420 Quercus lobata HOM05D004762 ORTHO05D005972 9.6e-41 172.2 103 85.4
Aqoxy4G02489 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 1.4e-39 168.3 108 77.8
EL10Ac2g03328 Beta vulgaris HOM05D004762 ORTHO05D005972 2.0e-38 164.5 107 77.6
BcaB06g29139 Brassica carinata HOM05D004762 ORTHO05D005972 2.0e-38 164.5 118 70.3
Hma1.2p1_0812F.1_g222370 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 3.4e-38 163.7 344 34.3
EL10Ac6g13956 Beta vulgaris HOM05D004762 ORTHO05D005972 1.3e-32 145.2 91 78.0
TPR.G10834 Trifolium pratense HOM05D004762 ORTHO05D005972 9.0e-31 139.0 91 71.4
Nitab4.5_0001180g0090 Nicotiana tabacum HOM05D004762 ORTHO05D005972 2.4e-28 131.0 89 67.4
EL10Ac6g14685 Beta vulgaris HOM05D004762 ORTHO05D005972 6.9e-23 112.8 103 59.2
BcaC01g05421 Brassica carinata HOM05D002909 ORTHO05D000493 4.5e-22 110.2 71 80.3
C03p26800 Brassica napus HOM05D000223 ORTHO05D001193 4.5e-22 110.2 71 80.3
BolC3t15065H Brassica oleracea HOM05D000223 ORTHO05D001193 4.5e-22 110.2 71 80.3
SEGI_02041 Sequoiadendron giganteum HOM05D004762 ORTHO05D005972 3.9e-18 97.1 97 50.5
arahy.Tifrunner.gnm1.ann1.38D1EG Arachis hypogaea HOM05D005637 ORTHO05D006983 1.9e-17 94.7 66 68.2
arahy.Tifrunner.gnm1.ann1.SGI312 Arachis hypogaea HOM05D004762 ORTHO05D005972 5.6e-17 93.2 68 67.6
SMO200G0224 Selaginella moellendorffii HOM05D004141 ORTHO05D005416 4.0e-15 87.0 305 28.2
EL10Ac3g06411 Beta vulgaris HOM05D004762 ORTHO05D005972 4.5e-14 83.6 44 88.6
Nitab4.5_0004804g0050 Nicotiana tabacum HOM05D004762 ORTHO05D005972 1.0e-10 72.4 60 56.7
Sed0021837 Sechium edule HOM05D004762 ORTHO05D005972 3.9e-10 70.5 43 79.1
CDE06G2415 Ceratophyllum demersum HOM05D004141 ORTHO05D005416 6.7e-10 69.7 263 30.4
Lsat_1_v5_gn_3_79340 Lactuca sativa HOM05D004762 ORTHO05D231769 8.7e-10 69.3 68 55.9
Gorai.012G079400 Gossypium raimondii HOM05D004762 ORTHO05D046822 1.1e-09 68.9 149 35.6
arahy.Tifrunner.gnm1.ann1.9BEE5S Arachis hypogaea HOM05D004141 ORTHO05D005416 1.9e-09 68.2 279 27.2
Gohir.D05G318650 Gossypium hirsutum HOM05D004762 ORTHO05D005972 5.7e-09 66.6 47 70.2
Gohir.D07G108366 Gossypium hirsutum HOM05D004762 ORTHO05D046822 9.6e-09 65.9 52 61.5
GSVIVG01022727001 Vitis vinifera HOM05D004762 ORTHO05D005972 2.1e-08 64.7 51 58.8
MD13G1267900 Malus domestica HOM05D004762 ORTHO05D005972 2.8e-08 64.3 42 69.0
Medtr1g104880 Medicago truncatula HOM05D004141 ORTHO05D005416 3.7e-08 63.9 284 27.5
MCO01G083 Micromonas commoda HOM05D004141 ORTHO05D005416 3.7e-08 63.9 199 30.7
MD02G1220900 Malus domestica HOM05D004762 ORTHO05D005972 2.4e-07 61.2 45 64.4
Os04g0589600 Oryza sativa ssp. japonica HOM05D004141 ORTHO05D005416 4.1e-07 60.5 300 26.0
AagrBONN_evm.TU.Sc2ySwM_117.897 Anthoceros agrestis HOM05D004141 ORTHO05D005416 5.9e-06 56.6 320 25.0
Cpa.g.sc77.17 Carica papaya HOM05D004141 ORTHO05D005416 5.9e-06 56.6 299 26.4
Haze_26741 Corylus avellana HOM05D004141 ORTHO05D005416 7.6e-06 56.2 320 25.6
Aa31LG4G2230 Aethionema arabicum HOM05D004141 ORTHO05D005416 1.0e-05 55.8 275 23.6


User provided reference genes

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