Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0039758 Camellia sinensis var. sinensis HOM05D004586 ORTHO05D005266 0.0e+00 1140.6 719 100.0
Actinidia09891 Actinidia chinensis HOM05D004586 ORTHO05D005266 1.1e-184 651.0 734 62.0
Actinidia12449 Actinidia chinensis HOM05D004586 ORTHO05D005266 6.6e-174 615.1 777 57.0
Rhsim06G0149700 Rhododendron simsii HOM05D004586 ORTHO05D005266 5.4e-144 515.8 864 47.8
vmacro12267 Vaccinium macrocarpon HOM05D004586 ORTHO05D005266 7.9e-143 511.9 707 51.6
Hma1.2p1_0875F.1_g231553 Hydrangea macrophylla HOM05D004586 ORTHO05D005266 1.3e-134 484.6 771 51.4
Hma1.2p1_0875F.1_g231580 Hydrangea macrophylla HOM05D004586 ORTHO05D005266 1.3e-134 484.6 771 51.4
Ciclev10014470m.g Citrus clementina HOM05D004586 ORTHO05D005266 1.9e-112 411.0 766 45.4
QL10p048480 Quercus lobata HOM05D004586 ORTHO05D005266 1.1e-109 401.7 766 47.7
Nitab4.5_0009520g0030 Nicotiana tabacum HOM05D004586 ORTHO05D005266 4.4e-109 399.8 671 47.2
Atru.chr6.3049 Acer truncatum HOM05D004586 ORTHO05D005266 7.4e-109 399.1 770 47.5
Nitab4.5_0003018g0070 Nicotiana tabacum HOM05D004586 ORTHO05D005266 3.7e-108 396.7 669 46.6
GSVIVG01030569001 Vitis vinifera HOM05D004586 ORTHO05D005266 1.4e-107 394.8 465 51.2
Manes.12G079600 Manihot esculenta HOM05D004586 ORTHO05D005266 9.1e-107 392.1 484 50.2
Haze_13103 Corylus avellana HOM05D004586 ORTHO05D005266 2.6e-106 390.6 508 50.0
Lj1C734T7 Lonicera japonica HOM05D004586 ORTHO05D005266 5.9e-106 389.4 848 42.6
MSTRG.14187 Avicennia marina HOM05D004586 ORTHO05D005266 2.2e-105 387.5 727 44.3
COL.COLO4_13701 Corchorus olitorius HOM05D004586 ORTHO05D005266 5.5e-104 382.9 665 45.4
Oeu025511.1 Olea europaea HOM05D004586 ORTHO05D005266 5.5e-104 382.9 482 49.4
Thecc.02G173500 Theobroma cacao HOM05D004586 ORTHO05D005266 1.6e-103 381.3 747 42.3
TAR627G0949 Trochodendron aralioides HOM05D004586 ORTHO05D005266 2.1e-103 380.9 706 45.6
CANSAT64G2104 Cannabis sativa HOM05D004586 ORTHO05D005266 8.0e-103 379.0 504 47.2
CiPaw.03G171000 Carya illinoinensis HOM05D004586 ORTHO05D005266 5.2e-102 376.3 455 51.6
TWI36G0730 Tripterygium wilfordii HOM05D004586 ORTHO05D005266 4.4e-101 373.2 477 48.2
PGSC0003DMG400018364 Solanum tuberosum HOM05D004586 ORTHO05D005266 7.5e-101 372.5 687 44.7
Gohir.D13G149100 Gossypium hirsutum HOM05D004586 ORTHO05D005266 1.3e-100 371.7 482 48.1
Duzib052G0504 Durio zibethinus HOM05D004586 ORTHO05D005266 1.1e-99 368.6 755 41.7
Prupe.3G233000 Prunus persica HOM05D004586 ORTHO05D005266 1.1e-99 368.6 808 41.0
Solyc07g054460.4 Solanum lycopersicum HOM05D004586 ORTHO05D005266 4.1e-99 366.7 703 44.4
Gorai.013G166800 Gossypium raimondii HOM05D004586 ORTHO05D005266 5.3e-99 366.3 470 48.3
Peaxi162Scf00007g02845 Petunia axillaris HOM05D004586 ORTHO05D005266 7.0e-99 365.9 407 53.6
Duzib106G1111 Durio zibethinus HOM05D004586 ORTHO05D005266 1.2e-98 365.2 493 47.1
Potri.013G145300 Populus trichocarpa HOM05D004586 ORTHO05D005266 7.7e-98 362.5 771 42.2
Dinv15471 Davidia involucrata HOM05D004586 ORTHO05D005266 1.0e-97 362.1 364 58.2
Sopen07g028400 Solanum pennellii HOM05D004586 ORTHO05D005266 1.3e-97 361.7 410 54.9
Sabra13G0117000 Salix brachista HOM05D004586 ORTHO05D005266 2.2e-97 360.9 764 41.1
Peaxi162Scf00485g00032 Petunia axillaris HOM05D004586 ORTHO05D005266 5.0e-97 359.8 741 40.2
Gohir.A13G144300 Gossypium hirsutum HOM05D004586 ORTHO05D005266 3.2e-96 357.1 470 47.4
SalBow7G1236 Salvia bowleyana HOM05D004586 ORTHO05D005266 5.5e-96 356.3 692 43.9
SalBow1G4799 Salvia bowleyana HOM05D004586 ORTHO05D005266 2.1e-95 354.4 693 43.4
MD09G1092000 Malus domestica HOM05D004586 ORTHO05D005266 1.2e-93 348.6 794 40.8
TAR629G0893 Trochodendron aralioides HOM05D004586 ORTHO05D005266 1.5e-93 348.2 488 47.1
Cfa014556 Carpinus fangiana HOM05D004586 ORTHO05D005266 2.6e-93 347.4 752 44.7
CAN.G78.83 Capsicum annuum HOM05D004586 ORTHO05D005266 4.8e-92 343.2 721 41.5
MD17G1081900 Malus domestica HOM05D004586 ORTHO05D005266 6.3e-92 342.8 424 50.0
Cpa.g.sc34.112 Carica papaya HOM05D004586 ORTHO05D005266 2.0e-90 337.8 421 52.3
Eucgr.B03848 Eucalyptus grandis HOM05D004586 ORTHO05D005266 8.5e-89 332.4 773 39.6
COL.COLO4_08510 Corchorus olitorius HOM05D004586 ORTHO05D005266 2.5e-88 330.9 378 52.1
FAN09G2343 Fragaria x ananassa HOM05D004586 ORTHO05D005266 2.7e-87 327.4 425 50.1
RcHm_v2.0_Chr2g0162091 Rosa chinensis HOM05D004586 ORTHO05D005266 4.7e-87 326.6 679 44.2
FAN14G4866 Fragaria x ananassa HOM05D004586 ORTHO05D005266 4.0e-86 323.6 415 49.9
CAN.G996.7 Capsicum annuum HOM05D004586 ORTHO05D005266 6.8e-86 322.8 402 50.0
FvH4_6g44910 Fragaria vesca HOM05D004586 ORTHO05D005266 6.8e-86 322.8 420 49.5
SGA_v2.0_scaffold159G37633 Striga asiatica HOM05D004586 ORTHO05D005266 6.8e-86 322.8 683 43.8
TWI18G0514 Tripterygium wilfordii HOM05D004586 ORTHO05D005266 1.2e-85 322.0 795 39.7
HanXRQChr05g0140481 Helianthus annuus HOM05D004586 ORTHO05D005266 2.0e-85 321.2 395 52.2
FAN02G1766 Fragaria x ananassa HOM05D004586 ORTHO05D005266 4.4e-85 320.1 395 50.1
Potri.019G104400 Populus trichocarpa HOM05D004586 ORTHO05D005266 4.1e-83 313.5 742 41.8
FAN05G3704 Fragaria x ananassa HOM05D004586 ORTHO05D005266 1.2e-82 312.0 422 48.6
PGR042G3101 Punica granatum HOM05D004586 ORTHO05D005266 3.5e-82 310.5 487 46.2
Sed0007770 Sechium edule HOM05D004586 ORTHO05D005266 4.5e-82 310.1 379 49.1
Hund09647 Selenicereus undatus HOM05D004586 ORTHO05D005266 4.5e-82 310.1 452 46.2
SGA_v2.0_scaffold49G18309 Striga asiatica HOM05D004586 ORTHO05D005266 4.5e-82 310.1 646 38.9
Lj3g0023901 Lotus japonicus HOM05D004586 ORTHO05D005266 5.9e-82 309.7 341 51.6
Cc00_g21120 Coffea canephora HOM05D004586 ORTHO05D005266 1.0e-81 308.9 778 40.1
AUR62035735 Chenopodium quinoa HOM05D004586 ORTHO05D005266 1.1e-80 305.4 813 36.2
ClCG02G017410 Citrullus lanatus HOM05D004586 ORTHO05D005266 1.9e-80 304.7 391 47.8
Lsat_1_v5_gn_4_68860 Lactuca sativa HOM05D004586 ORTHO05D005266 1.9e-80 304.7 382 52.9
HanXRQChr14g0441421 Helianthus annuus HOM05D004586 ORTHO05D005266 3.3e-80 303.9 498 47.2
MBI02_g10548_MAGBIO Magnolia biondii HOM05D004586 ORTHO05D005266 9.5e-80 302.4 492 44.7
VMungo1127G2109 Vigna mungo HOM05D004586 ORTHO05D005266 4.7e-79 300.1 380 50.5
Phvul.011G112400 Phaseolus vulgaris HOM05D004586 ORTHO05D005266 1.4e-78 298.5 364 50.0
DCAR_019194 Daucus carota HOM05D004586 ORTHO05D005266 4.0e-78 297.0 671 36.5
ECA234G1777 Erigeron canadensis HOM05D004586 ORTHO05D005266 5.7e-77 293.1 218 71.1
MELO3C021880.2 Cucumis melo HOM05D004586 ORTHO05D005266 1.3e-76 292.0 336 50.0
MELO3C003861.2 Cucumis melo HOM05D004586 ORTHO05D005266 2.9e-76 290.8 386 45.3
THA.LOC104826023 Tarenaya hassleriana HOM05D004586 ORTHO05D005266 2.9e-76 290.8 412 47.3
Sc12g0002770 Simmondsia chinensis HOM05D004586 ORTHO05D005266 6.4e-76 289.7 536 44.4
arahy.Tifrunner.gnm1.ann1.FC6AAX Arachis hypogaea HOM05D004586 ORTHO05D005266 1.4e-75 288.5 339 51.3
Lalb_Chr01g0005391 Lupinus albus HOM05D004586 ORTHO05D005266 1.4e-75 288.5 369 49.6
CsaV3_2G036510 Cucumis sativus L. HOM05D004586 ORTHO05D005266 3.2e-75 287.3 530 44.3
EL10As5g23555 Beta vulgaris HOM05D004586 ORTHO05D005266 4.1e-75 287.0 815 35.5
Migut.H01030 Erythranthe guttata HOM05D004586 ORTHO05D005266 4.1e-75 287.0 603 43.3
Medtr0072s0050 Medicago truncatula HOM05D004586 ORTHO05D005266 4.1e-75 287.0 397 48.4
AL1G13040 Arabidopsis lyrata HOM05D004586 ORTHO05D005266 1.7e-73 281.6 396 45.7
AUR62000198 Chenopodium quinoa HOM05D004586 ORTHO05D005266 3.9e-73 280.4 510 39.6
Thhalv10006867m.g Eutrema salsugineum HOM05D004586 ORTHO05D005266 1.9e-72 278.1 389 46.0
PSO541G0834 Papaver somniferum HOM05D004586 ORTHO05D005266 3.3e-72 277.3 280 57.1
AT1G03530 Arabidopsis thaliana HOM05D004586 ORTHO05D005266 4.3e-72 276.9 392 46.9
arahy.Tifrunner.gnm1.ann1.SANC69 Arachis hypogaea HOM05D004586 ORTHO05D005266 5.6e-72 276.6 343 50.4
TPR.G21660 Trifolium pratense HOM05D004586 ORTHO05D005266 1.6e-71 275.0 418 46.4
unitig_26.g9937 Utricularia gibba HOM05D004586 ORTHO05D005266 1.6e-71 275.0 385 46.8
BcaB02g06919 Brassica carinata HOM05D004586 ORTHO05D005266 2.8e-71 274.2 394 47.0
Carub.0001s0267 Capsella rubella HOM05D004586 ORTHO05D005266 2.8e-71 274.2 392 45.7
Sp1g02460 Schrenkiella parvula HOM05D004586 ORTHO05D005266 2.3e-70 271.2 407 45.5
PSO675G0516 Papaver somniferum HOM05D004586 ORTHO05D005266 5.2e-70 270.0 460 41.3
Glyma.06G297000 Glycine max HOM05D004586 ORTHO05D005266 1.5e-69 268.5 311 50.5
Ca_27565_v3 Cicer arietinum L. HOM05D004586 ORTHO05D005266 3.4e-69 267.3 347 49.9
Ca_20687_v3 Cicer arietinum L. HOM05D004586 ORTHO05D005266 1.3e-68 265.4 356 47.8
Glyma.12G108100 Glycine max HOM05D004586 ORTHO05D005266 2.9e-68 264.2 323 49.2
Psat0s4261g0040 Pisum sativum HOM05D004586 ORTHO05D005266 2.9e-68 264.2 334 49.4
SHI10466 Sapria himalayana HOM05D004586 ORTHO05D005266 8.3e-68 262.7 433 42.3
C05p01990 Brassica napus HOM05D004586 ORTHO05D005266 1.4e-67 261.9 423 43.7
BraA10t42477Z Brassica rapa HOM05D000330 ORTHO05D000209 1.4e-67 261.9 213 65.3
A10p02080 Brassica napus HOM05D000330 ORTHO05D005266 4.1e-67 260.4 217 64.1
CARHR002890 Cardamine hirsuta HOM05D004586 ORTHO05D005266 1.0e-65 255.8 400 43.0
C08p00660 Brassica napus HOM05D004586 ORTHO05D005266 2.3e-65 254.6 412 43.7
Ah.01g003940 Amaranthus hybridus HOM05D004586 ORTHO05D005266 4.3e-64 250.4 351 46.7
PSO384G2677 Papaver somniferum HOM05D004586 ORTHO05D005266 1.2e-63 248.8 286 53.5
Lj3g0000702 Lotus japonicus HOM05D004586 ORTHO05D005266 1.6e-63 248.4 355 48.2
BcaC05g24523 Brassica carinata HOM05D004586 ORTHO05D005266 4.7e-63 246.9 426 42.7
BolC5t28977H Brassica oleracea HOM05D004586 ORTHO05D005266 4.7e-63 246.9 426 42.7
A08p37340 Brassica napus HOM05D004586 ORTHO05D005266 8.1e-63 246.1 420 41.2
ATR0693G407 Amborella trichopoda HOM05D004586 ORTHO05D005266 1.8e-62 245.0 347 48.1
HPP92_014062 Vanilla planifolia HOM05D004586 ORTHO05D005266 4.0e-62 243.8 349 45.8
Os05g0502800 Oryza sativa ssp. japonica HOM05D004586 ORTHO05D005266 3.7e-60 237.3 418 40.9
BraA08t35631Z Brassica rapa HOM05D004586 ORTHO05D005266 2.4e-59 234.6 423 41.1
Aa31LG1G20890 Aethionema arabicum HOM05D004586 ORTHO05D005266 3.5e-58 230.7 419 40.3
CDE02G0135 Ceratophyllum demersum HOM05D004586 ORTHO05D005266 4.6e-58 230.3 196 62.2
Nitab4.5_0007732g0010 Nicotiana tabacum HOM05D004586 ORTHO05D005266 1.7e-57 228.4 171 70.8
Nn1g03938 Nelumbo nucifera HOM05D004586 ORTHO05D005266 8.6e-57 226.1 182 65.4
TPR.G27075 Trifolium pratense HOM05D004586 ORTHO05D005266 1.1e-56 225.7 397 43.1
SEGI_15076 Sequoiadendron giganteum HOM05D004586 ORTHO05D005266 9.5e-56 222.6 212 56.1
Medtr2g090095 Medicago truncatula HOM05D004586 ORTHO05D005266 1.4e-54 218.8 417 38.6
BolC8t46864H Brassica oleracea HOM05D004586 ORTHO05D005266 8.9e-54 216.1 217 54.4
arahy.Tifrunner.gnm1.ann1.7D4Z5S Arachis hypogaea HOM05D004586 ORTHO05D005266 1.7e-52 211.8 213 55.9
Zm00001eb292050 Zea mays HOM05D004586 ORTHO05D005266 2.9e-52 211.1 323 42.1
Thhalv10024822m.g Eutrema salsugineum HOM05D004586 ORTHO05D005266 2.4e-51 208.0 390 39.0
arahy.Tifrunner.gnm1.ann1.IS01QF Arachis hypogaea HOM05D004586 ORTHO05D005266 1.0e-49 202.6 528 34.8
MBI02_g27225_MAGBIO Magnolia biondii HOM05D004586 ORTHO05D005266 1.2e-47 195.7 328 41.5
Psat5g270160 Pisum sativum HOM05D004586 ORTHO05D005266 2.1e-47 194.9 399 37.6
CDE02G4059 Ceratophyllum demersum HOM05D004586 ORTHO05D005266 6.9e-46 189.9 196 54.6
Lalb_Chr22g0356411 Lupinus albus HOM05D004586 ORTHO05D005266 2.2e-44 184.9 206 52.4
CBR_g12767 Chara braunii HOM05D004586 ORTHO05D005266 4.2e-43 180.6 191 52.9
SMO137G0274 Selaginella moellendorffii HOM05D004586 ORTHO05D005266 4.0e-38 164.1 136 54.4
SEGI_36208 Sequoiadendron giganteum HOM05D004586 ORTHO05D005266 9.0e-38 162.9 149 54.4
Pp3c14_14050 Physcomitrium patens HOM05D004586 ORTHO05D005266 2.9e-36 157.9 172 50.0
AagrBONN_evm.TU.Sc2ySwM_117.2920 Anthoceros agrestis HOM05D004586 ORTHO05D005266 6.4e-36 156.8 320 36.2
Mapoly0108s0039 Marchantia polymorpha HOM05D004586 ORTHO05D005266 6.0e-34 150.2 207 43.5
Pp3c10_10230 Physcomitrium patens HOM05D004586 ORTHO05D005266 1.0e-33 149.4 136 55.1
BcaB08g36102 Brassica carinata HOM05D004586 ORTHO05D005266 2.6e-29 134.8 95 70.5
DCAR_012988 Daucus carota HOM05D004586 ORTHO05D005266 4.5e-29 134.0 273 40.3
BcaB01g00913 Brassica carinata HOM05D004586 ORTHO05D005266 8.4e-28 129.8 120 59.2
Psat0s10217g0080 Pisum sativum HOM05D004586 ORTHO05D005266 3.3e-24 117.9 94 63.8
PSO339G0898 Papaver somniferum HOM05D004586 ORTHO05D005266 4.6e-18 97.4 83 59.0
Dinv01388 Davidia involucrata HOM05D033017 ORTHO05D005266 6.7e-17 93.6 163 49.7
Hma1.2p1_1100F.1_g257070 Hydrangea macrophylla HOM05D004586 ORTHO05D005266 5.7e-16 90.5 220 32.7
Medtr7g116780 Medicago truncatula HOM05D004586 ORTHO05D005266 7.4e-16 90.1 71 59.2
MCO05G032 Micromonas commoda HOM05D004586 ORTHO05D005266 1.1e-11 76.3 193 31.1
AL2G23840 Arabidopsis lyrata HOM05D020923 ORTHO05D021440 1.2e-10 72.8 100 42.0
Cre10.g467100 Chlamydomonas reinhardtii HOM05D004586 ORTHO05D005266 1.5e-08 65.9 157 29.9
SEGI_25704 Sequoiadendron giganteum HOM05D004586 ORTHO05D005266 3.3e-08 64.7 79 53.2
Carub.0006s3370 Capsella rubella HOM05D020923 ORTHO05D021440 1.3e-07 62.8 110 35.5
Actinidia01442 Actinidia chinensis HOM05D004586 ORTHO05D005266 3.7e-07 61.2 89 49.4


User provided reference genes

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