Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0039756 Camellia sinensis var. sinensis HOM05D004148 ORTHO05D004709 3.5e-233 811.2 404 100.0
CSS0039701 Camellia sinensis var. sinensis HOM05D004148 ORTHO05D004709 1.8e-229 798.9 424 95.0
Rhsim13G0199700 Rhododendron simsii HOM05D004148 ORTHO05D004709 1.4e-157 560.1 470 65.1
Dinv32838 Davidia involucrata HOM05D004148 ORTHO05D004709 1.3e-155 553.5 467 65.1
Actinidia12896 Actinidia chinensis HOM05D001400 ORTHO05D001795 7.3e-146 521.2 461 63.1
Haze_23628 Corylus avellana HOM05D004148 ORTHO05D004709 1.2e-143 513.8 467 60.8
Cfa010235 Carpinus fangiana HOM05D004148 ORTHO05D004709 1.5e-143 513.5 469 60.3
Prupe.6G151400 Prunus persica HOM05D004148 ORTHO05D004709 1.7e-139 500.0 453 60.7
Lj2A891G11 Lonicera japonica HOM05D004148 ORTHO05D004709 1.6e-137 493.4 473 59.0
TAR623G1397 Trochodendron aralioides HOM05D004148 ORTHO05D004709 8.1e-137 491.1 468 58.3
MD03G1162400 Malus domestica HOM05D004148 ORTHO05D004709 1.8e-136 490.0 453 59.4
Atru.chr3.3014 Acer truncatum HOM05D004148 ORTHO05D004709 2.4e-136 489.6 466 57.7
GSVIVG01022379001 Vitis vinifera HOM05D004148 ORTHO05D004709 1.9e-133 479.9 455 58.2
Thecc.09G266000 Theobroma cacao HOM05D004148 ORTHO05D004709 1.2e-132 477.2 472 57.0
Gorai.009G080700 Gossypium raimondii HOM05D004148 ORTHO05D004709 7.8e-132 474.6 473 56.4
Ciclev10027694m.g Citrus clementina HOM05D004148 ORTHO05D004709 1.7e-131 473.4 453 58.3
Gohir.D05G079200 Gossypium hirsutum HOM05D004148 ORTHO05D004709 2.3e-131 473.0 473 56.2
MD11G1178600 Malus domestica HOM05D004148 ORTHO05D004709 3.0e-131 472.6 453 58.9
Nn2g14486 Nelumbo nucifera HOM05D004148 ORTHO05D004709 5.1e-131 471.9 478 55.6
Gohir.A05G076400 Gossypium hirsutum HOM05D004148 ORTHO05D004709 8.6e-131 471.1 477 56.8
QL01p018674 Quercus lobata HOM05D004148 ORTHO05D004709 7.3e-130 468.0 458 57.6
RcHm_v2.0_Chr5g0049541 Rosa chinensis HOM05D004148 ORTHO05D004709 1.4e-128 463.8 450 58.2
FAN12G2472 Fragaria x ananassa HOM05D004148 ORTHO05D004709 4.4e-127 458.8 445 58.2
FvH4_4g33990 Fragaria vesca HOM05D004148 ORTHO05D004709 1.3e-126 457.2 445 58.2
FAN17G2621 Fragaria x ananassa HOM05D004148 ORTHO05D004709 1.3e-126 457.2 445 58.0
CANSAT54G2785 Cannabis sativa HOM05D004148 ORTHO05D004709 3.8e-126 455.7 469 56.3
FAN22G0787 Fragaria x ananassa HOM05D004148 ORTHO05D004709 1.1e-125 454.1 445 57.8
TWI60G0836 Tripterygium wilfordii HOM05D004148 ORTHO05D004709 9.6e-122 441.0 472 53.4
Hma1.2p1_0218F.1_g092390 Hydrangea macrophylla HOM05D004148 ORTHO05D004709 6.2e-121 438.3 622 45.7
Lsat_1_v5_gn_5_75780 Lactuca sativa HOM05D004148 ORTHO05D004709 2.6e-119 433.0 444 55.4
ClCG05G010880 Citrullus lanatus HOM05D004148 ORTHO05D004709 2.2e-118 429.9 476 51.7
MELO3C020298.2 Cucumis melo HOM05D004148 ORTHO05D004709 2.9e-118 429.5 473 51.2
CsaV3_3G017640 Cucumis sativus L. HOM05D004148 ORTHO05D004709 2.9e-118 429.5 473 51.2
PGR102G2778 Punica granatum HOM05D004148 ORTHO05D004709 3.8e-118 429.1 473 52.0
VMungo1215G0285 Vigna mungo HOM05D004148 ORTHO05D004709 3.8e-118 429.1 467 51.0
Potri.009G153300 Populus trichocarpa HOM05D004148 ORTHO05D004709 6.4e-118 428.3 454 55.3
Sed0012220 Sechium edule HOM05D004148 ORTHO05D004709 1.4e-117 427.2 474 50.8
PSO339G2294 Papaver somniferum HOM05D004148 ORTHO05D004709 2.4e-117 426.4 478 51.7
EL10Ac7g16248 Beta vulgaris HOM05D004148 ORTHO05D004709 6.0e-116 421.8 475 51.8
HanXRQChr03g0089821 Helianthus annuus HOM05D004148 ORTHO05D004709 7.9e-116 421.4 457 51.9
Cpa.g.sc103.97 Carica papaya HOM05D004148 ORTHO05D004709 1.0e-115 421.0 467 52.9
arahy.Tifrunner.gnm1.ann1.SF9HJV Arachis hypogaea HOM05D004148 ORTHO05D004709 1.3e-115 420.6 461 50.8
AUR62020189 Chenopodium quinoa HOM05D004148 ORTHO05D004709 3.0e-115 419.5 473 49.7
PSO384G5014 Papaver somniferum HOM05D004148 ORTHO05D004709 3.9e-115 419.1 478 51.0
Cc00_g06190 Coffea canephora HOM05D004148 ORTHO05D004709 4.3e-114 415.6 457 51.9
Lj1g0011831 Lotus japonicus HOM05D004148 ORTHO05D004709 4.3e-114 415.6 456 52.4
Ah.15g099170 Amaranthus hybridus HOM05D004148 ORTHO05D004709 1.6e-113 413.7 471 49.9
Phvul.002G053700 Phaseolus vulgaris HOM05D004148 ORTHO05D004709 6.2e-113 411.8 465 49.7
Hund18819 Selenicereus undatus HOM05D004148 ORTHO05D004709 2.4e-112 409.8 468 49.6
Nitab4.5_0000615g0090 Nicotiana tabacum HOM05D004148 ORTHO05D004709 7.6e-111 404.8 456 49.1
Eucgr.B03795 Eucalyptus grandis HOM05D004148 ORTHO05D004709 3.8e-110 402.5 476 48.7
Nitab4.5_0005222g0040 Nicotiana tabacum HOM05D004148 ORTHO05D004709 4.9e-110 402.1 457 49.5
Sc06g0008560 Simmondsia chinensis HOM05D004148 ORTHO05D004709 4.9e-110 402.1 474 48.5
Aqoxy1G00551 Aquilegia oxysepala HOM05D004148 ORTHO05D004709 1.1e-109 401.0 458 48.9
Glyma.01G244400 Glycine max HOM05D004148 ORTHO05D004709 1.9e-109 400.2 442 52.0
Oeu048810.1 Olea europaea HOM05D004148 ORTHO05D004709 2.7e-108 396.4 449 51.0
Solyc11g071570.3 Solanum lycopersicum HOM05D004148 ORTHO05D004709 3.5e-108 396.0 455 50.1
Migut.D00721 Erythranthe guttata HOM05D004148 ORTHO05D004709 1.3e-107 394.0 458 49.6
Sopen11g029250 Solanum pennellii HOM05D004148 ORTHO05D004709 1.8e-107 393.7 456 49.6
CARHR108980 Cardamine hirsuta HOM05D004148 ORTHO05D004709 2.3e-107 393.3 451 49.7
Peaxi162Scf00217g00627 Petunia axillaris HOM05D004148 ORTHO05D004709 2.8e-105 386.3 454 49.3
CAN.G439.18 Capsicum annuum HOM05D004148 ORTHO05D004709 6.2e-105 385.2 455 49.2
ECA233G2337 Erigeron canadensis HOM05D004148 ORTHO05D004709 2.4e-104 383.3 471 50.1
THA.LOC104815063 Tarenaya hassleriana HOM05D004148 ORTHO05D004709 2.4e-104 383.3 477 48.2
BcaC01g02217 Brassica carinata HOM05D004148 ORTHO05D004709 2.9e-102 376.3 450 49.1
BolSC21t60233H Brassica oleracea HOM05D004148 ORTHO05D004709 2.5e-101 373.2 450 48.7
Psat4g228400 Pisum sativum HOM05D004148 ORTHO05D004709 2.5e-101 373.2 442 49.5
MSTRG.21311 Avicennia marina HOM05D004148 ORTHO05D004709 9.3e-101 371.3 449 48.6
BcaB02g10777 Brassica carinata HOM05D004148 ORTHO05D004709 2.7e-100 369.8 454 48.9
SalBow6G3333 Salvia bowleyana HOM05D004148 ORTHO05D004709 3.5e-100 369.4 459 49.2
Aa31LG4G13420 Aethionema arabicum HOM05D004148 ORTHO05D004709 2.3e-99 366.7 475 46.3
AT3G43610 Arabidopsis thaliana HOM05D004148 ORTHO05D004709 2.3e-99 366.7 454 47.8
Carub.0005s0948 Capsella rubella HOM05D004148 ORTHO05D004709 2.3e-99 366.7 461 47.9
AL5G21540 Arabidopsis lyrata HOM05D004148 ORTHO05D004709 3.0e-99 366.3 465 47.5
Sp5g17550 Schrenkiella parvula HOM05D004148 ORTHO05D004709 3.0e-99 366.3 469 46.3
Thhalv10002374m.g Eutrema salsugineum HOM05D004148 ORTHO05D004709 1.6e-97 360.5 455 46.8
BolC3t19498H Brassica oleracea HOM05D004148 ORTHO05D004709 1.8e-96 357.1 449 47.4
C03p72000 Brassica napus HOM05D004148 ORTHO05D004709 3.1e-96 356.3 467 46.7
A06p19850 Brassica napus HOM05D004148 ORTHO05D004709 4.1e-96 355.9 466 45.7
BraA06t25067Z Brassica rapa HOM05D004148 ORTHO05D004709 5.3e-96 355.5 453 47.5
BcaC01g01775 Brassica carinata HOM05D004148 ORTHO05D004709 6.9e-96 355.1 467 46.5
Medtr5g004880 Medicago truncatula HOM05D004148 ORTHO05D004709 2.7e-92 343.2 437 48.7
Hma1.2p1_2711F.1_g327330 Hydrangea macrophylla HOM05D004148 ORTHO05D004709 8.8e-91 338.2 436 47.0
arahy.Tifrunner.gnm1.ann1.J94639 Arachis hypogaea HOM05D004148 ORTHO05D004709 1.1e-88 331.3 439 45.3
ATR0697G020 Amborella trichopoda HOM05D004148 ORTHO05D004709 6.9e-88 328.6 510 40.8
SGA_v2.0_scaffold29G12109 Striga asiatica HOM05D004148 ORTHO05D004709 6.9e-88 328.6 489 43.4
DCAR_012264 Daucus carota HOM05D000495 ORTHO05D000357 3.8e-86 322.8 405 50.4
Lalb_Chr16g0376251 Lupinus albus HOM05D004148 ORTHO05D004709 5.0e-86 322.4 430 45.8
HPP92_019532 Vanilla planifolia HOM05D004148 ORTHO05D004709 8.5e-86 321.6 465 43.0
CDE07G1769 Ceratophyllum demersum HOM05D004148 ORTHO05D004709 5.5e-85 318.9 454 44.7
vmacro04063 Vaccinium macrocarpon HOM05D004148 ORTHO05D004709 1.8e-80 303.9 315 57.8
Zm00001eb073760 Zea mays HOM05D004148 ORTHO05D004709 3.1e-80 303.1 465 39.8
MBI11_g07705_MAGBIO Magnolia biondii HOM05D004148 ORTHO05D004709 1.2e-79 301.2 382 47.9
BcaB01g00875 Brassica carinata HOM05D004148 ORTHO05D004709 9.1e-64 248.4 307 46.9
COL.COLO4_25330 Corchorus olitorius HOM05D004148 ORTHO05D004709 5.9e-63 245.7 297 50.8
FvH4_3g27031 Fragaria vesca HOM05D004148 ORTHO05D004709 3.2e-61 240.0 260 50.4
Duzib168G1551 Durio zibethinus HOM05D004148 ORTHO05D004709 2.3e-59 233.8 179 63.1
Manes.04G054800 Manihot esculenta HOM05D004148 ORTHO05D004709 1.4e-56 224.6 179 63.1
Ca_24340_v3 Cicer arietinum L. HOM05D004148 ORTHO05D004709 2.3e-54 217.2 175 62.3
A06p26680 Brassica napus HOM05D004148 ORTHO05D004709 3.6e-52 209.9 197 53.3
Carub.0005s0934 Capsella rubella HOM05D004148 ORTHO05D004709 4.7e-52 209.5 307 46.3
unitig_21.g20312 Utricularia gibba HOM05D004148 ORTHO05D004709 2.6e-50 203.8 292 45.5
FAN16G3212 Fragaria x ananassa HOM05D004148 ORTHO05D004709 1.2e-42 178.3 339 37.8
Os04g0566900 Oryza sativa ssp. japonica HOM05D004148 ORTHO05D004709 6.4e-41 172.6 288 40.3
SHI25295 Sapria himalayana HOM05D004148 ORTHO05D004709 1.1e-40 171.8 179 47.5
Mapoly0099s0003 Marchantia polymorpha HOM05D004148 ORTHO05D004709 7.8e-39 165.6 491 29.3
vmacro04062 Vaccinium macrocarpon HOM05D004148 ORTHO05D004709 1.7e-33 147.9 105 71.4
SHI25296 Sapria himalayana HOM05D004148 ORTHO05D004709 6.4e-33 146.0 217 47.0
AagrBONN_evm.TU.Sc2ySwM_228.375 Anthoceros agrestis HOM05D004148 ORTHO05D004709 7.8e-31 139.0 466 28.5
BolC8t48007H Brassica oleracea HOM05D004148 ORTHO05D004709 3.0e-30 137.1 179 49.2
Psat6g175800 Pisum sativum HOM05D004148 ORTHO05D004709 2.1e-28 131.0 131 50.4
Pp3c11_24620 Physcomitrium patens HOM05D004148 ORTHO05D004709 2.8e-28 130.6 256 33.2
SEGI_18042 Sequoiadendron giganteum HOM05D004148 ORTHO05D004709 1.4e-27 128.3 191 39.3
Zm00001eb428880 Zea mays HOM05D004148 ORTHO05D004709 1.2e-26 125.2 428 25.9
SEGI_35526 Sequoiadendron giganteum HOM05D004148 ORTHO05D004709 1.6e-23 114.8 279 34.1
CBR_g23077 Chara braunii HOM05D004148 ORTHO05D004709 3.0e-22 110.5 154 42.2
C05p34090 Brassica napus HOM05D004148 ORTHO05D004709 3.9e-22 110.2 121 53.7
BraA06t25600Z Brassica rapa HOM05D004148 ORTHO05D004709 4.3e-21 106.7 96 57.3
Psat6g091080 Pisum sativum HOM05D004333 ORTHO05D005363 2.4e-19 100.9 104 51.0
A08p06640 Brassica napus HOM05D004148 ORTHO05D004709 1.2e-18 98.6 117 51.3
BraA07t28462Z Brassica rapa HOM05D004148 ORTHO05D004709 9.9e-18 95.5 116 51.7
BraA05t21194Z Brassica rapa HOM05D004148 ORTHO05D004709 1.1e-13 82.0 117 47.9
A08p03240 Brassica napus HOM05D004148 ORTHO05D004709 2.5e-13 80.9 116 45.7
A09p33570 Brassica napus HOM05D004148 ORTHO05D004709 2.8e-12 77.4 114 44.7
A10p16420 Brassica napus HOM05D004148 ORTHO05D004709 2.8e-12 77.4 114 44.7
C06p15540 Brassica napus HOM05D004148 ORTHO05D004709 2.8e-12 77.4 114 44.7
C08p23060 Brassica napus HOM05D004148 ORTHO05D004709 2.8e-12 77.4 114 44.7
CARHR148440 Cardamine hirsuta HOM05D004148 ORTHO05D004709 6.2e-12 76.3 119 42.9
A05p23300 Brassica napus HOM05D004148 ORTHO05D004709 2.0e-10 71.2 116 42.2
AL6G28480 Arabidopsis lyrata HOM05D005083 ORTHO05D006310 6.6e-06 56.2 374 23.8
EL10Ac4g10018 Beta vulgaris HOM05D005083 ORTHO05D006310 6.6e-06 56.2 326 25.5


User provided reference genes

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