Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0039746 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 1.7e-254 882.1 426 100.0
CSS0024274 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 1.0e-251 872.8 430 98.6
Dinv35069 Davidia involucrata HOM05D001104 ORTHO05D006624 4.7e-236 820.8 426 91.1
Actinidia06020 Actinidia chinensis HOM05D001104 ORTHO05D006624 2.7e-231 805.1 424 91.0
Dinv33487 Davidia involucrata HOM05D001104 ORTHO05D006624 5.0e-230 800.8 423 90.1
Rhsim10G0021500 Rhododendron simsii HOM05D001104 ORTHO05D006624 8.6e-230 800.0 426 89.9
Hma1.2p1_0993F.1_g245480 Hydrangea macrophylla HOM05D001104 ORTHO05D006624 9.5e-229 796.6 426 89.4
Cc07_g02180 Coffea canephora HOM05D001104 ORTHO05D006624 1.5e-226 789.3 426 88.3
Oeu062922.1 Olea europaea HOM05D001104 ORTHO05D006624 4.9e-225 784.3 426 87.1
Actinidia35743 Actinidia chinensis HOM05D001104 ORTHO05D006624 1.8e-224 782.3 426 88.0
Nitab4.5_0001709g0040 Nicotiana tabacum HOM05D001104 ORTHO05D006624 4.3e-221 771.2 426 85.2
Cpa.g.sc215.8 Carica papaya HOM05D001104 ORTHO05D006624 9.5e-221 770.0 426 84.3
Solyc02g067740.4 Solanum lycopersicum HOM05D001104 ORTHO05D006624 1.2e-220 769.6 427 85.5
MSTRG.15512 Avicennia marina HOM05D001104 ORTHO05D006624 2.1e-220 768.8 426 84.5
TWI12G0063 Tripterygium wilfordii HOM05D001104 ORTHO05D006624 6.2e-220 767.3 426 85.0
Sopen02g016860 Solanum pennellii HOM05D001104 ORTHO05D006624 2.3e-219 765.4 427 85.0
PGSC0003DMG400006955 Solanum tuberosum HOM05D001104 ORTHO05D006624 1.2e-218 763.1 427 85.2
CAN.G973.9 Capsicum annuum HOM05D001104 ORTHO05D006624 2.9e-217 758.4 426 84.5
Atru.chr6.2305 Acer truncatum HOM05D001104 ORTHO05D006624 8.3e-217 756.9 426 83.3
Sed0005946 Sechium edule HOM05D001104 ORTHO05D006624 2.4e-216 755.4 426 83.6
Haze_14675 Corylus avellana HOM05D001104 ORTHO05D006624 3.2e-216 755.0 423 85.1
Prupe.3G285400 Prunus persica HOM05D001104 ORTHO05D006624 4.1e-216 754.6 435 82.5
CiPaw.03G038600 Carya illinoinensis HOM05D001104 ORTHO05D006624 6.0e-215 750.7 426 84.3
vmacro05831 Vaccinium macrocarpon HOM05D001104 ORTHO05D006624 3.0e-214 748.4 434 84.1
MELO3C021546.2 Cucumis melo HOM05D001104 ORTHO05D006624 9.5e-213 743.4 428 82.2
CsaV3_5G027380 Cucumis sativus L. HOM05D001104 ORTHO05D006624 9.5e-213 743.4 428 82.0
Potri.001G348700 Populus trichocarpa HOM05D001104 ORTHO05D006624 1.2e-212 743.0 426 81.9
TAR374G1405 Trochodendron aralioides HOM05D001104 ORTHO05D006624 2.1e-212 742.3 426 82.4
Migut.H00115 Erythranthe guttata HOM05D001104 ORTHO05D006624 3.6e-212 741.5 411 85.4
Ciclev10015353m.g Citrus clementina HOM05D001104 ORTHO05D006624 3.1e-211 738.4 426 81.5
Thecc.04G010000 Theobroma cacao HOM05D001104 ORTHO05D006624 2.0e-210 735.7 426 81.5
MD17G1034200 Malus domestica HOM05D001104 ORTHO05D006624 4.9e-209 731.1 447 77.6
Duzib147G0036 Durio zibethinus HOM05D001104 ORTHO05D006624 1.2e-207 726.5 425 80.0
Lj7C592G4 Lonicera japonica HOM05D001104 ORTHO05D006624 4.6e-207 724.5 426 81.7
GSVIVG01032469001 Vitis vinifera HOM05D001104 ORTHO05D006624 6.6e-206 720.7 426 80.3
Peaxi162Scf00933g00005 Petunia axillaris HOM05D001104 ORTHO05D006624 8.1e-204 713.8 392 85.7
Eucgr.I01793 Eucalyptus grandis HOM05D001104 ORTHO05D006624 2.0e-202 709.1 429 79.3
Hma1.2p1_3249F.1_g334430 Hydrangea macrophylla HOM05D001104 ORTHO05D006624 2.0e-202 709.1 394 86.5
HanXRQChr14g0450311 Helianthus annuus HOM05D001104 ORTHO05D006624 2.9e-201 705.3 426 77.7
Gohir.A07G220700 Gossypium hirsutum HOM05D001104 ORTHO05D006624 3.8e-201 704.9 426 77.2
Nn4g22776 Nelumbo nucifera HOM05D001104 ORTHO05D006624 3.8e-201 704.9 427 77.3
SalBow1G5303 Salvia bowleyana HOM05D001104 ORTHO05D006624 3.8e-201 704.9 428 78.7
Gorai.001G262300 Gossypium raimondii HOM05D001104 ORTHO05D006624 8.4e-201 703.7 426 77.2
CANSAT64G0855 Cannabis sativa HOM05D001104 ORTHO05D006624 1.9e-200 702.6 426 78.6
RcHm_v2.0_Chr2g0171701 Rosa chinensis HOM05D001104 ORTHO05D006624 3.2e-200 701.8 442 75.8
ECA232G2826 Erigeron canadensis HOM05D001104 ORTHO05D006624 5.4e-200 701.0 427 77.0
Cfa007422 Carpinus fangiana HOM05D001104 ORTHO05D006624 9.2e-200 700.3 390 86.2
COL.COLO4_28978 Corchorus olitorius HOM05D001104 ORTHO05D006624 2.7e-199 698.7 449 75.9
QL02p076349 Quercus lobata HOM05D001104 ORTHO05D006624 4.6e-199 698.0 427 78.5
ClCG09G018970 Citrullus lanatus HOM05D001104 ORTHO05D006624 1.3e-198 696.4 478 70.9
ECA238G2799 Erigeron canadensis HOM05D001104 ORTHO05D006624 5.6e-197 691.0 426 77.2
FAN14G0697 Fragaria x ananassa HOM05D001104 ORTHO05D006624 3.6e-196 688.3 443 74.5
FvH4_6g50760 Fragaria vesca HOM05D001104 ORTHO05D006624 4.7e-196 688.0 443 74.5
FAN05G2035 Fragaria x ananassa HOM05D001104 ORTHO05D006624 3.1e-195 685.3 442 74.4
MD09G1032600 Malus domestica HOM05D001104 ORTHO05D006624 4.0e-195 684.9 447 75.2
HanXRQChr09g0266171 Helianthus annuus HOM05D001104 ORTHO05D006624 4.4e-194 681.4 426 75.8
arahy.Tifrunner.gnm1.ann1.PA6DSG Arachis hypogaea HOM05D001104 ORTHO05D006624 1.4e-192 676.4 426 74.4
Aqoxy3G01030 Aquilegia oxysepala HOM05D001104 ORTHO05D006624 6.0e-191 671.0 428 76.2
PSO478G3469 Papaver somniferum HOM05D001104 ORTHO05D006624 3.3e-189 665.2 419 76.8
DCAR_011201 Daucus carota HOM05D001104 ORTHO05D006624 2.8e-188 662.1 395 78.2
PGR142G0881 Punica granatum HOM05D001104 ORTHO05D006624 1.4e-187 659.8 421 73.9
Medtr6g007040 Medicago truncatula HOM05D001104 ORTHO05D006624 2.4e-187 659.1 424 73.1
arahy.Tifrunner.gnm1.ann1.S5BZSG Arachis hypogaea HOM05D001104 ORTHO05D006624 5.3e-187 657.9 446 70.4
Glyma.19G007900 Glycine max HOM05D001104 ORTHO05D006624 6.9e-187 657.5 422 74.9
THA.LOC104825337 Tarenaya hassleriana HOM05D001104 ORTHO05D006624 1.2e-186 656.8 429 73.2
BcaC06g30950 Brassica carinata HOM05D001104 ORTHO05D006624 3.4e-186 655.2 429 74.1
Phvul.004G013700 Phaseolus vulgaris HOM05D001104 ORTHO05D006624 5.8e-186 654.4 428 73.1
Sp2g16980 Schrenkiella parvula HOM05D001104 ORTHO05D006624 1.3e-185 653.3 428 74.3
VMungo0464G0407 Vigna mungo HOM05D001104 ORTHO05D006624 2.9e-185 652.1 427 71.7
BcaC06g33770 Brassica carinata HOM05D001104 ORTHO05D006624 8.4e-185 650.6 428 73.6
C07p37130 Brassica napus HOM05D001104 ORTHO05D006624 8.4e-185 650.6 428 73.6
Thhalv10004293m.g Eutrema salsugineum HOM05D001104 ORTHO05D006624 8.4e-185 650.6 427 74.5
SGA_v2.0_scaffold135G34875 Striga asiatica HOM05D001104 ORTHO05D006624 1.6e-183 646.4 370 84.1
CSS0016338 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 1.3e-182 643.3 457 73.1
Gohir.D07G227400 Gossypium hirsutum HOM05D001104 ORTHO05D006624 5.1e-182 641.3 394 75.9
Lsat_1_v5_gn_4_182480 Lactuca sativa HOM05D001104 ORTHO05D006624 6.2e-180 634.4 426 71.4
DCAR_015045 Daucus carota HOM05D001104 ORTHO05D006624 6.9e-179 630.9 452 68.1
Ca_04192_v3 Cicer arietinum L. HOM05D001104 ORTHO05D006624 1.2e-178 630.2 425 70.8
Lalb_Chr06g0176011 Lupinus albus HOM05D001104 ORTHO05D006624 2.0e-178 629.4 413 71.4
Lj2g0012499 Lotus japonicus HOM05D001104 ORTHO05D006624 9.9e-178 627.1 428 70.6
Carub.0005s0650 Capsella rubella HOM05D001104 ORTHO05D006624 1.3e-177 626.7 427 71.0
PSO017G6424 Papaver somniferum HOM05D001104 ORTHO05D006624 1.7e-177 626.3 419 72.8
AT3G27930 Arabidopsis thaliana HOM05D001104 ORTHO05D006624 4.9e-177 624.8 427 71.0
AL5G17430 Arabidopsis lyrata HOM05D001104 ORTHO05D006624 4.2e-176 621.7 427 69.6
MBI16_g05636_MAGBIO Magnolia biondii HOM05D001104 ORTHO05D006624 5.5e-176 621.3 394 74.9
CARHR149500 Cardamine hirsuta HOM05D001104 ORTHO05D006624 2.7e-175 619.0 432 69.7
FAN02G3192 Fragaria x ananassa HOM05D001104 ORTHO05D006624 6.7e-174 614.4 497 63.0
EL10Ac4g08579 Beta vulgaris HOM05D001104 ORTHO05D006624 3.3e-173 612.1 426 68.8
ATR0730G148 Amborella trichopoda HOM05D001104 ORTHO05D006624 1.6e-172 609.8 428 68.0
Sc03g0007930 Simmondsia chinensis HOM05D001104 ORTHO05D006624 7.9e-167 590.9 345 80.9
Aa31LG2G4840 Aethionema arabicum HOM05D001104 ORTHO05D006285 3.0e-166 589.0 381 74.8
Manes.17G117000 Manihot esculenta HOM05D001104 ORTHO05D006624 1.8e-163 579.7 426 67.6
Nitab4.5_0001125g0070 Nicotiana tabacum HOM05D001104 ORTHO05D006624 3.4e-162 575.5 431 68.0
Oeu043054.1 Olea europaea HOM05D001104 ORTHO05D006285 2.2e-161 572.8 385 74.5
vmacro18250 Vaccinium macrocarpon HOM05D001104 ORTHO05D006624 2.5e-160 569.3 426 68.1
CSS0012459 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 2.1e-159 566.2 436 68.8
Os05g0577800 Oryza sativa ssp. japonica HOM05D001104 ORTHO05D006624 2.1e-159 566.2 422 62.6
CDE06G1183 Ceratophyllum demersum HOM05D001104 ORTHO05D006624 4.7e-151 538.5 426 61.7
HPP92_024321 Vanilla planifolia HOM05D001104 ORTHO05D006285 2.0e-146 523.1 356 68.3
BcaC03g17495 Brassica carinata HOM05D001104 ORTHO05D006624 3.9e-142 508.8 399 64.9
unitig_899.g15491 Utricularia gibba HOM05D000928 ORTHO05D001186 6.3e-140 501.5 400 62.8
Psat1g057160 Pisum sativum HOM05D001104 ORTHO05D006624 1.1e-131 474.2 302 73.5
Rhsim08G0054100 Rhododendron simsii HOM05D001104 ORTHO05D006285 3.2e-128 462.6 423 59.1
AUR62029365 Chenopodium quinoa HOM05D001104 ORTHO05D006624 1.8e-126 456.8 421 55.3
Os05g0577900 Oryza sativa ssp. japonica HOM05D001104 ORTHO05D006624 7.5e-125 451.4 422 53.3
A06p40770 Brassica napus HOM05D001104 ORTHO05D006624 1.6e-122 443.7 291 74.2
BolC7t44224H Brassica oleracea HOM05D001104 ORTHO05D006624 4.5e-122 442.2 290 74.1
BraA06t26998Z Brassica rapa HOM05D001104 ORTHO05D006624 5.9e-122 441.8 290 74.1
C02p54520 Brassica napus HOM05D001104 ORTHO05D006624 6.8e-118 428.3 426 54.7
AUR62043218 Chenopodium quinoa HOM05D001104 ORTHO05D006624 8.9e-118 427.9 426 54.0
C02p54570 Brassica napus HOM05D001104 ORTHO05D006624 1.5e-112 410.6 440 51.4
AagrBONN_evm.TU.Sc2ySwM_340.221 Anthoceros agrestis HOM05D001104 ORTHO05D006624 8.0e-111 404.8 434 47.9
BolC2t11515H Brassica oleracea HOM05D001104 ORTHO05D006624 7.5e-101 371.7 626 38.8
Pp3c25_9610 Physcomitrium patens HOM05D001104 ORTHO05D006624 1.4e-99 367.5 432 45.4
HanXRQChr06g0175561 Helianthus annuus HOM05D001104 ORTHO05D006624 1.6e-95 354.0 287 62.0
Zm00001eb344500 Zea mays HOM05D001104 ORTHO05D006624 2.1e-95 353.6 269 62.1
TPR.G2265 Trifolium pratense HOM05D001104 ORTHO05D006624 6.0e-90 335.5 200 77.0
Hund10304 Selenicereus undatus HOM05D001104 ORTHO05D006624 5.1e-89 332.4 265 62.3
A02p35680 Brassica napus HOM05D001104 ORTHO05D006624 2.4e-86 323.6 693 33.3
BraA02t08571Z Brassica rapa HOM05D001104 ORTHO05D006624 6.2e-63 245.7 532 33.6
BolC2t11520H Brassica oleracea HOM05D001104 ORTHO05D006624 2.4e-62 243.8 322 46.3
Psat0s3401g0080 Pisum sativum HOM05D001104 ORTHO05D006624 7.4e-56 222.2 145 72.4
Cfa008567 Carpinus fangiana HOM05D001104 ORTHO05D006624 2.8e-55 220.3 163 69.9
A06p40780 Brassica napus HOM05D001104 ORTHO05D006624 9.7e-48 195.3 122 73.0
BraA02t08570Z Brassica rapa HOM05D001104 ORTHO05D006624 1.7e-44 184.5 120 70.8
SEGI_13753 Sequoiadendron giganteum HOM05D001104 ORTHO05D006624 9.7e-40 168.7 149 54.4
Oeu043225.1 Olea europaea HOM05D003428 ORTHO05D006624 1.1e-38 165.2 288 37.2
Oeu051906.1 Olea europaea HOM05D003428 ORTHO05D006624 3.1e-38 163.7 288 37.2
Psat1g219520 Pisum sativum HOM05D001104 ORTHO05D006624 5.1e-33 146.4 112 64.3
Glyma.05G007402 Glycine max HOM05D001104 ORTHO05D006624 2.8e-31 140.6 82 80.5
Actinidia36089 Actinidia chinensis HOM05D001104 ORTHO05D006624 1.7e-28 131.3 69 91.3
Thecc.04G111800 Theobroma cacao HOM05D001104 ORTHO05D006624 2.0e-24 117.9 85 61.2
Cfa008566 Carpinus fangiana HOM05D001104 ORTHO05D006624 1.8e-22 111.3 58 87.9
HanXRQChr16g0517041 Helianthus annuus HOM05D001104 ORTHO05D006624 6.8e-17 92.8 67 61.2
BcaB07g30139 Brassica carinata HOM05D001104 ORTHO05D006624 1.5e-16 91.7 58 75.9
Cre08.g358552 Chlamydomonas reinhardtii HOM05D001104 ORTHO05D006624 2.6e-16 90.9 506 24.1
SEGI_37884 Sequoiadendron giganteum HOM05D001104 ORTHO05D006624 2.2e-12 77.8 92 40.2
Sopen07g006450 Solanum pennellii HOM05D001104 ORTHO05D006624 8.0e-10 69.3 43 69.8
TPR.G18830 Trifolium pratense HOM05D001104 ORTHO05D006624 4.0e-09 67.0 44 70.5
SEGI_12261 Sequoiadendron giganteum HOM05D001104 ORTHO05D006624 1.7e-07 61.6 58 53.4


User provided reference genes

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