Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0039701 Camellia sinensis var. sinensis HOM05D004148 ORTHO05D004709 1.9e-245 852.0 424 100.0
CSS0039756 Camellia sinensis var. sinensis HOM05D004148 ORTHO05D004709 1.1e-229 799.7 424 95.0
Rhsim13G0199700 Rhododendron simsii HOM05D004148 ORTHO05D004709 4.5e-170 601.7 470 68.3
Dinv32838 Davidia involucrata HOM05D004148 ORTHO05D004709 1.7e-169 599.7 467 68.5
Actinidia12896 Actinidia chinensis HOM05D001400 ORTHO05D001795 2.3e-158 562.8 461 66.6
Cfa010235 Carpinus fangiana HOM05D004148 ORTHO05D004709 9.6e-157 557.4 469 63.3
Haze_23628 Corylus avellana HOM05D004148 ORTHO05D004709 3.7e-156 555.4 467 63.6
Prupe.6G151400 Prunus persica HOM05D004148 ORTHO05D004709 1.3e-150 537.0 453 63.1
Lj2A891G11 Lonicera japonica HOM05D004148 ORTHO05D004709 6.7e-150 534.6 473 61.3
Atru.chr3.3014 Acer truncatum HOM05D004148 ORTHO05D004709 1.5e-149 533.5 466 60.5
TAR623G1397 Trochodendron aralioides HOM05D004148 ORTHO05D004709 2.8e-148 529.3 468 60.9
Thecc.09G266000 Theobroma cacao HOM05D004148 ORTHO05D004709 5.3e-147 525.0 472 60.2
MD03G1162400 Malus domestica HOM05D004148 ORTHO05D004709 2.6e-146 522.7 453 61.6
Ciclev10027694m.g Citrus clementina HOM05D004148 ORTHO05D004709 5.0e-145 518.5 453 61.4
Gohir.A05G076400 Gossypium hirsutum HOM05D004148 ORTHO05D004709 2.5e-144 516.2 477 59.7
GSVIVG01022379001 Vitis vinifera HOM05D004148 ORTHO05D004709 2.5e-144 516.2 455 60.7
Gohir.D05G079200 Gossypium hirsutum HOM05D004148 ORTHO05D004709 4.2e-144 515.4 473 59.0
Gorai.009G080700 Gossypium raimondii HOM05D004148 ORTHO05D004709 2.7e-143 512.7 473 59.0
MD11G1178600 Malus domestica HOM05D004148 ORTHO05D004709 3.9e-142 508.8 453 61.1
Nn2g14486 Nelumbo nucifera HOM05D004148 ORTHO05D004709 1.1e-141 507.3 478 57.9
QL01p018674 Quercus lobata HOM05D004148 ORTHO05D004709 7.4e-141 504.6 458 60.0
RcHm_v2.0_Chr5g0049541 Rosa chinensis HOM05D004148 ORTHO05D004709 6.9e-139 498.0 450 60.2
FAN12G2472 Fragaria x ananassa HOM05D004148 ORTHO05D004709 7.7e-138 494.6 445 60.4
CANSAT54G2785 Cannabis sativa HOM05D004148 ORTHO05D004709 1.7e-137 493.4 469 59.3
FvH4_4g33990 Fragaria vesca HOM05D004148 ORTHO05D004709 2.2e-137 493.0 445 60.2
FAN17G2621 Fragaria x ananassa HOM05D004148 ORTHO05D004709 2.2e-137 493.0 445 60.0
FAN22G0787 Fragaria x ananassa HOM05D004148 ORTHO05D004709 1.9e-136 490.0 445 59.8
TWI60G0836 Tripterygium wilfordii HOM05D004148 ORTHO05D004709 1.8e-134 483.4 472 56.1
Hma1.2p1_0218F.1_g092390 Hydrangea macrophylla HOM05D004148 ORTHO05D004709 3.9e-134 482.3 622 48.1
Lsat_1_v5_gn_5_75780 Lactuca sativa HOM05D004148 ORTHO05D004709 3.3e-133 479.2 445 58.9
CsaV3_3G017640 Cucumis sativus L. HOM05D004148 ORTHO05D004709 6.3e-132 474.9 473 54.3
MELO3C020298.2 Cucumis melo HOM05D004148 ORTHO05D004709 4.1e-131 472.2 473 54.1
ClCG05G010880 Citrullus lanatus HOM05D004148 ORTHO05D004709 1.2e-130 470.7 476 54.4
PGR102G2778 Punica granatum HOM05D004148 ORTHO05D004709 4.5e-130 468.8 473 54.8
Potri.009G153300 Populus trichocarpa HOM05D004148 ORTHO05D004709 5.9e-130 468.4 454 57.5
Cpa.g.sc103.97 Carica papaya HOM05D004148 ORTHO05D004709 2.2e-129 466.5 467 55.9
Sed0012220 Sechium edule HOM05D004148 ORTHO05D004709 5.0e-129 465.3 474 53.4
HanXRQChr03g0089821 Helianthus annuus HOM05D004148 ORTHO05D004709 1.6e-127 460.3 457 54.7
PSO339G2294 Papaver somniferum HOM05D004148 ORTHO05D004709 1.6e-127 460.3 478 53.6
VMungo1215G0285 Vigna mungo HOM05D004148 ORTHO05D004709 3.6e-127 459.1 467 52.9
EL10Ac7g16248 Beta vulgaris HOM05D004148 ORTHO05D004709 2.3e-126 456.4 475 53.9
PSO384G5014 Papaver somniferum HOM05D004148 ORTHO05D004709 3.3e-125 452.6 478 52.9
Lj1g0011831 Lotus japonicus HOM05D004148 ORTHO05D004709 4.4e-125 452.2 456 54.8
AUR62020189 Chenopodium quinoa HOM05D004148 ORTHO05D004709 1.3e-124 450.7 473 51.6
Cc00_g06190 Coffea canephora HOM05D004148 ORTHO05D004709 2.2e-124 449.9 457 54.5
arahy.Tifrunner.gnm1.ann1.SF9HJV Arachis hypogaea HOM05D004148 ORTHO05D004709 4.8e-124 448.7 461 52.5
Hund18819 Selenicereus undatus HOM05D004148 ORTHO05D004709 4.8e-124 448.7 468 52.1
Phvul.002G053700 Phaseolus vulgaris HOM05D004148 ORTHO05D004709 6.3e-124 448.4 465 52.0
Ah.15g099170 Amaranthus hybridus HOM05D004148 ORTHO05D004709 5.3e-123 445.3 471 51.8
Eucgr.B03795 Eucalyptus grandis HOM05D004148 ORTHO05D004709 2.0e-122 443.4 476 51.5
Sc06g0008560 Simmondsia chinensis HOM05D004148 ORTHO05D004709 7.7e-122 441.4 474 51.1
Aqoxy1G00551 Aquilegia oxysepala HOM05D004148 ORTHO05D004709 5.0e-121 438.7 458 51.5
Nitab4.5_0000615g0090 Nicotiana tabacum HOM05D004148 ORTHO05D004709 8.5e-121 438.0 456 51.1
Nitab4.5_0005222g0040 Nicotiana tabacum HOM05D004148 ORTHO05D004709 5.5e-120 435.3 457 51.4
Oeu048810.1 Olea europaea HOM05D004148 ORTHO05D004709 7.2e-120 434.9 449 53.7
Glyma.01G244400 Glycine max HOM05D004148 ORTHO05D004709 1.0e-118 431.0 442 53.8
CARHR108980 Cardamine hirsuta HOM05D004148 ORTHO05D004709 5.2e-118 428.7 451 51.9
Solyc11g071570.3 Solanum lycopersicum HOM05D004148 ORTHO05D004709 5.2e-118 428.7 455 52.1
ECA233G2337 Erigeron canadensis HOM05D004148 ORTHO05D004709 8.8e-118 427.9 472 53.2
Sopen11g029250 Solanum pennellii HOM05D004148 ORTHO05D004709 8.8e-118 427.9 456 51.8
Migut.D00721 Erythranthe guttata HOM05D004148 ORTHO05D004709 2.0e-117 426.8 459 51.9
Peaxi162Scf00217g00627 Petunia axillaris HOM05D004148 ORTHO05D004709 1.8e-115 420.2 454 51.5
CAN.G439.18 Capsicum annuum HOM05D004148 ORTHO05D004709 9.1e-115 417.9 455 51.2
THA.LOC104815063 Tarenaya hassleriana HOM05D004148 ORTHO05D004709 2.7e-114 416.4 477 49.9
BcaC01g02217 Brassica carinata HOM05D004148 ORTHO05D004709 1.9e-112 410.2 450 51.3
BolSC21t60233H Brassica oleracea HOM05D004148 ORTHO05D004709 1.6e-111 407.1 450 50.9
BcaB02g10777 Brassica carinata HOM05D004148 ORTHO05D004709 4.0e-110 402.5 454 50.9
Psat4g228400 Pisum sativum HOM05D004148 ORTHO05D004709 4.0e-110 402.5 442 51.8
AT3G43610 Arabidopsis thaliana HOM05D004148 ORTHO05D004709 6.8e-110 401.7 454 50.0
Carub.0005s0948 Capsella rubella HOM05D004148 ORTHO05D004709 6.8e-110 401.7 461 50.1
SalBow6G3333 Salvia bowleyana HOM05D004148 ORTHO05D004709 6.8e-110 401.7 459 51.0
Sp5g17550 Schrenkiella parvula HOM05D004148 ORTHO05D004709 6.8e-110 401.7 469 48.6
AL5G21540 Arabidopsis lyrata HOM05D004148 ORTHO05D004709 8.8e-110 401.4 465 49.7
MSTRG.21311 Avicennia marina HOM05D004148 ORTHO05D004709 1.2e-109 401.0 449 49.9
Aa31LG4G13420 Aethionema arabicum HOM05D004148 ORTHO05D004709 1.5e-109 400.6 475 48.4
Thhalv10002374m.g Eutrema salsugineum HOM05D004148 ORTHO05D004709 4.1e-107 392.5 455 48.6
BolC3t19498H Brassica oleracea HOM05D004148 ORTHO05D004709 2.3e-105 386.7 449 48.8
BraA06t25067Z Brassica rapa HOM05D004148 ORTHO05D004709 2.3e-105 386.7 453 49.0
C03p72000 Brassica napus HOM05D004148 ORTHO05D004709 2.9e-105 386.3 467 48.2
A06p19850 Brassica napus HOM05D004148 ORTHO05D004709 3.8e-105 386.0 466 47.2
BcaC01g01775 Brassica carinata HOM05D004148 ORTHO05D004709 8.6e-105 384.8 467 47.8
Medtr5g004880 Medicago truncatula HOM05D004148 ORTHO05D004709 1.4e-99 367.5 437 50.3
DCAR_012264 Daucus carota HOM05D000495 ORTHO05D000357 7.0e-99 365.2 406 53.7
arahy.Tifrunner.gnm1.ann1.J94639 Arachis hypogaea HOM05D004148 ORTHO05D004709 3.8e-97 359.4 439 47.2
SGA_v2.0_scaffold29G12109 Striga asiatica HOM05D004148 ORTHO05D004709 6.6e-97 358.6 489 45.0
ATR0697G020 Amborella trichopoda HOM05D004148 ORTHO05D004709 9.5e-96 354.8 510 42.2
CDE07G1769 Ceratophyllum demersum HOM05D004148 ORTHO05D004709 3.1e-94 349.7 455 46.8
vmacro04063 Vaccinium macrocarpon HOM05D004148 ORTHO05D004709 5.2e-94 349.0 315 62.9
Lalb_Chr16g0376251 Lupinus albus HOM05D004148 ORTHO05D004709 6.4e-92 342.0 434 47.0
HPP92_019532 Vanilla planifolia HOM05D004148 ORTHO05D004709 2.4e-91 340.1 471 43.9
Hma1.2p1_2711F.1_g327330 Hydrangea macrophylla HOM05D004148 ORTHO05D004709 7.8e-90 335.1 456 45.0
MBI11_g07705_MAGBIO Magnolia biondii HOM05D004148 ORTHO05D004709 4.7e-87 325.9 382 50.3
Zm00001eb073760 Zea mays HOM05D004148 ORTHO05D004709 2.6e-85 320.1 470 40.4
COL.COLO4_25330 Corchorus olitorius HOM05D004148 ORTHO05D004709 3.7e-76 289.7 297 55.6
BcaB01g00875 Brassica carinata HOM05D004148 ORTHO05D004709 2.3e-73 280.4 307 49.8
Carub.0005s0934 Capsella rubella HOM05D004148 ORTHO05D004709 3.1e-62 243.4 307 49.2
Duzib168G1551 Durio zibethinus HOM05D004148 ORTHO05D004709 2.4e-59 233.8 179 63.1
FvH4_3g27031 Fragaria vesca HOM05D004148 ORTHO05D004709 7.1e-59 232.3 280 46.8
Manes.04G054800 Manihot esculenta HOM05D004148 ORTHO05D004709 5.1e-57 226.1 209 56.9
unitig_21.g20312 Utricularia gibba HOM05D004148 ORTHO05D004709 3.6e-55 219.9 311 44.4
Ca_24340_v3 Cicer arietinum L. HOM05D004148 ORTHO05D004709 2.4e-54 217.2 175 62.3
A06p26680 Brassica napus HOM05D004148 ORTHO05D004709 3.8e-52 209.9 197 53.3
Os04g0566900 Oryza sativa ssp. japonica HOM05D004148 ORTHO05D004709 4.0e-46 189.9 293 41.3
SHI25296 Sapria himalayana HOM05D004148 ORTHO05D004709 2.0e-45 187.6 217 53.0
Mapoly0099s0003 Marchantia polymorpha HOM05D004148 ORTHO05D004709 6.0e-42 176.0 491 29.9
FAN16G3212 Fragaria x ananassa HOM05D004148 ORTHO05D004709 1.8e-41 174.5 133 63.2
SHI25295 Sapria himalayana HOM05D004148 ORTHO05D004709 1.1e-40 171.8 179 47.5
AagrBONN_evm.TU.Sc2ySwM_228.375 Anthoceros agrestis HOM05D004148 ORTHO05D004709 1.6e-34 151.4 472 29.4
Pp3c11_24620 Physcomitrium patens HOM05D004148 ORTHO05D004709 4.6e-34 149.8 256 35.5
vmacro04062 Vaccinium macrocarpon HOM05D004148 ORTHO05D004709 1.8e-33 147.9 105 71.4
BolC8t48007H Brassica oleracea HOM05D004148 ORTHO05D004709 3.1e-30 137.1 179 49.2
SEGI_35526 Sequoiadendron giganteum HOM05D004148 ORTHO05D004709 5.9e-29 132.9 284 36.3
Psat6g175800 Pisum sativum HOM05D004148 ORTHO05D004709 2.2e-28 131.0 131 50.4
SEGI_18042 Sequoiadendron giganteum HOM05D004148 ORTHO05D004709 1.4e-27 128.3 191 39.3
Zm00001eb428880 Zea mays HOM05D004148 ORTHO05D004709 2.5e-24 117.5 448 24.8
CBR_g23077 Chara braunii HOM05D004148 ORTHO05D004709 9.7e-24 115.5 347 28.5
CARHR148440 Cardamine hirsuta HOM05D004148 ORTHO05D004709 1.8e-22 111.3 119 51.3
C05p34090 Brassica napus HOM05D004148 ORTHO05D004709 4.1e-22 110.2 121 53.7
BraA06t25600Z Brassica rapa HOM05D004148 ORTHO05D004709 4.5e-21 106.7 96 57.3
Psat6g091080 Pisum sativum HOM05D004333 ORTHO05D005363 2.5e-19 100.9 104 51.0
A08p06640 Brassica napus HOM05D004148 ORTHO05D004709 1.2e-18 98.6 117 51.3
BraA07t28462Z Brassica rapa HOM05D004148 ORTHO05D004709 1.0e-17 95.5 116 51.7
BraA05t21194Z Brassica rapa HOM05D004148 ORTHO05D004709 1.2e-13 82.0 117 47.9
A08p03240 Brassica napus HOM05D004148 ORTHO05D004709 2.6e-13 80.9 116 45.7
A09p33570 Brassica napus HOM05D004148 ORTHO05D004709 2.9e-12 77.4 114 44.7
A10p16420 Brassica napus HOM05D004148 ORTHO05D004709 2.9e-12 77.4 114 44.7
C06p15540 Brassica napus HOM05D004148 ORTHO05D004709 2.9e-12 77.4 114 44.7
C08p23060 Brassica napus HOM05D004148 ORTHO05D004709 2.9e-12 77.4 114 44.7
A05p23300 Brassica napus HOM05D004148 ORTHO05D004709 2.1e-10 71.2 116 42.2


User provided reference genes

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