Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0039600 Camellia sinensis var. sinensis HOM05D005643 ORTHO05D006819 1.3e-134 483.0 238 100.0
Dinv32759 Davidia involucrata HOM05D005643 ORTHO05D006819 2.8e-89 332.4 256 69.5
Rhsim13G0093700 Rhododendron simsii HOM05D005643 ORTHO05D006819 2.4e-88 329.3 256 69.9
Prupe.6G100100 Prunus persica HOM05D005643 ORTHO05D006819 3.8e-86 322.0 254 67.7
TAR633G1751 Trochodendron aralioides HOM05D005643 ORTHO05D006819 3.6e-84 315.5 257 65.0
Ciclev10029093m.g Citrus clementina HOM05D005643 ORTHO05D006819 4.0e-83 312.0 264 63.6
Atru.chr3.3643 Acer truncatum HOM05D005643 ORTHO05D006819 4.8e-81 305.1 258 64.7
Cfa011331 Carpinus fangiana HOM05D005643 ORTHO05D006819 4.8e-81 305.1 255 65.5
QL01p022418 Quercus lobata HOM05D005643 ORTHO05D006819 4.8e-81 305.1 253 65.2
Gohir.D05G076900 Gossypium hirsutum HOM05D005643 ORTHO05D006819 1.4e-80 303.5 255 64.3
Gorai.009G078300 Gossypium raimondii HOM05D005643 ORTHO05D006819 1.4e-80 303.5 255 64.3
Cc01_g11250 Coffea canephora HOM05D005643 ORTHO05D006819 3.1e-80 302.4 256 63.7
arahy.Tifrunner.gnm1.ann1.X5NJ7E Arachis hypogaea HOM05D005643 ORTHO05D006819 5.3e-80 301.6 256 61.3
Gohir.A05G074000 Gossypium hirsutum HOM05D005643 ORTHO05D006819 7.0e-80 301.2 255 63.9
Eucgr.B02489 Eucalyptus grandis HOM05D005643 ORTHO05D006819 1.2e-79 300.4 257 63.8
Oeu059095.1 Olea europaea HOM05D005643 ORTHO05D006819 2.0e-79 299.7 256 63.7
Lj1A190T89 Lonicera japonica HOM05D005643 ORTHO05D006819 3.5e-79 298.9 256 63.7
Nitab4.5_0006757g0010 Nicotiana tabacum HOM05D005643 ORTHO05D006819 3.5e-79 298.9 256 61.3
Manes.04G022200 Manihot esculenta HOM05D005643 ORTHO05D006819 5.9e-79 298.1 256 61.7
Sabra09G0008500 Salix brachista HOM05D005643 ORTHO05D006819 5.9e-79 298.1 256 62.1
CiPaw.13G111900 Carya illinoinensis HOM05D005643 ORTHO05D006819 7.7e-79 297.7 255 65.1
CAN.G1001.26 Capsicum annuum HOM05D005643 ORTHO05D006819 1.0e-78 297.4 256 62.1
TPR.G13337 Trifolium pratense HOM05D005643 ORTHO05D006819 1.0e-78 297.4 254 63.4
FvH4_3g32570 Fragaria vesca HOM05D005643 ORTHO05D006819 1.3e-78 297.0 251 61.4
Peaxi162Scf00270g00108 Petunia axillaris HOM05D005643 ORTHO05D006819 3.8e-78 295.4 256 62.5
Migut.D02214 Erythranthe guttata HOM05D005643 ORTHO05D006819 8.5e-78 294.3 254 62.6
TWI79G0673 Tripterygium wilfordii HOM05D005643 ORTHO05D006819 8.5e-78 294.3 257 63.0
Migut.D02210 Erythranthe guttata HOM05D005643 ORTHO05D006819 1.1e-77 293.9 254 62.6
Thecc.09G257100 Theobroma cacao HOM05D005643 ORTHO05D006819 1.9e-77 293.1 255 61.6
Potri.009G012700 Populus trichocarpa HOM05D005643 ORTHO05D006819 2.5e-77 292.7 257 61.5
MSTRG.21131 Avicennia marina HOM05D005643 ORTHO05D006819 3.2e-77 292.4 255 61.2
Lalb_Chr19g0124481 Lupinus albus HOM05D005643 ORTHO05D006819 4.2e-77 292.0 254 59.8
FAN11G2689 Fragaria x ananassa HOM05D005643 ORTHO05D006819 7.2e-77 291.2 256 60.2
Medtr4g015590 Medicago truncatula HOM05D005643 ORTHO05D006819 1.6e-76 290.0 254 61.0
Sopen11g028020 Solanum pennellii HOM05D005643 ORTHO05D006819 2.1e-76 289.7 256 60.5
GSVIVG01025172001 Vitis vinifera HOM05D005643 ORTHO05D006819 2.1e-76 289.7 257 63.0
Solyc11g069290.2 Solanum lycopersicum HOM05D005643 ORTHO05D006819 2.7e-76 289.3 256 60.5
TWI75G1433 Tripterygium wilfordii HOM05D005643 ORTHO05D006819 2.7e-76 289.3 256 60.9
PGSC0003DMG400008060 Solanum tuberosum HOM05D005643 ORTHO05D006819 4.7e-76 288.5 256 59.8
Phvul.010G001900 Phaseolus vulgaris HOM05D005643 ORTHO05D006819 8.0e-76 287.7 255 60.8
ECA248G1947 Erigeron canadensis HOM05D005643 ORTHO05D006819 1.4e-75 287.0 261 60.9
Nn2g10757 Nelumbo nucifera HOM05D005643 ORTHO05D006819 1.4e-75 287.0 257 61.9
Duzib150G0959 Durio zibethinus HOM05D005643 ORTHO05D006819 1.8e-75 286.6 255 62.4
Nitab4.5_0000650g0110 Nicotiana tabacum HOM05D005643 ORTHO05D006819 1.8e-75 286.6 275 57.8
SalBow5G2340 Salvia bowleyana HOM05D005643 ORTHO05D006819 1.8e-75 286.6 255 60.4
Glyma.01G116100 Glycine max HOM05D005643 ORTHO05D006819 6.8e-75 284.6 260 58.8
HanXRQChr01g0018371 Helianthus annuus HOM05D005643 ORTHO05D006819 6.8e-75 284.6 262 58.8
AT5G60540 Arabidopsis thaliana HOM05D005643 ORTHO05D006819 8.8e-75 284.3 260 60.4
MD11G1133800 Malus domestica HOM05D005643 ORTHO05D006819 8.8e-75 284.3 272 59.9
THA.LOC104814830 Tarenaya hassleriana HOM05D005643 ORTHO05D006819 8.8e-75 284.3 259 61.0
Duzib170G0435 Durio zibethinus HOM05D005643 ORTHO05D006819 1.5e-74 283.5 253 61.3
Duzib170G0739 Durio zibethinus HOM05D005643 ORTHO05D006819 1.5e-74 283.5 253 61.3
Lj3g0018588 Lotus japonicus HOM05D005643 ORTHO05D006819 1.5e-74 283.5 253 58.5
RcHm_v2.0_Chr5g0059641 Rosa chinensis HOM05D005643 ORTHO05D006819 2.0e-74 283.1 265 57.4
SGA_v2.0_scaffold97G29210 Striga asiatica HOM05D005643 ORTHO05D006819 2.0e-74 283.1 255 59.6
Aqoxy1G03172 Aquilegia oxysepala HOM05D005643 ORTHO05D006819 2.6e-74 282.7 253 60.9
AL8G37130 Arabidopsis lyrata HOM05D005643 ORTHO05D006819 2.6e-74 282.7 260 59.6
FAN21G1883 Fragaria x ananassa HOM05D005643 ORTHO05D006819 3.4e-74 282.3 269 57.6
arahy.Tifrunner.gnm1.ann1.9U2L6D Arachis hypogaea HOM05D005643 ORTHO05D006819 7.5e-74 281.2 253 59.7
CAN.G631.16 Capsicum annuum HOM05D005643 ORTHO05D006819 7.5e-74 281.2 256 59.8
Glyma.03G060100 Glycine max HOM05D005643 ORTHO05D006819 7.5e-74 281.2 256 57.8
Psat7g245880 Pisum sativum HOM05D005643 ORTHO05D006819 7.5e-74 281.2 257 60.7
FAN16G3648 Fragaria x ananassa HOM05D005643 ORTHO05D006819 9.8e-74 280.8 256 59.0
Carub.0008s2123 Capsella rubella HOM05D005643 ORTHO05D006819 1.3e-73 280.4 260 59.2
Sed0015117 Sechium edule HOM05D005643 ORTHO05D006819 2.2e-73 279.6 252 61.1
arahy.Tifrunner.gnm1.ann1.QSC7KM Arachis hypogaea HOM05D005643 ORTHO05D006819 8.3e-73 277.7 306 51.6
Lalb_Chr03g0043331 Lupinus albus HOM05D005643 ORTHO05D006819 1.1e-72 277.3 241 59.3
Aa31LG1G12530 Aethionema arabicum HOM05D005643 ORTHO05D006819 3.1e-72 275.8 256 59.4
Sc06g0010070 Simmondsia chinensis HOM05D005643 ORTHO05D006819 3.1e-72 275.8 255 58.0
DCAR_006056 Daucus carota HOM05D005643 ORTHO05D006819 5.4e-72 275.0 257 60.3
BcaB08g36348 Brassica carinata HOM05D005643 ORTHO05D006819 9.1e-72 274.2 260 58.8
C09p53180 Brassica napus HOM05D005643 ORTHO05D006819 1.2e-71 273.9 260 58.5
BolC9t58193H Brassica oleracea HOM05D005643 ORTHO05D006819 1.2e-71 273.9 260 58.5
Sp6g22110 Schrenkiella parvula HOM05D005643 ORTHO05D006819 1.2e-71 273.9 259 59.1
MELO3C025766.2 Cucumis melo HOM05D005643 ORTHO05D006819 2.0e-71 273.1 251 59.8
A10p17720 Brassica napus HOM05D005643 ORTHO05D006819 2.7e-71 272.7 260 58.8
BraA10t43851Z Brassica rapa HOM05D005643 ORTHO05D006819 2.7e-71 272.7 260 58.8
PGR102G1730 Punica granatum HOM05D005643 ORTHO05D006819 5.9e-71 271.6 258 58.9
unitig_0.g1517 Utricularia gibba HOM05D005643 ORTHO05D006819 5.9e-71 271.6 254 59.4
PSO384G4957 Papaver somniferum HOM05D005643 ORTHO05D006819 1.3e-70 270.4 258 57.0
PSO339G3071 Papaver somniferum HOM05D005643 ORTHO05D006819 1.7e-70 270.0 258 57.0
CARHR274200 Cardamine hirsuta HOM05D005643 ORTHO05D006819 5.0e-70 268.5 260 56.9
Actinidia03737 Actinidia chinensis HOM05D005643 ORTHO05D006819 6.6e-70 268.1 197 71.6
BolC2t07247H Brassica oleracea HOM05D005643 ORTHO05D006819 6.6e-70 268.1 259 57.5
Hma1.2p1_1030F.1_g249820 Hydrangea macrophylla HOM05D005643 ORTHO05D006819 2.5e-69 266.2 240 60.0
MBI07_g41453_MAGBIO Magnolia biondii HOM05D005643 ORTHO05D006819 2.5e-69 266.2 241 60.2
ATR0115G033 Amborella trichopoda HOM05D005643 ORTHO05D006819 7.2e-69 264.6 257 56.8
VMungo0331G1810 Vigna mungo HOM05D005643 ORTHO05D006819 1.6e-68 263.5 242 57.9
CsaV3_6G013840 Cucumis sativus L. HOM05D005643 ORTHO05D006819 2.1e-68 263.1 251 58.6
AUR62039626 Chenopodium quinoa HOM05D005643 ORTHO05D006819 2.8e-68 262.7 263 55.5
AUR62024993 Chenopodium quinoa HOM05D005643 ORTHO05D006819 4.7e-68 261.9 263 54.4
EL10Ac9g22501 Beta vulgaris HOM05D005643 ORTHO05D006819 3.0e-67 259.2 222 61.3
Lsat_1_v5_gn_1_65480 Lactuca sativa HOM05D005643 ORTHO05D006819 4.0e-67 258.8 251 56.6
HPP92_025849 Vanilla planifolia HOM05D005643 ORTHO05D006819 4.0e-67 258.8 255 54.9
Os02g0130100 Oryza sativa ssp. japonica HOM05D005643 ORTHO05D006819 3.7e-65 252.3 259 54.4
SEGI_15740 Sequoiadendron giganteum HOM05D005643 ORTHO05D006819 6.3e-65 251.5 256 54.3
Thhalv10014160m.g Eutrema salsugineum HOM05D005643 ORTHO05D006819 2.4e-64 249.6 255 56.5
MD03G1113000 Malus domestica HOM05D005643 ORTHO05D006819 7.0e-64 248.1 246 58.1
AagrBONN_evm.TU.Sc2ySwM_117.2790 Anthoceros agrestis HOM05D005643 ORTHO05D006819 7.8e-63 244.6 255 52.2
Actinidia24093 Actinidia chinensis HOM05D005643 ORTHO05D006819 3.3e-61 239.2 205 63.4
BcaB08g36349 Brassica carinata HOM05D005643 ORTHO05D006819 1.0e-59 234.2 244 54.9
Pp3c19_5510 Physcomitrium patens HOM05D005643 ORTHO05D006819 5.8e-58 228.4 260 51.2
Mapoly0081s0077 Marchantia polymorpha HOM05D005643 ORTHO05D006819 2.2e-57 226.5 257 51.4
Oeu002854.1 Olea europaea HOM05D005643 ORTHO05D006819 2.7e-55 219.5 203 61.1
vmacro03191 Vaccinium macrocarpon HOM05D005643 ORTHO05D006819 3.5e-55 219.2 257 52.1
SMO364G0700 Selaginella moellendorffii HOM05D005643 ORTHO05D006819 1.3e-54 217.2 259 48.3
Nn2g13073 Nelumbo nucifera HOM05D001952 ORTHO05D005047 6.2e-52 208.4 233 51.5
C02p11600 Brassica napus HOM05D005643 ORTHO05D006819 1.2e-50 204.1 199 55.8
Pp3c18_20140 Physcomitrium patens HOM05D005643 ORTHO05D006819 5.8e-50 201.8 229 50.2
arahy.Tifrunner.gnm1.ann1.J7FTHV Arachis hypogaea HOM05D005643 ORTHO05D006819 2.9e-49 199.5 238 50.4
Ca_09130_v3 Cicer arietinum L. HOM05D005643 ORTHO05D006819 3.7e-49 199.1 184 56.5
CBR_g31179 Chara braunii HOM05D005643 ORTHO05D006819 2.7e-47 193.0 261 44.1
Zm00001eb208970 Zea mays HOM05D005643 ORTHO05D006819 6.0e-47 191.8 164 61.6
MBI07_g42630_MAGBIO Magnolia biondii HOM05D005643 ORTHO05D006819 3.6e-44 182.6 216 51.9
BcaC04g19711 Brassica carinata HOM05D005643 ORTHO05D006819 8.1e-44 181.4 243 47.7
MD03G1113200 Malus domestica HOM05D005643 ORTHO05D006819 8.9e-43 177.9 181 55.2
Cre03.g167051 Chlamydomonas reinhardtii HOM05D005643 ORTHO05D006819 2.0e-42 176.8 232 44.0
Lj2A1030T57 Lonicera japonica HOM05D005643 ORTHO05D006819 2.2e-41 173.3 118 74.6
MCO05G014 Micromonas commoda HOM05D005643 ORTHO05D006819 1.0e-38 164.5 258 42.6
Haze_23864 Corylus avellana HOM05D005643 ORTHO05D006819 7.6e-34 148.3 123 66.7
CiPaw.13G111500 Carya illinoinensis HOM05D005643 ORTHO05D006819 1.6e-31 140.6 123 64.2
Oeu002855.1 Olea europaea HOM05D005643 ORTHO05D006819 2.1e-31 140.2 149 55.7
BcaC03g13961 Brassica carinata HOM05D005643 ORTHO05D006819 7.8e-31 138.3 129 56.6
TAR636G3455 Trochodendron aralioides HOM05D005643 ORTHO05D006819 1.3e-25 120.9 95 62.1
Cfa022863 Carpinus fangiana HOM05D005643 ORTHO05D006819 1.9e-24 117.1 267 34.1
Dinv12496 Davidia involucrata HOM05D005643 ORTHO05D006819 7.3e-21 105.1 75 73.3
Lj2A1030T58 Lonicera japonica HOM05D005643 ORTHO05D006819 6.2e-20 102.1 70 71.4
Cpa.g.sc216.17 Carica papaya HOM05D005643 ORTHO05D006819 1.1e-19 101.3 54 87.0
BraA02t05718Z Brassica rapa HOM05D005643 ORTHO05D006819 1.8e-19 100.5 54 83.3
TAR636G0837 Trochodendron aralioides HOM05D005643 ORTHO05D006819 5.3e-19 99.0 78 69.2
Rhsim06G0101300 Rhododendron simsii HOM05D005643 ORTHO05D006819 9.0e-19 98.2 88 60.2
SHI06095 Sapria himalayana HOM05D005643 ORTHO05D006819 1.1e-16 91.3 55 72.7
Cpa.g.sc216.18 Carica papaya HOM05D005643 ORTHO05D006819 1.6e-15 87.4 71 67.6
SHI06096 Sapria himalayana HOM05D005643 ORTHO05D006819 1.3e-14 84.3 97 50.5
Rhsim13G0093600 Rhododendron simsii HOM05D000699 ORTHO05D000519 1.5e-10 70.9 50 70.0
TAR005G0002 Trochodendron aralioides HOM05D005643 ORTHO05D006819 2.9e-09 66.6 72 55.6
ClCG02G021090 Citrullus lanatus HOM05D005643 ORTHO05D006819 6.4e-09 65.5 57 64.9
CAN.G129.52 Capsicum annuum HOM05D001089 ORTHO05D000920 6.7e-06 55.5 30 80.0


User provided reference genes

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