Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0039444 Camellia sinensis var. sinensis HOM05D006377 ORTHO05D008001 3.0e-105 385.2 196 100.0
CSS0017897 Camellia sinensis var. sinensis HOM05D006377 ORTHO05D008001 1.7e-103 379.4 196 96.4
TAR365G0273 Trochodendron aralioides HOM05D006377 ORTHO05D008001 5.2e-73 278.1 205 74.1
Prupe.6G338600 Prunus persica HOM05D006377 ORTHO05D008001 2.0e-72 276.2 214 72.9
vmacro05068 Vaccinium macrocarpon HOM05D006377 ORTHO05D008001 2.6e-72 275.8 216 72.2
Actinidia05760 Actinidia chinensis HOM05D006377 ORTHO05D008001 2.9e-71 272.3 206 71.8
MD12G1236300 Malus domestica HOM05D006377 ORTHO05D008001 1.0e-68 263.8 207 70.5
Nn2g12517 Nelumbo nucifera HOM05D006377 ORTHO05D008001 2.3e-68 262.7 202 70.3
Rhsim07G0175800 Rhododendron simsii HOM05D006377 ORTHO05D008001 4.3e-67 258.5 207 68.6
CiPaw.08G178700 Carya illinoinensis HOM05D006377 ORTHO05D008001 5.6e-67 258.1 200 70.5
RcHm_v2.0_Chr3g0452211 Rosa chinensis HOM05D006377 ORTHO05D008001 7.3e-67 257.7 200 68.5
Nitab4.5_0002361g0100 Nicotiana tabacum HOM05D006377 ORTHO05D008001 9.5e-67 257.3 208 69.7
Haze_04319 Corylus avellana HOM05D006377 ORTHO05D008001 1.6e-66 256.5 197 70.1
Sopen01g041500 Solanum pennellii HOM05D006377 ORTHO05D008001 2.8e-66 255.8 208 68.3
QL03p023258 Quercus lobata HOM05D006377 ORTHO05D008001 3.6e-66 255.4 199 68.3
Actinidia30919 Actinidia chinensis HOM05D006377 ORTHO05D008001 6.2e-66 254.6 176 76.7
PGSC0003DMG400022504 Solanum tuberosum HOM05D006377 ORTHO05D008001 6.2e-66 254.6 208 69.2
Nitab4.5_0002840g0030 Nicotiana tabacum HOM05D006377 ORTHO05D008001 8.1e-66 254.2 208 69.2
FvH4_6g03680 Fragaria vesca HOM05D006377 ORTHO05D008001 1.1e-65 253.8 201 68.7
EL10Ac4g09192 Beta vulgaris HOM05D006377 ORTHO05D008001 1.4e-65 253.4 205 67.8
FAN05G1987 Fragaria x ananassa HOM05D006377 ORTHO05D008001 1.8e-65 253.1 200 68.5
Cfa006472 Carpinus fangiana HOM05D006377 ORTHO05D008001 2.3e-65 252.7 197 69.0
FAN05G4075 Fragaria x ananassa HOM05D006377 ORTHO05D008001 2.3e-65 252.7 200 68.5
FAN14G3144 Fragaria x ananassa HOM05D006377 ORTHO05D008001 2.3e-65 252.7 201 68.2
QL03p023964 Quercus lobata HOM05D006377 ORTHO05D008001 2.3e-65 252.7 199 68.3
Hma1.2p1_0332F.1_g127770 Hydrangea macrophylla HOM05D006377 ORTHO05D008001 3.1e-65 252.3 201 71.1
CAN.G134.174 Capsicum annuum HOM05D006377 ORTHO05D008001 8.9e-65 250.8 203 68.0
Sc20g0000200 Simmondsia chinensis HOM05D006377 ORTHO05D008001 2.0e-64 249.6 201 70.1
Solyc01g097910.2 Solanum lycopersicum HOM05D006377 ORTHO05D008001 7.5e-64 247.7 208 66.8
MD04G1219300 Malus domestica HOM05D006377 ORTHO05D008001 9.9e-64 247.3 220 64.5
MELO3C004358.2 Cucumis melo HOM05D006377 ORTHO05D008001 4.9e-63 245.0 200 67.0
Oeu012478.1 Olea europaea HOM05D006377 ORTHO05D008001 6.4e-63 244.6 199 67.3
Ciclev10002532m.g Citrus clementina HOM05D006377 ORTHO05D008001 1.1e-62 243.8 206 66.5
ECA238G1597 Erigeron canadensis HOM05D006377 ORTHO05D008001 1.1e-62 243.8 204 66.2
Aqoxy2G02484 Aquilegia oxysepala HOM05D006377 ORTHO05D008001 1.4e-62 243.4 218 66.5
Cc02_g31420 Coffea canephora HOM05D006377 ORTHO05D008001 1.4e-62 243.4 212 62.7
ClCG02G016370 Citrullus lanatus HOM05D006377 ORTHO05D008001 2.4e-62 242.7 204 66.2
Duzib177G1058 Durio zibethinus HOM05D006377 ORTHO05D008001 2.4e-62 242.7 212 66.0
Oeu027050.1 Olea europaea HOM05D006377 ORTHO05D008001 2.4e-62 242.7 197 67.0
CsaV3_2G004360 Cucumis sativus L. HOM05D006377 ORTHO05D008001 7.1e-62 241.1 203 65.5
Gohir.A11G256100 Gossypium hirsutum HOM05D006377 ORTHO05D008001 1.2e-61 240.4 214 63.6
Gohir.D11G265800 Gossypium hirsutum HOM05D006377 ORTHO05D008001 1.2e-61 240.4 213 64.3
Lj7P475T32 Lonicera japonica HOM05D006377 ORTHO05D008001 1.2e-61 240.4 198 66.2
Lsat_1_v5_gn_2_67840 Lactuca sativa HOM05D006377 ORTHO05D008001 1.6e-61 240.0 191 68.6
Gorai.007G285800 Gossypium raimondii HOM05D006377 ORTHO05D008001 2.7e-61 239.2 213 64.3
TWI36G1766 Tripterygium wilfordii HOM05D006377 ORTHO05D008001 3.5e-61 238.8 202 66.8
FAN09G4008 Fragaria x ananassa HOM05D006377 ORTHO05D008001 1.0e-60 237.3 195 67.2
Peaxi162Scf00404g00014 Petunia axillaris HOM05D006377 ORTHO05D008001 1.0e-60 237.3 201 65.2
PSO210G5336 Papaver somniferum HOM05D006377 ORTHO05D008001 3.9e-60 235.3 204 64.7
PGR004G2824 Punica granatum HOM05D006377 ORTHO05D008001 3.9e-60 235.3 211 63.5
MSTRG.3650 Avicennia marina HOM05D006377 ORTHO05D008001 6.6e-60 234.6 201 63.2
Thecc.05G289700 Theobroma cacao HOM05D006377 ORTHO05D008001 6.6e-60 234.6 210 64.3
Dinv11572 Davidia involucrata HOM05D006377 ORTHO05D008001 1.1e-59 233.8 196 67.3
Sed0019582 Sechium edule HOM05D006377 ORTHO05D008001 4.3e-59 231.9 203 64.0
THA.LOC104805815 Tarenaya hassleriana HOM05D006377 ORTHO05D008001 9.5e-59 230.7 208 60.1
Ah.06g192660 Amaranthus hybridus HOM05D006377 ORTHO05D008001 1.2e-58 230.3 206 65.5
Manes.08G127500 Manihot esculenta HOM05D006377 ORTHO05D008001 1.6e-58 229.9 214 65.4
Potri.005G049000 Populus trichocarpa HOM05D006377 ORTHO05D008001 1.6e-58 229.9 205 66.3
MBI19_g37073_MAGBIO Magnolia biondii HOM05D006377 ORTHO05D008001 4.7e-58 228.4 203 66.0
Lalb_Chr15g0076921 Lupinus albus HOM05D006377 ORTHO05D008001 5.2e-57 224.9 186 65.1
HanXRQChr04g0094091 Helianthus annuus HOM05D006377 ORTHO05D008001 6.8e-57 224.6 195 64.6
Potri.013G035700 Populus trichocarpa HOM05D006377 ORTHO05D008001 2.0e-56 223.0 201 65.2
PSO761G0064 Papaver somniferum HOM05D006377 ORTHO05D008001 3.4e-56 222.2 203 62.1
Atru.chr2.718 Acer truncatum HOM05D006377 ORTHO05D008001 6.4e-55 218.0 151 70.9
VMungo0540G1412 Vigna mungo HOM05D006377 ORTHO05D008001 6.4e-55 218.0 196 63.8
SalBow5G2979 Salvia bowleyana HOM05D006377 ORTHO05D008001 1.4e-54 216.9 206 61.7
Lj1g0014721 Lotus japonicus HOM05D006377 ORTHO05D008001 3.2e-54 215.7 194 59.8
SGA_v2.0_scaffold35G13993 Striga asiatica HOM05D006377 ORTHO05D008001 4.2e-54 215.3 196 60.2
Glyma.03G245100 Glycine max HOM05D006377 ORTHO05D008001 1.6e-53 213.4 196 61.2
CDE01G0680 Ceratophyllum demersum HOM05D000526 ORTHO05D000956 2.1e-53 213.0 195 61.5
Medtr7g114590 Medicago truncatula HOM05D006377 ORTHO05D008001 2.1e-53 213.0 196 61.2
CDE12G0044 Ceratophyllum demersum HOM05D000526 ORTHO05D000956 2.7e-53 212.6 200 60.0
arahy.Tifrunner.gnm1.ann1.VW98FE Arachis hypogaea HOM05D006377 ORTHO05D008001 3.5e-53 212.2 118 83.9
FAN02G4534 Fragaria x ananassa HOM05D006377 ORTHO05D008001 3.5e-53 212.2 161 68.9
Ca_09403_v3 Cicer arietinum L. HOM05D006377 ORTHO05D008001 4.6e-53 211.8 192 60.4
Ca_30164_v3 Cicer arietinum L. HOM05D006377 ORTHO05D008001 4.6e-53 211.8 192 60.4
Migut.E01572 Erythranthe guttata HOM05D006377 ORTHO05D008001 6.0e-53 211.5 197 59.9
TPR.G7004 Trifolium pratense HOM05D006377 ORTHO05D008001 6.0e-53 211.5 194 60.3
Os08g0323400 Oryza sativa ssp. japonica HOM05D006377 ORTHO05D008001 1.0e-52 210.7 180 62.2
Sabra05G0044300 Salix brachista HOM05D006377 ORTHO05D008001 1.0e-52 210.7 199 58.8
Aa31LG2G12300 Aethionema arabicum HOM05D006377 ORTHO05D008001 1.3e-52 210.3 199 56.8
Phvul.006G099300 Phaseolus vulgaris HOM05D006377 ORTHO05D008001 1.3e-52 210.3 196 61.7
unitig_0.g1675 Utricularia gibba HOM05D006377 ORTHO05D008001 2.3e-52 209.5 196 57.7
Cpa.g.sc264.18 Carica papaya HOM05D006377 ORTHO05D008001 3.0e-52 209.1 116 83.6
AUR62000968 Chenopodium quinoa HOM05D006377 ORTHO05D008001 8.7e-52 207.6 193 63.2
CARHR055600 Cardamine hirsuta HOM05D006377 ORTHO05D008001 1.5e-51 206.8 211 58.3
Carub.0002s0934 Capsella rubella HOM05D006377 ORTHO05D008001 1.9e-51 206.5 209 57.4
Duzib128G0229 Durio zibethinus HOM05D006377 ORTHO05D008001 9.6e-51 204.1 172 65.1
Thhalv10023702m.g Eutrema salsugineum HOM05D006377 ORTHO05D008001 1.2e-50 203.8 149 66.4
Zm00001eb061720 Zea mays HOM05D006377 ORTHO05D008001 2.1e-50 203.0 113 81.4
BcaB02g08603 Brassica carinata HOM05D006377 ORTHO05D008001 2.8e-50 202.6 147 68.7
ATR0796G227 Amborella trichopoda HOM05D006377 ORTHO05D008001 4.7e-50 201.8 199 57.3
AL1G64910 Arabidopsis lyrata HOM05D006377 ORTHO05D008001 4.7e-50 201.8 208 58.7
Zm00001eb140200 Zea mays HOM05D006377 ORTHO05D008001 4.7e-50 201.8 152 65.1
BcaC02g09303 Brassica carinata HOM05D006377 ORTHO05D008001 8.1e-50 201.1 124 76.6
A04p07500 Brassica napus HOM05D006377 ORTHO05D008001 8.1e-50 201.1 124 76.6
BraA04t16445Z Brassica rapa HOM05D006377 ORTHO05D008001 8.1e-50 201.1 124 76.6
C04p41160 Brassica napus HOM05D006377 ORTHO05D008001 1.4e-49 200.3 156 65.4
BolC4t25698H Brassica oleracea HOM05D006377 ORTHO05D008001 1.4e-49 200.3 156 65.4
AT1G54500 Arabidopsis thaliana HOM05D006377 ORTHO05D008001 1.8e-49 199.9 206 58.3
Zm00001eb061690 Zea mays HOM05D006377 ORTHO05D008001 1.8e-49 199.9 113 80.5
SpUn0001_0720 Schrenkiella parvula HOM05D006377 ORTHO05D008001 3.1e-49 199.1 198 56.1
Sabra13G0035000 Salix brachista HOM05D006377 ORTHO05D008001 2.6e-48 196.1 170 65.3
Zm00001eb061670 Zea mays HOM05D006377 ORTHO05D008001 3.4e-48 195.7 146 64.4
Psat5g039080 Pisum sativum HOM05D006377 ORTHO05D008001 1.3e-47 193.7 175 60.6
HPP92_001948 Vanilla planifolia HOM05D006377 ORTHO05D008001 1.7e-47 193.4 202 53.5
Zm00001eb061700 Zea mays HOM05D006377 ORTHO05D008001 1.7e-47 193.4 149 65.1
Manes.09G157000 Manihot esculenta HOM05D006377 ORTHO05D008001 3.8e-47 192.2 175 62.9
Zm00001eb061710 Zea mays HOM05D006377 ORTHO05D008001 7.8e-45 184.5 164 60.4
AUR62004997 Chenopodium quinoa HOM05D006377 ORTHO05D008001 1.3e-44 183.7 175 62.9
SEGI_38373 Sequoiadendron giganteum HOM05D006377 ORTHO05D008001 1.1e-43 180.6 145 63.4
AagrBONN_evm.TU.Sc2ySwM_368.50 Anthoceros agrestis HOM05D006377 ORTHO05D008001 1.6e-42 176.8 146 59.6
AagrBONN_evm.TU.Sc2ySwM_344.5347 Anthoceros agrestis HOM05D006377 ORTHO05D008001 2.8e-42 176.0 158 55.1
Hma1.2p1_0332F.1_g127760 Hydrangea macrophylla HOM05D006377 ORTHO05D008001 6.2e-42 174.9 153 66.0
Pp3c1_22450 Physcomitrium patens HOM05D006377 ORTHO05D008001 1.5e-40 170.2 109 73.4
Mapoly0032s0089 Marchantia polymorpha HOM05D006377 ORTHO05D008001 1.7e-39 166.8 142 57.7
Pp3c2_13970 Physcomitrium patens HOM05D006377 ORTHO05D008001 2.9e-39 166.0 120 68.3
AagrBONN_evm.TU.Sc2ySwM_368.3396 Anthoceros agrestis HOM05D006377 ORTHO05D008001 1.9e-38 163.3 109 65.1
DCAR_009137 Daucus carota HOM05D006377 ORTHO05D008001 4.2e-38 162.2 171 58.5
CBR_g55374 Chara braunii HOM05D006377 ORTHO05D008001 9.3e-38 161.0 113 62.8
unitig_748.g7013 Utricularia gibba HOM05D000757 ORTHO05D000622 2.7e-37 159.5 156 53.8
SMO137G0026 Selaginella moellendorffii HOM05D006377 ORTHO05D008001 7.9e-37 157.9 108 65.7
MCO15G508 Micromonas commoda HOM05D006377 ORTHO05D008001 5.1e-28 128.6 109 54.1
Cre07.g315150 Chlamydomonas reinhardtii HOM05D006377 ORTHO05D008001 2.5e-27 126.3 155 43.2
Zm00001eb061680 Zea mays HOM05D006377 ORTHO05D008001 1.4e-25 120.6 117 51.3
PRCOL_00004455 Prasinoderma coloniale HOM05D006377 ORTHO05D008001 9.3e-22 107.8 108 48.1
Hma1.2p1_0332F.1_g127740 Hydrangea macrophylla HOM05D006377 ORTHO05D008001 1.9e-19 100.1 90 55.6
Actinidia36920 Actinidia chinensis HOM05D006377 ORTHO05D057244 8.5e-15 84.7 146 43.8


User provided reference genes

Program Settings