Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0039302 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D001296 5.7e-62 240.7 122 100.0
TAR624G0298 Trochodendron aralioides HOM05D002677 ORTHO05D002906 1.7e-29 132.9 73 84.9
Actinidia32197 Actinidia chinensis HOM05D000749 ORTHO05D001296 4.9e-29 131.3 95 68.4
Rhsim08G0240600 Rhododendron simsii HOM05D002677 ORTHO05D002906 1.1e-28 130.2 73 87.7
Prupe.3G038400 Prunus persica HOM05D000749 ORTHO05D001296 2.4e-28 129.0 73 86.3
Lalb_Chr10g0101401 Lupinus albus HOM05D000749 ORTHO05D001296 9.3e-28 127.1 82 70.7
Hma1.2p1_0229F.1_g096700 Hydrangea macrophylla HOM05D000749 ORTHO05D001296 1.6e-27 126.3 73 83.6
CiPaw.02G134400 Carya illinoinensis HOM05D000749 ORTHO05D001296 2.1e-27 125.9 73 80.8
Oeu020353.1 Olea europaea HOM05D000749 ORTHO05D001296 2.7e-27 125.6 93 66.7
vmacro15045 Vaccinium macrocarpon HOM05D002029 ORTHO05D002158 3.5e-27 125.2 75 77.3
Sed0015945 Sechium edule HOM05D000749 ORTHO05D001296 4.6e-27 124.8 75 78.7
GSVIVG01016728001 Vitis vinifera HOM05D000749 ORTHO05D001296 4.6e-27 124.8 73 82.2
QL05p003896 Quercus lobata HOM05D000749 ORTHO05D001296 6.0e-27 124.4 73 78.1
Atru.chr1.4045 Acer truncatum HOM05D000749 ORTHO05D001296 1.0e-26 123.6 73 78.1
Aqoxy7G04092 Aquilegia oxysepala HOM05D000749 ORTHO05D001296 1.3e-26 123.2 73 79.5
CDE11G1256 Ceratophyllum demersum HOM05D000749 ORTHO05D001296 1.3e-26 123.2 82 70.7
MD17G1165300 Malus domestica HOM05D000749 ORTHO05D001296 1.3e-26 123.2 72 83.3
CANSAT56G2877 Cannabis sativa HOM05D000749 ORTHO05D001296 1.7e-26 122.9 73 75.3
Ciclev10026604m.g Citrus clementina HOM05D000749 ORTHO05D001296 2.3e-26 122.5 73 78.1
HanXRQChr08g0221031 Helianthus annuus HOM05D000749 ORTHO05D001296 2.3e-26 122.5 68 85.3
Phvul.010G128100 Phaseolus vulgaris HOM05D000749 ORTHO05D001296 3.0e-26 122.1 82 70.7
Cc04_g01140 Coffea canephora HOM05D000749 ORTHO05D001296 3.9e-26 121.7 73 78.1
Manes.04G147100 Manihot esculenta HOM05D000749 ORTHO05D001296 3.9e-26 121.7 73 78.1
THA.LOC104813962 Tarenaya hassleriana HOM05D000749 ORTHO05D001296 3.9e-26 121.7 73 78.1
Lj5A33G46 Lonicera japonica HOM05D000749 ORTHO05D001296 6.6e-26 120.9 70 81.4
Lj3g0014096 Lotus japonicus HOM05D000749 ORTHO05D001296 6.6e-26 120.9 82 68.3
Glyma.16G009300 Glycine max HOM05D000749 ORTHO05D001296 8.7e-26 120.6 73 78.1
Nn8g38593 Nelumbo nucifera HOM05D000749 ORTHO05D001296 8.7e-26 120.6 73 76.7
Potri.003G068100 Populus trichocarpa HOM05D000749 ORTHO05D001296 1.1e-25 120.2 73 78.1
PGSC0003DMG400004364 Solanum tuberosum HOM05D000749 ORTHO05D001296 1.1e-25 120.2 73 79.5
Solyc12g049370.2 Solanum lycopersicum HOM05D000749 ORTHO05D001296 1.9e-25 119.4 73 78.1
Sopen12g023850 Solanum pennellii HOM05D000749 ORTHO05D001296 1.9e-25 119.4 73 78.1
ClCG09G001100 Citrullus lanatus HOM05D000749 ORTHO05D001296 4.3e-25 118.2 70 81.4
MELO3C024340.2 Cucumis melo HOM05D000749 ORTHO05D001296 4.3e-25 118.2 70 81.4
Nitab4.5_0000189g0100 Nicotiana tabacum HOM05D000749 ORTHO05D001296 4.3e-25 118.2 73 76.7
PGR102G0835 Punica granatum HOM05D000749 ORTHO05D001296 5.6e-25 117.9 93 59.1
SalBow6G4626 Salvia bowleyana HOM05D000749 ORTHO05D001296 7.3e-25 117.5 93 60.2
TPR.G16736 Trifolium pratense HOM05D000749 ORTHO05D001296 7.3e-25 117.5 82 67.1
Cpa.g.sc25.139 Carica papaya HOM05D000749 ORTHO05D001296 1.3e-24 116.7 78 71.8
CsaV3_7G034310 Cucumis sativus L. HOM05D000749 ORTHO05D001296 1.3e-24 116.7 70 80.0
ECA247G1406 Erigeron canadensis HOM05D000749 ORTHO05D001296 1.3e-24 116.7 72 77.8
Glyma.07G040700 Glycine max HOM05D000749 ORTHO05D001296 1.3e-24 116.7 82 68.3
PSO421G0200 Papaver somniferum HOM05D000749 ORTHO05D001296 1.3e-24 116.7 72 73.6
DCAR_026420 Daucus carota HOM05D000749 ORTHO05D001296 1.6e-24 116.3 73 75.3
VMungo0331G0921 Vigna mungo HOM05D000749 ORTHO05D001296 1.6e-24 116.3 73 74.0
Sc12g0010720 Simmondsia chinensis HOM05D000749 ORTHO05D001296 2.1e-24 115.9 88 62.5
AUR62009913 Chenopodium quinoa HOM05D000030 ORTHO05D001296 2.8e-24 115.5 69 75.4
Gohir.D06G149600 Gossypium hirsutum HOM05D000749 ORTHO05D001296 2.8e-24 115.5 73 72.6
Gorai.010G174500 Gossypium raimondii HOM05D000749 ORTHO05D001296 2.8e-24 115.5 73 72.6
Sabra03G0039900 Salix brachista HOM05D002029 ORTHO05D002158 2.8e-24 115.5 73 75.3
SGA_v2.0_scaffold122G33324 Striga asiatica HOM05D000749 ORTHO05D001296 2.8e-24 115.5 73 72.6
Nitab4.5_0005192g0030 Nicotiana tabacum HOM05D000749 ORTHO05D001296 3.6e-24 115.2 76 73.7
Carub.0001s1717 Capsella rubella HOM05D000749 ORTHO05D001296 4.8e-24 114.8 73 72.6
COL.COLO4_30729 Corchorus olitorius HOM05D000749 ORTHO05D001296 4.8e-24 114.8 73 74.0
AT1G17410 Arabidopsis thaliana HOM05D000749 ORTHO05D001296 8.1e-24 114.0 73 72.6
FvH4_6g35060 Fragaria vesca HOM05D000749 ORTHO05D001296 8.1e-24 114.0 73 74.0
FAN09G4379 Fragaria x ananassa HOM05D000749 ORTHO05D001296 8.1e-24 114.0 73 74.0
Os02g0565100 Oryza sativa ssp. japonica HOM05D000749 ORTHO05D001296 8.1e-24 114.0 73 69.9
RcHm_v2.0_Chr2g0146231 Rosa chinensis HOM05D000749 ORTHO05D001296 8.1e-24 114.0 73 74.0
TWI59G0744 Tripterygium wilfordii HOM05D000749 ORTHO05D001296 8.1e-24 114.0 68 79.4
EL10Ac7g16435 Beta vulgaris HOM05D000749 ORTHO05D001296 1.1e-23 113.6 68 77.9
Thhalv10008875m.g Eutrema salsugineum HOM05D000749 ORTHO05D001296 1.1e-23 113.6 73 69.9
BcaB03g13000 Brassica carinata HOM05D000749 ORTHO05D001296 1.4e-23 113.2 73 71.2
BcaC07g38855 Brassica carinata HOM05D000749 ORTHO05D001296 1.4e-23 113.2 73 71.2
A08p30910 Brassica napus HOM05D002677 ORTHO05D002906 1.4e-23 113.2 73 69.9
C08p17920 Brassica napus HOM05D002677 ORTHO05D002906 1.4e-23 113.2 73 71.2
BolC8t49424H Brassica oleracea HOM05D000749 ORTHO05D001296 1.4e-23 113.2 73 71.2
BraA08t35023Z Brassica rapa HOM05D002677 ORTHO05D002906 1.4e-23 113.2 73 69.9
CARHR018000 Cardamine hirsuta HOM05D000749 ORTHO05D001296 1.4e-23 113.2 73 72.6
Duzib235G0410 Durio zibethinus HOM05D000749 ORTHO05D001296 1.4e-23 113.2 78 67.9
SalBow6G2406 Salvia bowleyana HOM05D000749 ORTHO05D001296 1.4e-23 113.2 95 57.9
Zm00001eb182590 Zea mays HOM05D000749 ORTHO05D001296 1.4e-23 113.2 80 72.5
AL1G29670 Arabidopsis lyrata HOM05D000749 ORTHO05D001296 1.8e-23 112.8 73 69.9
FAN05G4377 Fragaria x ananassa HOM05D000749 ORTHO05D001296 2.4e-23 112.5 73 72.6
Thecc.06G123100 Theobroma cacao HOM05D000749 ORTHO05D001296 2.4e-23 112.5 70 74.3
AUR62001452 Chenopodium quinoa HOM05D000749 ORTHO05D001296 3.1e-23 112.1 68 75.0
FAN14G4991 Fragaria x ananassa HOM05D000749 ORTHO05D001296 4.0e-23 111.7 73 72.6
Migut.I01095 Erythranthe guttata HOM05D000749 ORTHO05D001296 5.3e-23 111.3 75 70.7
Eucgr.J02803 Eucalyptus grandis HOM05D000749 ORTHO05D001296 5.3e-23 111.3 80 67.5
Hund18680 Selenicereus undatus HOM05D000749 ORTHO05D001296 6.9e-23 110.9 68 76.5
Ah.08g217020 Amaranthus hybridus HOM05D002029 ORTHO05D001296 1.5e-22 109.8 68 73.5
ATR0006G045 Amborella trichopoda HOM05D000749 ORTHO05D001296 1.5e-22 109.8 68 75.0
Lsat_1_v5_gn_1_37941 Lactuca sativa HOM05D002029 ORTHO05D002158 2.0e-22 109.4 93 60.2
Actinidia21798 Actinidia chinensis HOM05D000749 ORTHO05D001296 9.9e-22 107.1 66 78.8
Gohir.A06G143750 Gossypium hirsutum HOM05D000749 ORTHO05D001296 9.9e-22 107.1 73 68.5
FAN02G4206 Fragaria x ananassa HOM05D000749 ORTHO05D001296 8.4e-21 104.0 67 73.1
SMO340G0055 Selaginella moellendorffii HOM05D000749 ORTHO05D001296 6.6e-18 94.4 68 64.7
Mapoly0224s0010 Marchantia polymorpha HOM05D000749 ORTHO05D001296 1.9e-17 92.8 68 66.2
SMO180G0013 Selaginella moellendorffii HOM05D000749 ORTHO05D001296 5.6e-17 91.3 68 63.2
Dinv37853 Davidia involucrata HOM05D000749 ORTHO05D001296 5.3e-15 84.7 54 77.8
Aa31LG7G2280 Aethionema arabicum HOM05D000749 ORTHO05D001296 9.0e-15 84.0 131 38.9
ATR0006G015 Amborella trichopoda HOM05D000749 ORTHO05D001296 1.7e-13 79.7 76 53.9
CBR_g48984 Chara braunii HOM05D000749 ORTHO05D001296 1.9e-12 76.3 68 55.9
Mapoly0069s0013 Marchantia polymorpha HOM05D000749 ORTHO05D001296 2.4e-12 75.9 68 51.5
Cre16.g654300 Chlamydomonas reinhardtii HOM05D000749 ORTHO05D001296 5.4e-12 74.7 91 44.0
AagrBONN_evm.TU.Sc2ySwM_228.2223 Anthoceros agrestis HOM05D000749 ORTHO05D001296 7.1e-12 74.3 68 50.0
PRCOL_00001720 Prasinoderma coloniale HOM05D000749 ORTHO05D018309 1.6e-11 73.2 68 51.5
PRCOL_00004127 Prasinoderma coloniale HOM05D000749 ORTHO05D001296 1.6e-11 73.2 68 51.5
MCO10G180 Micromonas commoda HOM05D000749 ORTHO05D001296 6.0e-11 71.2 68 50.0
Mapoly0002s0134 Marchantia polymorpha HOM05D000749 ORTHO05D018309 3.0e-10 68.9 70 48.6
Pp3c26_8320 Physcomitrium patens HOM05D000749 ORTHO05D018309 1.5e-09 66.6 72 45.8
SMO364G0831 Selaginella moellendorffii HOM05D000749 ORTHO05D018309 1.5e-09 66.6 70 47.1
Medtr8g021233 Medicago truncatula HOM05D000749 ORTHO05D001296 2.5e-09 65.9 37 78.4
AagrBONN_evm.TU.Sc2ySwM_344.4654 Anthoceros agrestis HOM05D000749 ORTHO05D018309 4.3e-09 65.1 72 44.4
Haze_16055 Corylus avellana HOM05D000749 ORTHO05D001296 1.6e-08 63.2 39 74.4
Cre12.g558700 Chlamydomonas reinhardtii HOM05D000749 ORTHO05D018309 2.1e-08 62.8 68 44.1
MBI04_g36069_MAGBIO Magnolia biondii HOM05D000749 ORTHO05D001296 1.4e-07 60.1 43 60.5
Pp3c26_13710 Physcomitrium patens HOM05D000749 ORTHO05D001296 1.8e-07 59.7 77 41.6
PRCOL_00006887 Prasinoderma coloniale HOM05D000749 ORTHO05D001296 2.4e-07 59.3 62 48.4
SGA_v2.0_scaffold71G23889 Striga asiatica HOM05D002029 ORTHO05D002158 3.1e-07 58.9 49 61.2
MBI19_g05295_MAGBIO Magnolia biondii HOM05D000749 ORTHO05D001296 4.0e-07 58.5 38 65.8
A09p08210 Brassica napus HOM05D000336 ORTHO05D002301 9.0e-07 57.4 82 43.9
C09p09280 Brassica napus HOM05D000336 ORTHO05D002301 9.0e-07 57.4 82 43.9
BolC9t53841H Brassica oleracea HOM05D000336 ORTHO05D002301 9.0e-07 57.4 82 43.9
Cpa.g.sc4.78 Carica papaya HOM05D000749 ORTHO05D001296 9.0e-07 57.4 84 44.0
BraA09t36472Z Brassica rapa HOM05D000336 ORTHO05D002301 1.2e-06 57.0 82 42.7
Sp2g26430 Schrenkiella parvula HOM05D000749 ORTHO05D001296 1.2e-06 57.0 70 47.1
SpUn0781_0010 Schrenkiella parvula HOM05D000749 ORTHO05D001296 1.2e-06 57.0 79 43.0
Potri.012G093800 Populus trichocarpa HOM05D000749 ORTHO05D001296 1.5e-06 56.6 70 47.1
FAN04G0703 Fragaria x ananassa HOM05D000749 ORTHO05D008721 2.6e-06 55.8 73 43.8
FAN13G2053 Fragaria x ananassa HOM05D000749 ORTHO05D001296 2.6e-06 55.8 73 43.8
THA.LOC104818193 Tarenaya hassleriana HOM05D000749 ORTHO05D001296 2.6e-06 55.8 80 42.5
BcaC01g02574 Brassica carinata HOM05D000749 ORTHO05D001296 3.4e-06 55.5 70 45.7
A06p29990 Brassica napus HOM05D000749 ORTHO05D001296 3.4e-06 55.5 70 45.7
C03p63310 Brassica napus HOM05D000749 ORTHO05D001296 3.4e-06 55.5 70 45.7
BolC3t18584H Brassica oleracea HOM05D000749 ORTHO05D001296 3.4e-06 55.5 70 45.7
BraA06t25950Z Brassica rapa HOM05D000749 ORTHO05D001296 3.4e-06 55.5 70 45.7
Migut.I00479 Erythranthe guttata HOM05D000749 ORTHO05D001296 3.4e-06 55.5 81 39.5
Thhalv10004851m.g Eutrema salsugineum HOM05D000749 ORTHO05D001296 3.4e-06 55.5 70 45.7
FvH4_5g07600 Fragaria vesca HOM05D000749 ORTHO05D001296 3.4e-06 55.5 80 40.0
FAN18G2072 Fragaria x ananassa HOM05D000063 ORTHO05D008721 3.4e-06 55.5 80 40.0
Glyma.05G045200 Glycine max HOM05D000749 ORTHO05D001296 3.4e-06 55.5 70 45.7
Glyma.17G127400 Glycine max HOM05D000749 ORTHO05D001296 3.4e-06 55.5 70 45.7
Lj4g0020571 Lotus japonicus HOM05D000749 ORTHO05D001296 3.4e-06 55.5 70 45.7
Lalb_Chr07g0183241 Lupinus albus HOM05D000749 ORTHO05D001296 3.4e-06 55.5 74 44.6
Manes.14G055000 Manihot esculenta HOM05D000749 ORTHO05D001296 3.4e-06 55.5 70 45.7
RcHm_v2.0_Chr7g0190891 Rosa chinensis HOM05D000749 ORTHO05D001296 3.4e-06 55.5 70 45.7
AL8G40390 Arabidopsis lyrata HOM05D000749 ORTHO05D001296 4.5e-06 55.1 70 45.7
AT5G63310 Arabidopsis thaliana HOM05D000749 ORTHO05D001296 4.5e-06 55.1 70 45.7
Lsat_1_v5_gn_4_78760 Lactuca sativa HOM05D000749 ORTHO05D001296 4.5e-06 55.1 80 38.8
Phvul.003G208500 Phaseolus vulgaris HOM05D000749 ORTHO05D001296 4.5e-06 55.1 70 45.7
Sc04g0000920 Simmondsia chinensis HOM05D000749 ORTHO05D001296 4.5e-06 55.1 70 45.7
VMungo1215G1043 Vigna mungo HOM05D000749 ORTHO05D001296 4.5e-06 55.1 70 44.3
Aa31LG1G18690 Aethionema arabicum HOM05D000749 ORTHO05D001296 5.8e-06 54.7 70 45.7
arahy.Tifrunner.gnm1.ann1.80CTZT Arachis hypogaea HOM05D000749 ORTHO05D001296 5.8e-06 54.7 71 45.1
AUR62025717 Chenopodium quinoa HOM05D000749 ORTHO05D001296 5.8e-06 54.7 86 38.4
QL10p005004 Quercus lobata HOM05D000749 ORTHO05D001296 5.8e-06 54.7 70 45.7
Hund05651 Selenicereus undatus HOM05D000749 ORTHO05D001296 5.8e-06 54.7 70 45.7
GSVIVG01007535001 Vitis vinifera HOM05D000749 ORTHO05D001296 5.8e-06 54.7 80 40.0
Ah.15g095300 Amaranthus hybridus HOM05D000749 ORTHO05D001296 7.6e-06 54.3 78 39.7
MSTRG.22919 Avicennia marina HOM05D000749 ORTHO05D001296 7.6e-06 54.3 81 39.5
EL10Ac7g18084 Beta vulgaris HOM05D000749 ORTHO05D001296 7.6e-06 54.3 78 39.7
Carub.0008s2406 Capsella rubella HOM05D000749 ORTHO05D001296 7.6e-06 54.3 70 44.3
CARHR277180 Cardamine hirsuta HOM05D000749 ORTHO05D001296 7.6e-06 54.3 70 44.3
AUR62001287 Chenopodium quinoa HOM05D000749 ORTHO05D001296 7.6e-06 54.3 86 38.4
ClCG03G003540 Citrullus lanatus HOM05D000749 ORTHO05D001296 7.6e-06 54.3 74 41.9
MELO3C002338.2 Cucumis melo HOM05D000749 ORTHO05D001296 7.6e-06 54.3 74 41.9
CsaV3_1G009350 Cucumis sativus L. HOM05D000749 ORTHO05D001296 7.6e-06 54.3 74 41.9
Sed0019879 Sechium edule HOM05D000749 ORTHO05D001296 7.6e-06 54.3 74 41.9
Atru.chr9.1018 Acer truncatum HOM05D000749 ORTHO05D001296 1.0e-05 53.9 70 44.3
CSS0045626 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D001296 1.0e-05 53.9 70 45.7
Cc04_g10270 Coffea canephora HOM05D000749 ORTHO05D001296 1.0e-05 53.9 87 37.9
ECA232G2562 Erigeron canadensis HOM05D000749 ORTHO05D001296 1.0e-05 53.9 70 44.3
HanXRQChr16g0497911 Helianthus annuus HOM05D000749 ORTHO05D001296 1.0e-05 53.9 87 37.9
MBI09_g13936_MAGBIO Magnolia biondii HOM05D000749 ORTHO05D001296 1.0e-05 53.9 73 42.5
Nn4g22449 Nelumbo nucifera HOM05D000749 ORTHO05D001296 1.0e-05 53.9 96 35.4


User provided reference genes

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