Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0039065 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1775.4 879 100.0
CSS0035062 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1528.8 978 82.2
CSS0002238 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1527.3 1004 80.4
CSS0035503 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1508.4 995 80.0
CSS0005038 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1505.7 1003 79.9
Actinidia39296 Actinidia chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1442.6 995 76.5
vmacro09293 Vaccinium macrocarpon HOM05D004263 ORTHO05D004931 0.0e+00 1407.1 1035 72.7
Hma1.2p1_0565F.1_g179560 Hydrangea macrophylla HOM05D004263 ORTHO05D004931 0.0e+00 1388.6 991 74.6
Ciclev10014147m.g Citrus clementina HOM05D004263 ORTHO05D004931 0.0e+00 1379.8 994 72.7
TAR627G0082 Trochodendron aralioides HOM05D004263 ORTHO05D004931 0.0e+00 1375.1 995 72.2
GSVIVG01030005001 Vitis vinifera HOM05D004263 ORTHO05D004931 0.0e+00 1374.0 994 73.7
TWI75G0058 Tripterygium wilfordii HOM05D004263 ORTHO05D004931 0.0e+00 1373.6 995 72.6
Manes.12G082900 Manihot esculenta HOM05D004263 ORTHO05D004931 0.0e+00 1360.1 995 71.7
CANSAT64G2398 Cannabis sativa HOM05D004263 ORTHO05D004931 0.0e+00 1357.8 995 71.4
CiPaw.03G169700 Carya illinoinensis HOM05D004263 ORTHO05D004931 0.0e+00 1357.4 996 72.0
COL.COLO4_13682 Corchorus olitorius HOM05D004263 ORTHO05D004931 0.0e+00 1356.7 991 72.0
Prupe.3G231000 Prunus persica HOM05D004263 ORTHO05D004931 0.0e+00 1355.9 995 71.8
Thecc.02G171500 Theobroma cacao HOM05D004263 ORTHO05D004931 0.0e+00 1352.8 995 71.9
Gohir.A01G015400 Gossypium hirsutum HOM05D004263 ORTHO05D004931 0.0e+00 1351.7 995 71.3
Gorai.002G017100 Gossypium raimondii HOM05D004263 ORTHO05D004931 0.0e+00 1350.9 995 71.5
FvH4_6g44560 Fragaria vesca HOM05D004263 ORTHO05D004931 0.0e+00 1350.1 995 71.6
RcHm_v2.0_Chr2g0161771 Rosa chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1350.1 995 71.8
Gohir.D01G015400 Gossypium hirsutum HOM05D004263 ORTHO05D004931 0.0e+00 1347.8 995 71.4
QL08p037295 Quercus lobata HOM05D004263 ORTHO05D004931 0.0e+00 1347.8 991 71.7
FAN14G1228 Fragaria x ananassa HOM05D004263 ORTHO05D004931 0.0e+00 1338.6 1020 70.2
MD17G1084700 Malus domestica HOM05D004263 ORTHO05D004931 0.0e+00 1337.4 995 71.3
MD14G1065300 Malus domestica HOM05D004263 ORTHO05D004931 0.0e+00 1333.9 996 71.0
FAN02G3638 Fragaria x ananassa HOM05D004263 ORTHO05D004931 0.0e+00 1333.5 1020 70.0
Cc04_g12270 Coffea canephora HOM05D004263 ORTHO05D004931 0.0e+00 1332.0 1002 71.4
Eucgr.K00914 Eucalyptus grandis HOM05D004263 ORTHO05D004931 0.0e+00 1330.9 994 70.4
Cfa010655 Carpinus fangiana HOM05D004263 ORTHO05D004931 0.0e+00 1328.5 995 70.7
Solyc06g005080.4 Solanum lycopersicum HOM05D004263 ORTHO05D004931 0.0e+00 1327.4 994 69.9
SGA_v2.0_scaffold90G27889 Striga asiatica HOM05D004263 ORTHO05D004931 0.0e+00 1327.0 1001 70.3
PGR142G2990 Punica granatum HOM05D004263 ORTHO05D004931 0.0e+00 1322.4 995 69.8
PSO801G0468 Papaver somniferum HOM05D004263 ORTHO05D004931 0.0e+00 1320.1 997 70.2
Lj3g0003932 Lotus japonicus HOM05D004263 ORTHO05D004931 0.0e+00 1319.7 996 70.1
Oeu001693.1 Olea europaea HOM05D004263 ORTHO05D004931 0.0e+00 1319.7 994 71.0
Peaxi162Scf00255g01022 Petunia axillaris HOM05D004263 ORTHO05D004931 0.0e+00 1319.3 994 69.8
FAN09G1275 Fragaria x ananassa HOM05D004263 ORTHO05D004931 0.0e+00 1318.5 1020 69.2
arahy.Tifrunner.gnm1.ann1.RA2UAB Arachis hypogaea HOM05D004263 ORTHO05D004931 0.0e+00 1316.2 1021 69.0
Aqoxy1G01192 Aquilegia oxysepala HOM05D004263 ORTHO05D004931 0.0e+00 1315.8 994 69.0
Psat2g144400 Pisum sativum HOM05D004263 ORTHO05D004931 0.0e+00 1315.1 995 70.1
Potri.013G147600 Populus trichocarpa HOM05D004263 ORTHO05D004931 0.0e+00 1315.1 983 70.5
Sed0028127 Sechium edule HOM05D004263 ORTHO05D004931 0.0e+00 1314.3 991 69.1
Sopen06g001070 Solanum pennellii HOM05D004263 ORTHO05D004931 0.0e+00 1313.9 994 69.3
Migut.O00120 Erythranthe guttata HOM05D004263 ORTHO05D004931 0.0e+00 1312.7 993 69.4
Ca_01536_v3 Cicer arietinum L. HOM05D004263 ORTHO05D004931 0.0e+00 1311.2 994 69.7
PSO339G5244 Papaver somniferum HOM05D004263 ORTHO05D004931 0.0e+00 1308.5 997 69.5
Glyma.13G301100 Glycine max HOM05D004263 ORTHO05D004931 0.0e+00 1305.0 982 70.4
DCAR_009724 Daucus carota HOM05D004263 ORTHO05D004931 0.0e+00 1303.5 973 71.4
HanXRQChr07g0200651 Helianthus annuus HOM05D004263 ORTHO05D004931 0.0e+00 1302.3 994 69.2
Medtr8g063380 Medicago truncatula HOM05D004263 ORTHO05D004931 0.0e+00 1300.0 1008 68.8
ECA246G4434 Erigeron canadensis HOM05D004263 ORTHO05D004931 0.0e+00 1299.3 993 69.6
Haze_13086 Corylus avellana HOM05D004263 ORTHO05D004931 0.0e+00 1297.7 1090 64.9
CsaV3_7G004120 Cucumis sativus L. HOM05D004263 ORTHO05D004931 0.0e+00 1297.3 993 68.8
Sabra13G0119200 Salix brachista HOM05D004263 ORTHO05D004931 0.0e+00 1297.3 964 71.1
Phvul.005G107700 Phaseolus vulgaris HOM05D004263 ORTHO05D004931 0.0e+00 1297.0 982 69.8
SalBow7G3995 Salvia bowleyana HOM05D004263 ORTHO05D004931 0.0e+00 1292.7 988 69.0
arahy.Tifrunner.gnm1.ann1.0PC56D Arachis hypogaea HOM05D004263 ORTHO05D004931 0.0e+00 1286.9 1083 64.9
Glyma.12G201100 Glycine max HOM05D004263 ORTHO05D004931 0.0e+00 1284.6 992 68.4
Thhalv10006686m.g Eutrema salsugineum HOM05D004263 ORTHO05D004931 0.0e+00 1282.3 982 68.5
THA.LOC104809434 Tarenaya hassleriana HOM05D004263 ORTHO05D004931 0.0e+00 1276.5 991 67.5
Sp1g11070 Schrenkiella parvula HOM05D004263 ORTHO05D004931 0.0e+00 1275.4 995 67.5
A06p09160 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1271.5 998 67.4
CARHR012770 Cardamine hirsuta HOM05D004263 ORTHO05D004931 0.0e+00 1271.1 996 67.4
Lsat_1_v5_gn_3_39980 Lactuca sativa HOM05D004263 ORTHO05D004931 0.0e+00 1271.1 978 68.5
BraA06t24102Z Brassica rapa HOM05D004263 ORTHO05D004931 0.0e+00 1269.2 1007 66.7
Carub.0001s1218 Capsella rubella HOM05D004263 ORTHO05D004931 0.0e+00 1266.1 995 67.3
AT1G12470 Arabidopsis thaliana HOM05D004263 ORTHO05D004931 0.0e+00 1257.7 995 66.8
Ah.11g047230 Amaranthus hybridus HOM05D004263 ORTHO05D004931 0.0e+00 1257.3 994 66.8
AL1G23830 Arabidopsis lyrata HOM05D004263 ORTHO05D004931 0.0e+00 1256.5 996 66.5
BcaB03g13185 Brassica carinata HOM05D004263 ORTHO05D004931 0.0e+00 1255.7 995 66.6
BolC5t29815H Brassica oleracea HOM05D004263 ORTHO05D004931 0.0e+00 1255.7 998 66.9
Aa31LG1G2150 Aethionema arabicum HOM05D004263 ORTHO05D004931 0.0e+00 1255.4 997 67.0
EL10As1g23122 Beta vulgaris HOM05D004263 ORTHO05D004931 0.0e+00 1255.0 988 67.1
C08p15450 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1251.9 1011 65.7
A08p32810 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1250.0 1011 65.7
Duzib248G0991 Durio zibethinus HOM05D004263 ORTHO05D004931 0.0e+00 1249.6 995 68.0
C05p10740 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1245.3 1001 66.3
BraA08t35204Z Brassica rapa HOM05D004263 ORTHO05D004931 0.0e+00 1243.8 1013 65.4
Haze_03591 Corylus avellana HOM05D004263 ORTHO05D004931 0.0e+00 1243.0 1031 66.2
Nn2g15850 Nelumbo nucifera HOM05D004263 ORTHO05D004931 0.0e+00 1239.2 943 69.4
Lalb_Chr22g0356351 Lupinus albus HOM05D004263 ORTHO05D004931 0.0e+00 1238.8 938 70.1
BolC8t49173H Brassica oleracea HOM05D004263 ORTHO05D004931 0.0e+00 1219.1 1043 62.9
HPP92_004167 Vanilla planifolia HOM05D004263 ORTHO05D004931 0.0e+00 1217.6 983 64.3
AUR62034472 Chenopodium quinoa HOM05D004263 ORTHO05D004931 0.0e+00 1214.9 994 65.2
ClCG02G001300 Citrullus lanatus HOM05D004263 ORTHO05D004931 0.0e+00 1211.8 1016 65.0
Lj8C117G6 Lonicera japonica HOM05D004263 ORTHO05D004931 0.0e+00 1206.8 984 67.4
Atru.chr6.3077 Acer truncatum HOM05D004263 ORTHO05D004931 0.0e+00 1161.0 934 67.8
AUR62041769 Chenopodium quinoa HOM05D004263 ORTHO05D004931 0.0e+00 1150.6 994 63.0
Os08g0178100 Oryza sativa ssp. japonica HOM05D004263 ORTHO05D004931 0.0e+00 1149.4 987 61.8
Sc08g0004410 Simmondsia chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1146.3 901 66.8
Hma1.2p1_0565F.1_g179570 Hydrangea macrophylla HOM05D004263 ORTHO05D004931 0.0e+00 1132.1 817 74.5
Actinidia30490 Actinidia chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1130.2 791 76.6
CDE05G0585 Ceratophyllum demersum HOM05D004263 ORTHO05D004931 0.0e+00 1128.6 975 61.9
Rhsim04G0063000 Rhododendron simsii HOM05D004263 ORTHO05D004931 0.0e+00 1118.2 680 84.9
BcaC05g25186 Brassica carinata HOM05D004263 ORTHO05D004931 0.0e+00 1088.9 851 68.3
unitig_0.g1433 Utricularia gibba HOM05D004263 ORTHO05D004931 0.0e+00 1086.2 846 68.2
Cpa.g.sc34.88 Carica papaya HOM05D004263 ORTHO05D004931 3.5e-302 1041.6 680 79.4
MBI02_g13236_MAGBIO Magnolia biondii HOM05D004263 ORTHO05D004931 5.0e-301 1037.7 778 71.7
ATR0737G173 Amborella trichopoda HOM05D004263 ORTHO05D004931 3.1e-298 1028.5 935 60.1
MSTRG.11470 Avicennia marina HOM05D004263 ORTHO05D004931 6.4e-296 1020.8 680 77.9
Cfa014543 Carpinus fangiana HOM05D004263 ORTHO05D004931 4.1e-295 1018.1 793 68.7
Lj1C736G5 Lonicera japonica HOM05D004263 ORTHO05D004931 6.8e-290 1000.7 712 74.9
MELO3C018764.2 Cucumis melo HOM05D004263 ORTHO05D004931 8.9e-290 1000.3 798 67.0
Medtr5g026090 Medicago truncatula HOM05D004263 ORTHO05D004931 5.6e-284 981.1 696 74.4
Pp3c14_1240 Physcomitrium patens HOM05D004263 ORTHO05D004931 5.4e-271 937.9 1005 51.1
Mapoly0011s0120 Marchantia polymorpha HOM05D004263 ORTHO05D004931 3.0e-269 932.2 983 51.3
Zm00001eb412950 Zea mays HOM05D004263 ORTHO05D004931 6.4e-256 887.9 664 69.6
Dinv23716 Davidia involucrata HOM05D004263 ORTHO05D004931 1.0e-253 880.6 558 82.8
SMO239G0082 Selaginella moellendorffii HOM05D004263 ORTHO05D004931 3.9e-237 825.5 978 45.8
AagrBONN_evm.TU.Sc2ySwM_228.3812 Anthoceros agrestis HOM05D004263 ORTHO05D004931 2.4e-218 763.1 794 52.1
Oeu001695.1 Olea europaea HOM05D004263 ORTHO05D004931 1.2e-212 744.2 502 76.9
Nitab4.5_0001514g0010 Nicotiana tabacum HOM05D004263 ORTHO05D004931 9.8e-212 741.1 614 65.5
QL08p037237 Quercus lobata HOM05D004263 ORTHO05D004931 2.7e-206 723.0 649 62.2
SHI10474 Sapria himalayana HOM05D004263 ORTHO05D004931 1.2e-180 637.9 592 57.1
Nitab4.5_0000025g0490 Nicotiana tabacum HOM05D004263 ORTHO05D004931 2.8e-174 616.7 577 60.0
TPR.G26159 Trifolium pratense HOM05D004263 ORTHO05D004931 7.6e-172 608.6 514 64.0
Nitab4.5_0001514g0020 Nicotiana tabacum HOM05D004263 ORTHO05D004931 9.0e-149 531.9 336 79.5
VMungo1080G0385 Vigna mungo HOM05D004263 ORTHO05D004931 6.3e-134 482.6 423 60.0
Nitab4.5_0000025g0510 Nicotiana tabacum HOM05D004263 ORTHO05D004931 8.2e-126 455.7 282 80.5
CAN.G224.16 Capsicum annuum HOM05D004263 ORTHO05D004931 5.9e-108 396.4 250 80.0
Dinv23715 Davidia involucrata HOM05D004263 ORTHO05D004931 3.1e-101 374.0 342 60.8
CSS0037177 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 2.7e-92 344.4 212 82.5
MSTRG.11471 Avicennia marina HOM05D004263 ORTHO05D004931 9.4e-90 335.9 232 71.6
CAN.G2148.2 Capsicum annuum HOM05D004263 ORTHO05D004931 3.1e-85 320.9 291 63.2
CAN.G2148.1 Capsicum annuum HOM05D004263 ORTHO05D004931 4.5e-84 317.0 232 68.1
Lj1C736T2 Lonicera japonica HOM05D004263 ORTHO05D004931 1.3e-83 315.5 207 75.8
PRCOL_00001544 Prasinoderma coloniale HOM05D004263 ORTHO05D004931 8.0e-81 306.2 755 31.1
TPR.G28496 Trifolium pratense HOM05D004086 ORTHO05D004641 9.2e-77 292.7 197 74.1
BcaC05g25136 Brassica carinata HOM05D004263 ORTHO05D004931 2.3e-75 288.1 204 68.6
Cfa022578 Carpinus fangiana HOM05D004263 ORTHO05D004931 1.1e-74 285.8 1013 25.2
CBR_g50947 Chara braunii HOM05D004263 ORTHO05D004931 5.8e-71 273.5 283 52.7
CAN.G224.18 Capsicum annuum HOM05D004263 ORTHO05D004931 4.9e-70 270.4 232 60.3
Cpa.g.sc34.89 Carica papaya HOM05D004263 ORTHO05D004931 2.7e-68 264.6 155 79.4
PGSC0003DMG400025399 Solanum tuberosum HOM05D004263 ORTHO05D004931 9.5e-66 256.1 194 66.5
Cre07.g328550 Chlamydomonas reinhardtii HOM05D004263 ORTHO05D004931 2.4e-61 241.5 817 28.0
Oeu001692.1 Olea europaea HOM05D004263 ORTHO05D004931 2.8e-57 228.0 124 87.1
Medtr8g471030 Medicago truncatula HOM05D004263 ORTHO05D004931 3.1e-56 224.6 127 80.3
Atru.chr5.268 Acer truncatum HOM05D004263 ORTHO05D004931 2.9e-46 191.4 135 65.2
CBR_g40703 Chara braunii HOM05D004263 ORTHO05D004931 5.1e-43 180.6 394 32.7
CSS0002414 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 9.6e-42 176.4 143 72.0
Atru.chr3.3152 Acer truncatum HOM05D004263 ORTHO05D004931 1.1e-40 172.9 120 66.7
SEGI_15765 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 4.9e-38 164.1 118 71.2
SEGI_30776 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 1.4e-37 162.5 115 72.2
SEGI_40242 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 1.6e-33 149.1 88 79.5
CAN.G224.15 Capsicum annuum HOM05D004263 ORTHO05D004931 5.8e-31 140.6 88 76.1
CBR_g40701 Chara braunii HOM05D004263 ORTHO05D004931 1.6e-28 132.5 163 47.9
CAN.G666.1 Capsicum annuum HOM05D004263 ORTHO05D004931 6.7e-27 127.1 97 64.9
BolC9t57681H Brassica oleracea HOM05D005294 ORTHO05D006720 8.7e-27 126.7 127 59.1
CAN.G2148.3 Capsicum annuum HOM05D004263 ORTHO05D004931 8.7e-27 126.7 75 81.3
SEGI_16142 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 8.7e-27 126.7 85 75.3
C09p48310 Brassica napus HOM05D005294 ORTHO05D006720 1.6e-25 122.5 127 57.5
SEGI_10945 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 1.8e-24 119.0 81 69.1
CSS0009942 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 1.6e-20 105.9 80 76.2
Nitab4.5_0000025g0500 Nicotiana tabacum HOM05D004263 ORTHO05D004931 1.6e-17 95.9 54 83.3
MD02G1222100 Malus domestica HOM05D004263 ORTHO05D004931 5.3e-16 90.9 51 82.4
unitig_0.g1434 Utricularia gibba HOM05D004263 ORTHO05D004931 1.5e-15 89.4 80 55.0
SEGI_34242 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 1.3e-14 86.3 110 44.5
Manes.13G151750 Manihot esculenta HOM05D004263 ORTHO05D004931 5.0e-14 84.3 173 34.1
SEGI_22414 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 3.2e-13 81.6 98 49.0
SEGI_06467 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 4.2e-13 81.3 81 55.6
SEGI_32704 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 4.2e-13 81.3 52 63.5
MCO10G067 Micromonas commoda HOM05D004263 ORTHO05D004931 7.4e-10 70.5 227 26.0
CAN.G224.17 Capsicum annuum HOM05D004263 ORTHO05D004931 8.2e-09 67.0 60 60.0


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