Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0039052 Camellia sinensis var. sinensis HOM05D002859 ORTHO05D003120 1.1e-37 159.5 79 100.0
CiPaw.05G096600 Carya illinoinensis HOM05D002859 ORTHO05D003120 1.4e-16 89.4 46 89.1
Actinidia13520 Actinidia chinensis HOM05D002859 ORTHO05D003120 1.2e-15 86.3 46 87.0
Oeu020000.2 Olea europaea HOM05D002859 ORTHO05D003120 2.6e-15 85.1 55 74.5
Cfa012832 Carpinus fangiana HOM05D002400 ORTHO05D002568 4.5e-15 84.3 79 55.7
SalBow7G1391 Salvia bowleyana HOM05D002859 ORTHO05D003120 4.5e-15 84.3 49 77.6
MSTRG.19534 Avicennia marina HOM05D002859 ORTHO05D003120 5.8e-15 84.0 46 80.4
Cfa009482 Carpinus fangiana HOM05D002859 ORTHO05D003120 5.8e-15 84.0 46 82.6
CiPaw.06G112300 Carya illinoinensis HOM05D002859 ORTHO05D003120 5.8e-15 84.0 46 82.6
Haze_12545 Corylus avellana HOM05D002859 ORTHO05D003120 5.8e-15 84.0 46 82.6
Actinidia33986 Actinidia chinensis HOM05D002859 ORTHO05D003120 9.9e-15 83.2 53 77.4
Sed0008148 Sechium edule HOM05D002859 ORTHO05D003120 1.3e-14 82.8 46 82.6
PGR102G2374 Punica granatum HOM05D002859 ORTHO05D003120 1.7e-14 82.4 46 82.6
Atru.chr12.1488 Acer truncatum HOM05D002859 ORTHO05D003120 2.2e-14 82.0 46 82.6
QL03p046958 Quercus lobata HOM05D002859 ORTHO05D003120 2.2e-14 82.0 45 80.0
RcHm_v2.0_Chr4g0428171 Rosa chinensis HOM05D002859 ORTHO05D003120 2.2e-14 82.0 46 80.4
SGA_v2.0_scaffold43G16338 Striga asiatica HOM05D002859 ORTHO05D003120 2.2e-14 82.0 46 80.4
GSVIVG01001140001 Vitis vinifera HOM05D002859 ORTHO05D003120 2.2e-14 82.0 46 84.8
Ciclev10029280m.g Citrus clementina HOM05D002859 ORTHO05D003120 2.9e-14 81.6 46 80.4
COL.COLO4_15649 Corchorus olitorius HOM05D002859 ORTHO05D003120 2.9e-14 81.6 46 82.6
Sabra01G0050900 Salix brachista HOM05D002859 ORTHO05D003120 2.9e-14 81.6 46 82.6
Potri.001G072300 Populus trichocarpa HOM05D002859 ORTHO05D003120 3.8e-14 81.3 46 82.6
Thecc.01G233400 Theobroma cacao HOM05D002859 ORTHO05D003120 3.8e-14 81.3 46 82.6
MSTRG.6038 Avicennia marina HOM05D002859 ORTHO05D003120 4.9e-14 80.9 46 84.8
A06p39500 Brassica napus HOM05D002859 ORTHO05D003120 4.9e-14 80.9 46 82.6
BraA06t26865Z Brassica rapa HOM05D002859 ORTHO05D003120 4.9e-14 80.9 46 82.6
Sp2g18370 Schrenkiella parvula HOM05D002859 ORTHO05D003120 4.9e-14 80.9 46 80.4
TWI18G0030 Tripterygium wilfordii HOM05D002859 ORTHO05D003120 4.9e-14 80.9 46 82.6
TWI36G1325 Tripterygium wilfordii HOM05D002859 ORTHO05D003120 4.9e-14 80.9 46 82.6
Carub.0008s0730 Capsella rubella HOM05D002859 ORTHO05D003120 6.4e-14 80.5 46 80.4
C07p38770 Brassica napus HOM05D002859 ORTHO05D003120 1.1e-13 79.7 46 80.4
Duzib264G1276 Durio zibethinus HOM05D002859 ORTHO05D003120 1.1e-13 79.7 45 80.0
Peaxi162Scf00760g00025 Petunia axillaris HOM05D002859 ORTHO05D003120 1.1e-13 79.7 43 83.7
MELO3C017029.2 Cucumis melo HOM05D002859 ORTHO05D003120 1.4e-13 79.3 46 80.4
CsaV3_4G037320 Cucumis sativus L. HOM05D002859 ORTHO05D003120 1.4e-13 79.3 46 80.4
Lj3A1079G49 Lonicera japonica HOM05D002859 ORTHO05D003120 1.4e-13 79.3 46 78.3
BcaB04g19538 Brassica carinata HOM05D002859 ORTHO05D003120 2.4e-13 78.6 46 78.3
BcaB04g19541 Brassica carinata HOM05D002859 ORTHO05D003120 2.4e-13 78.6 46 78.3
BcaB04g19542 Brassica carinata HOM05D002859 ORTHO05D003120 2.4e-13 78.6 46 78.3
BcaC04g23802 Brassica carinata HOM05D002859 ORTHO05D003120 2.4e-13 78.6 46 78.3
C09p04510 Brassica napus HOM05D002859 ORTHO05D003120 2.4e-13 78.6 46 78.3
BolC7t44396H Brassica oleracea HOM05D002859 ORTHO05D003120 2.4e-13 78.6 44 81.8
BolC9t53381H Brassica oleracea HOM05D002859 ORTHO05D003120 2.4e-13 78.6 46 78.3
FvH4_4g21981 Fragaria vesca HOM05D002859 ORTHO05D003120 2.4e-13 78.6 46 78.3
Gohir.A06G110404 Gossypium hirsutum HOM05D002859 ORTHO05D003120 2.4e-13 78.6 46 78.3
AL8G19860 Arabidopsis lyrata HOM05D002859 ORTHO05D003120 3.2e-13 78.2 44 79.5
AT5G47870 Arabidopsis thaliana HOM05D002859 ORTHO05D003120 3.2e-13 78.2 44 79.5
arahy.Tifrunner.gnm1.ann1.8K0JZH Arachis hypogaea HOM05D002859 ORTHO05D003120 3.2e-13 78.2 45 77.8
Migut.C00325 Erythranthe guttata HOM05D002859 ORTHO05D003120 3.2e-13 78.2 46 78.3
Thhalv10004932m.g Eutrema salsugineum HOM05D002859 ORTHO05D003120 3.2e-13 78.2 46 80.4
Hma1.2p1_0562F.1_g179040 Hydrangea macrophylla HOM05D002859 ORTHO05D003120 3.2e-13 78.2 46 78.3
Phvul.007G000200 Phaseolus vulgaris HOM05D002859 ORTHO05D003120 3.2e-13 78.2 46 78.3
unitig_749.g13863 Utricularia gibba HOM05D002859 ORTHO05D003120 3.2e-13 78.2 46 76.1
CARHR184440 Cardamine hirsuta HOM05D002859 ORTHO05D003120 4.2e-13 77.8 46 78.3
Cpa.g.sc125.35 Carica papaya HOM05D002859 ORTHO05D003120 4.2e-13 77.8 46 78.3
Nn3g16168 Nelumbo nucifera HOM05D002859 ORTHO05D003120 4.2e-13 77.8 45 75.6
Eucgr.B03576 Eucalyptus grandis HOM05D002859 ORTHO05D003120 5.4e-13 77.4 46 76.1
Gohir.D06G123600 Gossypium hirsutum HOM05D002859 ORTHO05D003120 7.1e-13 77.0 45 77.8
Gorai.010G143800 Gossypium raimondii HOM05D002859 ORTHO05D003120 7.1e-13 77.0 45 77.8
Manes.08G097900 Manihot esculenta HOM05D002859 ORTHO05D003120 7.1e-13 77.0 46 78.3
Potri.003G158500 Populus trichocarpa HOM05D002859 ORTHO05D003120 7.1e-13 77.0 45 80.0
PGR119G1480 Punica granatum HOM05D002859 ORTHO05D003120 7.1e-13 77.0 46 80.4
TAR622G0268 Trochodendron aralioides HOM05D002859 ORTHO05D003120 7.1e-13 77.0 45 80.0
C07p05140 Brassica napus HOM05D002859 ORTHO05D003120 9.3e-13 76.6 46 80.4
BolC7t40912H Brassica oleracea HOM05D002859 ORTHO05D003120 9.3e-13 76.6 46 80.4
Prupe.1G209900 Prunus persica HOM05D002859 ORTHO05D003120 9.3e-13 76.6 46 76.1
Rhsim12G0090700 Rhododendron simsii HOM05D002859 ORTHO05D003120 9.3e-13 76.6 46 80.4
vmacro15978 Vaccinium macrocarpon HOM05D002859 ORTHO05D003120 9.3e-13 76.6 46 80.4
Aqoxy5G02902 Aquilegia oxysepala HOM05D002859 ORTHO05D003120 1.2e-12 76.3 45 80.0
BcaC04g18597 Brassica carinata HOM05D002859 ORTHO05D003120 1.2e-12 76.3 47 76.6
Cc11_g14830 Coffea canephora HOM05D002859 ORTHO05D003120 1.2e-12 76.3 44 77.3
Solyc11g040110.2 Solanum lycopersicum HOM05D002859 ORTHO05D003120 1.2e-12 76.3 43 81.4
Sopen11g017270 Solanum pennellii HOM05D002859 ORTHO05D003120 1.2e-12 76.3 43 81.4
unitig_26.g9853 Utricularia gibba HOM05D002859 ORTHO05D003120 1.2e-12 76.3 46 78.3
VMungo0720G1303 Vigna mungo HOM05D002859 ORTHO05D003120 1.2e-12 76.3 46 78.3
THA.LOC104801415 Tarenaya hassleriana HOM05D002859 ORTHO05D003120 1.6e-12 75.9 46 76.1
Duzib147G0632 Durio zibethinus HOM05D002859 ORTHO05D003120 2.1e-12 75.5 44 79.5
LjContig00470g0013393 Lotus japonicus HOM05D002859 ORTHO05D003120 2.1e-12 75.5 45 73.3
CDE02G1285 Ceratophyllum demersum HOM05D002859 ORTHO05D003120 2.7e-12 75.1 45 77.8
Eucgr.J01700 Eucalyptus grandis HOM05D002859 ORTHO05D003120 2.7e-12 75.1 44 75.0
Lalb_Chr02g0144701 Lupinus albus HOM05D002859 ORTHO05D003120 2.7e-12 75.1 45 75.6
Aa31LG3G14170 Aethionema arabicum HOM05D002859 ORTHO05D003120 3.5e-12 74.7 46 76.1
ATR0582G250 Amborella trichopoda HOM05D002859 ORTHO05D003120 3.5e-12 74.7 45 73.3
AUR62005721 Chenopodium quinoa HOM05D002859 ORTHO05D003120 3.5e-12 74.7 46 78.3
AUR62032914 Chenopodium quinoa HOM05D002859 ORTHO05D003120 3.5e-12 74.7 46 78.3
ECA246G3705 Erigeron canadensis HOM05D002859 ORTHO05D003120 3.5e-12 74.7 47 78.7
Glyma.20G249700 Glycine max HOM05D002859 ORTHO05D003120 3.5e-12 74.7 45 75.6
Nitab4.5_0007261g0050 Nicotiana tabacum HOM05D002859 ORTHO05D003120 3.5e-12 74.7 43 81.4
PGSC0003DMG400027997 Solanum tuberosum HOM05D002859 ORTHO05D003120 3.5e-12 74.7 43 79.1
C09p57160 Brassica napus HOM05D002859 ORTHO05D003120 6.0e-12 73.9 45 77.8
Gohir.A09G003000 Gossypium hirsutum HOM05D002859 ORTHO05D003120 6.0e-12 73.9 45 75.6
Nitab4.5_0002113g0060 Nicotiana tabacum HOM05D002859 ORTHO05D003120 7.9e-12 73.6 43 79.1
Gohir.D09G002800 Gossypium hirsutum HOM05D002859 ORTHO05D003120 1.0e-11 73.2 45 75.6
Gorai.006G003500 Gossypium raimondii HOM05D002859 ORTHO05D003120 1.0e-11 73.2 45 75.6
Medtr6g004130 Medicago truncatula HOM05D002859 ORTHO05D003120 1.3e-11 72.8 45 73.3
AUR62028836 Chenopodium quinoa HOM05D002859 ORTHO05D003120 1.8e-11 72.4 44 77.3
HanXRQChr06g0175341 Helianthus annuus HOM05D002859 ORTHO05D003120 2.3e-11 72.0 47 74.5
A09p04270 Brassica napus HOM05D002859 ORTHO05D003120 3.9e-11 71.2 46 73.9
EL10Ac6g13615 Beta vulgaris HOM05D002859 ORTHO05D003120 5.1e-11 70.9 44 75.0
HPP92_001279 Vanilla planifolia HOM05D002859 ORTHO05D003120 5.1e-11 70.9 45 71.1
BraA09t36064Z Brassica rapa HOM05D002859 ORTHO05D003120 6.7e-11 70.5 47 72.3
Ca_04133_v3 Cicer arietinum L. HOM05D002859 ORTHO05D003120 6.7e-11 70.5 45 71.1
Psat1g053360 Pisum sativum HOM05D002859 ORTHO05D003120 8.7e-11 70.1 45 68.9
HPP92_007177 Vanilla planifolia HOM05D002859 ORTHO05D003120 1.1e-10 69.7 45 68.9
Ah.02g131400 Amaranthus hybridus HOM05D002859 ORTHO05D003120 1.5e-10 69.3 44 72.7
PSO017G4346 Papaver somniferum HOM05D002859 ORTHO05D003120 1.5e-10 69.3 45 68.9
PSO478G1678 Papaver somniferum HOM05D002859 ORTHO05D003120 1.5e-10 69.3 45 68.9
Ah.03g135470 Amaranthus hybridus HOM05D002859 ORTHO05D003120 2.5e-10 68.6 44 75.0
Sabra03G0114900 Salix brachista HOM05D002859 ORTHO05D003120 3.3e-10 68.2 43 74.4
FAN17G0984 Fragaria x ananassa HOM05D002859 ORTHO05D003120 9.6e-10 66.6 38 78.9
Lsat_1_v5_gn_3_33360 Lactuca sativa HOM05D002859 ORTHO05D003120 1.6e-09 65.9 43 76.7
Os03g0851500 Oryza sativa ssp. japonica HOM05D002859 ORTHO05D003120 2.1e-09 65.5 44 65.9
FAN12G0831 Fragaria x ananassa HOM05D005616 ORTHO05D006975 8.1e-09 63.5 38 76.3
SEGI_07111 Sequoiadendron giganteum HOM05D002859 ORTHO05D003120 8.1e-09 63.5 45 64.4
Zm00001eb064620 Zea mays HOM05D002859 ORTHO05D003120 8.1e-09 63.5 44 63.6
CDE02G4248 Ceratophyllum demersum HOM05D002859 ORTHO05D003120 1.1e-08 63.2 44 65.9
Zm00001eb318170 Zea mays HOM05D002859 ORTHO05D003120 1.8e-08 62.4 53 56.6
Os09g0512800 Oryza sativa ssp. japonica HOM05D002859 ORTHO05D003120 2.4e-08 62.0 45 64.4
DCAR_024637 Daucus carota HOM05D001551 ORTHO05D003120 6.9e-08 60.5 38 71.1
SEGI_35848 Sequoiadendron giganteum HOM05D002859 ORTHO05D003120 1.2e-07 59.7 45 64.4
TWI12G1452 Tripterygium wilfordii HOM05D002859 ORTHO05D003120 2.0e-07 58.9 60 51.7
Mapoly0077s0052 Marchantia polymorpha HOM05D002859 ORTHO05D003120 4.5e-07 57.8 45 62.2
SEGI_41282 Sequoiadendron giganteum HOM05D002859 ORTHO05D003120 7.6e-07 57.0 45 55.6
Sabra19G0082000 Salix brachista HOM05D002859 ORTHO05D003120 9.9e-07 56.6 44 61.4
Cpa.g.sc249.14 Carica papaya HOM05D002859 ORTHO05D003120 1.3e-06 56.2 44 61.4
Medtr4g035350 Medicago truncatula HOM05D002859 ORTHO05D003120 1.3e-06 56.2 43 62.8
GSVIVG01037132001 Vitis vinifera HOM05D002859 ORTHO05D003120 2.2e-06 55.5 44 61.4
COL.COLO4_25054 Corchorus olitorius HOM05D002859 ORTHO05D003120 2.9e-06 55.1 44 61.4
Lj7C415G9 Lonicera japonica HOM05D002859 ORTHO05D003120 2.9e-06 55.1 52 53.8
Manes.05G123347 Manihot esculenta HOM05D002859 ORTHO05D003120 2.9e-06 55.1 44 59.1
TPR.G25997 Trifolium pratense HOM05D002859 ORTHO05D003120 2.9e-06 55.1 44 61.4
Oeu028619.1 Olea europaea HOM05D002859 ORTHO05D003120 3.8e-06 54.7 44 59.1
Pp3c1_32560 Physcomitrium patens HOM05D002859 ORTHO05D003120 3.8e-06 54.7 45 60.0
Ca_25698_v3 Cicer arietinum L. HOM05D002859 ORTHO05D003120 4.9e-06 54.3 43 62.8
HanXRQChr09g0266881 Helianthus annuus HOM05D002859 ORTHO05D003120 4.9e-06 54.3 43 62.8
Psat7g149800 Pisum sativum HOM05D002859 ORTHO05D003120 4.9e-06 54.3 43 62.8
DCAR_014056 Daucus carota HOM05D002859 ORTHO05D003120 6.4e-06 53.9 44 65.9
Atru.chr13.2591 Acer truncatum HOM05D002859 ORTHO05D003120 8.4e-06 53.5 44 59.1
Haze_14010 Corylus avellana HOM05D002859 ORTHO05D003120 8.4e-06 53.5 43 60.5
Duzib177G0860 Durio zibethinus HOM05D002859 ORTHO05D003120 8.4e-06 53.5 44 59.1
Migut.C01404 Erythranthe guttata HOM05D002859 ORTHO05D003120 8.4e-06 53.5 43 60.5
Gohir.A02G088200 Gossypium hirsutum HOM05D002859 ORTHO05D003120 8.4e-06 53.5 44 59.1
Gohir.D02G103500 Gossypium hirsutum HOM05D002859 ORTHO05D003120 8.4e-06 53.5 44 59.1
Gorai.005G117600 Gossypium raimondii HOM05D002859 ORTHO05D003120 8.4e-06 53.5 44 59.1
Lj3g0004795 Lotus japonicus HOM05D002859 ORTHO05D003120 8.4e-06 53.5 43 60.5
Potri.019G068500 Populus trichocarpa HOM05D002859 ORTHO05D003120 8.4e-06 53.5 44 59.1
Prupe.8G001500 Prunus persica HOM05D002859 ORTHO05D003120 8.4e-06 53.5 43 60.5
Thecc.08G165600 Theobroma cacao HOM05D002859 ORTHO05D003120 8.4e-06 53.5 44 59.1
vmacro00921 Vaccinium macrocarpon HOM05D002859 ORTHO05D003120 8.4e-06 53.5 47 55.3
vmacro00954 Vaccinium macrocarpon HOM05D002859 ORTHO05D003120 8.4e-06 53.5 47 55.3


User provided reference genes

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