Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0039030 Camellia sinensis var. sinensis HOM05D006573 ORTHO05D008073 3.6e-266 921.0 458 100.0
CSS0006565 Camellia sinensis var. sinensis HOM05D006573 ORTHO05D008073 4.3e-251 870.9 474 93.0
Actinidia06814 Actinidia chinensis HOM05D006573 ORTHO05D008073 8.4e-207 723.8 480 76.9
Dinv19279 Davidia involucrata HOM05D006573 ORTHO05D008073 1.8e-196 689.5 479 73.5
Hma1.2p1_0123F.1_g058030 Hydrangea macrophylla HOM05D006573 ORTHO05D008073 2.2e-191 672.5 479 71.8
GSVIVG01026405001 Vitis vinifera HOM05D006573 ORTHO05D008073 1.1e-182 643.7 437 74.4
TAR362G0441 Trochodendron aralioides HOM05D006573 ORTHO05D008073 5.7e-179 631.3 485 69.9
vmacro12852 Vaccinium macrocarpon HOM05D006573 ORTHO05D008073 4.5e-176 621.7 568 60.7
Prupe.6G356100 Prunus persica HOM05D006573 ORTHO05D008073 3.8e-175 618.6 483 66.5
RcHm_v2.0_Chr3g0448661 Rosa chinensis HOM05D006573 ORTHO05D008073 1.2e-173 613.6 484 66.1
Thecc.05G259800 Theobroma cacao HOM05D006573 ORTHO05D008073 2.3e-172 609.4 456 68.9
Manes.09G144600 Manihot esculenta HOM05D006573 ORTHO05D008073 3.9e-172 608.6 443 68.8
Duzib177G1122 Durio zibethinus HOM05D006573 ORTHO05D008073 8.8e-172 607.4 490 66.5
Ciclev10019925m.g Citrus clementina HOM05D006573 ORTHO05D008073 1.5e-171 606.7 443 68.4
Rhsim10G0138000 Rhododendron simsii HOM05D006573 ORTHO05D008073 3.3e-171 605.5 469 68.9
FAN05G2122 Fragaria x ananassa HOM05D006573 ORTHO05D008073 4.4e-171 605.1 488 65.4
FAN05G3303 Fragaria x ananassa HOM05D006573 ORTHO05D008073 5.7e-171 604.7 488 66.2
Potri.013G053100 Populus trichocarpa HOM05D006573 ORTHO05D008073 7.4e-171 604.4 437 70.9
Cc09_g03200 Coffea canephora HOM05D006573 ORTHO05D008073 2.8e-170 602.4 487 65.9
PGSC0003DMG400010688 Solanum tuberosum HOM05D006573 ORTHO05D008073 2.8e-170 602.4 441 70.1
Nn1g07946 Nelumbo nucifera HOM05D006573 ORTHO05D008073 4.8e-170 601.7 445 69.9
FAN14G5930 Fragaria x ananassa HOM05D006573 ORTHO05D008073 8.2e-170 600.9 492 65.2
CAN.G29.20 Capsicum annuum HOM05D006573 ORTHO05D008073 1.1e-169 600.5 441 69.8
FvH4_6g01130 Fragaria vesca HOM05D006573 ORTHO05D008073 1.8e-169 599.7 492 65.0
FAN09G4254 Fragaria x ananassa HOM05D006573 ORTHO05D008073 1.8e-169 599.7 492 65.2
THA.LOC104805797 Tarenaya hassleriana HOM05D006573 ORTHO05D008073 2.4e-169 599.4 454 67.8
Nitab4.5_0000344g0030 Nicotiana tabacum HOM05D006573 ORTHO05D008073 4.1e-169 598.6 441 69.2
MD12G1255200 Malus domestica HOM05D006573 ORTHO05D008073 5.3e-169 598.2 473 66.2
Eucgr.B02180 Eucalyptus grandis HOM05D006573 ORTHO05D008073 6.9e-169 597.8 426 70.9
Gohir.D11G250400 Gossypium hirsutum HOM05D006573 ORTHO05D008073 1.5e-168 596.7 456 66.9
Gorai.007G268500 Gossypium raimondii HOM05D006573 ORTHO05D008073 1.5e-168 596.7 456 66.9
Cpa.g.sc51.78 Carica papaya HOM05D006573 ORTHO05D008073 1.0e-167 594.0 430 71.4
Sopen04g022050 Solanum pennellii HOM05D006573 ORTHO05D008073 1.0e-167 594.0 441 68.7
Sabra13G0048100 Salix brachista HOM05D006573 ORTHO05D008073 2.2e-167 592.8 479 66.0
Solyc04g050930.3 Solanum lycopersicum HOM05D006573 ORTHO05D008073 3.8e-167 592.0 441 68.5
Haze_04495 Corylus avellana HOM05D006573 ORTHO05D008073 6.5e-167 591.3 364 78.6
CANSAT21G0678 Cannabis sativa HOM05D006573 ORTHO05D008073 8.5e-167 590.9 442 69.2
Nitab4.5_0012098g0010 Nicotiana tabacum HOM05D006573 ORTHO05D008073 1.9e-166 589.7 437 69.3
Atru.chr2.1254 Acer truncatum HOM05D006573 ORTHO05D008073 1.8e-164 583.2 440 67.7
Aa31sc20G120 Aethionema arabicum HOM05D006573 ORTHO05D008073 4.4e-163 578.6 386 72.5
Lj2A405T39 Lonicera japonica HOM05D006573 ORTHO05D008073 4.8e-162 575.1 377 74.8
Sc09g0001730 Simmondsia chinensis HOM05D006573 ORTHO05D008073 4.8e-162 575.1 433 67.9
A06p05540 Brassica napus HOM05D006573 ORTHO05D008073 3.1e-161 572.4 391 71.6
Thhalv10007587m.g Eutrema salsugineum HOM05D006573 ORTHO05D008073 3.1e-161 572.4 391 71.9
Lj1g0015745 Lotus japonicus HOM05D006573 ORTHO05D008073 4.1e-161 572.0 366 75.7
C05p06650 Brassica napus HOM05D006573 ORTHO05D008073 5.3e-161 571.6 391 71.4
MBI11_g07442_MAGBIO Magnolia biondii HOM05D006573 ORTHO05D008073 5.3e-161 571.6 456 64.3
BraA06t23762Z Brassica rapa HOM05D006573 ORTHO05D008073 7.0e-161 571.2 391 71.4
Sp1g07210 Schrenkiella parvula HOM05D006573 ORTHO05D008073 9.1e-161 570.9 391 71.6
BolC5t29425H Brassica oleracea HOM05D006573 ORTHO05D008073 2.0e-160 569.7 391 71.1
CARHR008450 Cardamine hirsuta HOM05D006573 ORTHO05D008073 4.5e-160 568.5 369 74.3
Medtr7g116630 Medicago truncatula HOM05D006573 ORTHO05D008073 4.5e-160 568.5 371 74.7
DCAR_013654 Daucus carota HOM05D006573 ORTHO05D008073 5.9e-160 568.2 475 63.2
AL1G18980 Arabidopsis lyrata HOM05D006573 ORTHO05D008073 1.3e-159 567.0 392 71.4
AUR62000660 Chenopodium quinoa HOM05D006573 ORTHO05D008073 1.7e-159 566.6 494 61.9
Oeu054601.1 Olea europaea HOM05D006573 ORTHO05D008073 1.7e-159 566.6 477 62.7
PSO017G7064 Papaver somniferum HOM05D006573 ORTHO05D008073 1.7e-159 566.6 491 61.5
Glyma.03G253500 Glycine max HOM05D006573 ORTHO05D008073 2.2e-159 566.2 443 65.7
CiPaw.07G075700 Carya illinoinensis HOM05D006573 ORTHO05D008073 2.9e-159 565.8 480 62.7
Glyma.19G251000 Glycine max HOM05D006573 ORTHO05D008073 2.9e-159 565.8 443 66.1
PSO063G7541 Papaver somniferum HOM05D006573 ORTHO05D008073 3.8e-159 565.5 489 60.7
AUR62005294 Chenopodium quinoa HOM05D006573 ORTHO05D008073 5.0e-159 565.1 421 68.9
Lalb_Chr18g0044221 Lupinus albus HOM05D006573 ORTHO05D008073 5.0e-159 565.1 402 69.7
ATR0069G016 Amborella trichopoda HOM05D006573 ORTHO05D008073 1.1e-158 563.9 362 77.1
ECA248G2645 Erigeron canadensis HOM05D006573 ORTHO05D008073 1.5e-158 563.5 498 59.6
TPR.G4727 Trifolium pratense HOM05D006573 ORTHO05D008073 3.2e-158 562.4 414 68.8
VMungo0540G0667 Vigna mungo HOM05D006573 ORTHO05D008073 3.2e-158 562.4 445 65.2
HanXRQChr13g0406621 Helianthus annuus HOM05D006573 ORTHO05D008073 1.0e-156 557.4 484 60.5
Lj2A407T38 Lonicera japonica HOM05D006573 ORTHO05D008073 1.4e-156 557.0 380 73.2
Aqoxy2G03898 Aquilegia oxysepala HOM05D006573 ORTHO05D008073 1.8e-156 556.6 445 64.0
Ca_09476_v3 Cicer arietinum L. HOM05D006573 ORTHO05D008073 3.0e-156 555.8 392 69.9
SGA_v2.0_scaffold13G06342 Striga asiatica HOM05D006573 ORTHO05D008073 4.0e-156 555.4 415 67.7
EL10Ac4g09803 Beta vulgaris HOM05D006573 ORTHO05D008073 5.2e-156 555.1 483 61.3
TWI34G1215 Tripterygium wilfordii HOM05D006573 ORTHO05D008073 5.2e-156 555.1 481 60.1
Peaxi162Scf01011g00215 Petunia axillaris HOM05D006573 ORTHO05D008073 1.5e-155 553.5 440 66.4
Phvul.006G108200 Phaseolus vulgaris HOM05D006573 ORTHO05D008073 2.6e-155 552.7 396 69.7
arahy.Tifrunner.gnm1.ann1.ZGZX3T Arachis hypogaea HOM05D006573 ORTHO05D008073 3.3e-155 552.4 364 73.4
arahy.Tifrunner.gnm1.ann1.L0KK3Q Arachis hypogaea HOM05D006573 ORTHO05D008073 7.5e-155 551.2 364 73.6
Gohir.A11G241000 Gossypium hirsutum HOM05D006573 ORTHO05D008073 7.5e-155 551.2 456 62.5
Lsat_1_v5_gn_7_62281 Lactuca sativa HOM05D006573 ORTHO05D008073 2.8e-154 549.3 481 60.3
AT1G08550 Arabidopsis thaliana HOM05D006573 ORTHO05D008073 3.7e-154 548.9 392 69.4
Migut.F02066 Erythranthe guttata HOM05D006573 ORTHO05D008073 2.4e-153 546.2 440 63.4
MSTRG.8177 Avicennia marina HOM05D006573 ORTHO05D008073 4.1e-153 545.4 408 67.9
CDE05G0683 Ceratophyllum demersum HOM05D006573 ORTHO05D008073 3.5e-152 542.3 366 71.3
Carub.0001s0791 Capsella rubella HOM05D006573 ORTHO05D008073 7.7e-152 541.2 370 71.9
BcaB07g34098 Brassica carinata HOM05D006573 ORTHO05D008073 7.2e-150 534.6 391 68.5
HPP92_020222 Vanilla planifolia HOM05D001545 ORTHO05D001600 1.6e-149 533.5 366 69.9
Psat3g005000 Pisum sativum HOM05D006573 ORTHO05D008073 2.8e-146 522.7 366 69.7
Ah.06g188810 Amaranthus hybridus HOM05D006573 ORTHO05D008073 4.5e-144 515.4 365 71.0
Zm00001eb085840 Zea mays HOM05D006573 ORTHO05D008073 1.3e-143 513.8 427 60.9
Hund07152 Selenicereus undatus HOM05D006573 ORTHO05D008073 3.0e-140 502.7 364 69.0
CsaV3_2G010250 Cucumis sativus L. HOM05D006573 ORTHO05D008073 5.4e-137 491.9 329 71.4
ClCG11G010060 Citrullus lanatus HOM05D006573 ORTHO05D008073 3.5e-136 489.2 346 68.5
Sed0012720 Sechium edule HOM05D006573 ORTHO05D008073 4.5e-136 488.8 445 57.8
MELO3C008677.2 Cucumis melo HOM05D006573 ORTHO05D008073 1.0e-135 487.6 471 56.1
SEGI_03231 Sequoiadendron giganteum HOM05D006573 ORTHO05D008073 3.4e-131 472.6 366 63.7
Mapoly0111s0023 Marchantia polymorpha HOM05D006573 ORTHO05D008073 4.1e-129 465.7 370 63.2
SalBow1G0293 Salvia bowleyana HOM05D006573 ORTHO05D008073 4.1e-129 465.7 427 57.6
SalBow1G2715 Salvia bowleyana HOM05D006573 ORTHO05D008073 1.6e-128 463.8 427 57.4
COL.COLO4_20557 Corchorus olitorius HOM05D006573 ORTHO05D008073 4.3e-126 455.7 272 78.7
Hma1.2p1_0123F.1_g058020 Hydrangea macrophylla HOM05D006573 ORTHO05D008073 5.8e-123 445.3 311 71.4
AagrBONN_evm.TU.Sc2ySwM_228.1660 Anthoceros agrestis HOM05D006573 ORTHO05D008073 2.0e-120 436.8 372 58.9
SMO270G0104 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 1.5e-115 420.6 329 62.6
Pp3c3_13220 Physcomitrium patens HOM05D006573 ORTHO05D008073 2.3e-111 406.8 413 53.3
CBR_g38554 Chara braunii HOM05D006573 ORTHO05D008073 6.2e-109 398.7 353 56.1
Lj2C408T2 Lonicera japonica HOM05D006573 ORTHO05D008073 2.7e-104 383.3 365 59.2
SEGI_19143 Sequoiadendron giganteum HOM05D006573 ORTHO05D008073 7.6e-99 365.2 274 60.6
CDE05G0621 Ceratophyllum demersum HOM05D006573 ORTHO05D008073 8.4e-98 361.7 245 68.6
unitig_46.g17980 Utricularia gibba HOM05D006573 ORTHO05D008073 1.3e-90 337.8 203 75.4
Os04g0379700 Oryza sativa ssp. japonica HOM05D006573 ORTHO05D008073 2.1e-88 330.5 244 66.4
PGSC0003DMG400010690 Solanum tuberosum HOM05D006573 ORTHO05D008073 9.0e-84 315.1 230 66.5
MCO16G084 Micromonas commoda HOM05D006573 ORTHO05D008073 3.2e-65 253.4 313 44.1
SMO334G0031 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 1.1e-62 245.0 204 55.4
SMO297G0027 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 7.4e-62 242.3 204 54.9
SMO297G0014 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 2.8e-61 240.4 204 54.9
SMO270G0143 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 1.1e-60 238.4 204 53.4
PRCOL_00001224 Prasinoderma coloniale HOM05D006573 ORTHO05D008073 9.1e-60 235.3 299 42.1
PGSC0003DMG400020993 Solanum tuberosum HOM05D006573 ORTHO05D008073 1.7e-42 177.9 204 47.1
unitig_46.g17981 Utricularia gibba HOM05D006573 ORTHO05D008073 3.0e-39 167.2 141 66.0
SMO266G0012 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 1.9e-25 121.3 95 56.8
Haze_04503 Corylus avellana HOM05D006573 ORTHO05D008073 5.9e-19 99.8 93 66.7
Haze_04505 Corylus avellana HOM05D006573 ORTHO05D008073 2.0e-14 84.7 84 64.3
QL93p0249_0008 Quercus lobata HOM05D006573 ORTHO05D008073 2.0e-14 84.7 132 43.2
ATR1120G154 Amborella trichopoda HOM05D006367 ORTHO05D007942 3.7e-13 80.5 270 23.3
RcHm_v2.0_Chr2g0117401 Rosa chinensis HOM05D006367 ORTHO05D007942 4.9e-13 80.1 300 22.0
RcHm_v2.0_Chr2g0117441 Rosa chinensis HOM05D006367 ORTHO05D007942 4.9e-13 80.1 300 22.0
AagrBONN_evm.TU.Sc2ySwM_344.2769 Anthoceros agrestis HOM05D006367 ORTHO05D007942 1.1e-12 79.0 410 23.2
RcHm_v2.0_Chr2g0117461 Rosa chinensis HOM05D006367 ORTHO05D007942 2.4e-12 77.8 301 22.9
FAN19G1918 Fragaria x ananassa HOM05D006367 ORTHO05D007942 3.2e-12 77.4 300 22.0
Nn5g28853 Nelumbo nucifera HOM05D006367 ORTHO05D007942 3.2e-12 77.4 275 23.6
FvH4_1g22940 Fragaria vesca HOM05D006367 ORTHO05D007942 4.1e-12 77.0 303 23.4
THA.LOC104807726 Tarenaya hassleriana HOM05D006367 ORTHO05D007942 1.2e-11 75.5 279 23.7
FAN23G0352 Fragaria x ananassa HOM05D006367 ORTHO05D007942 2.0e-11 74.7 301 21.6
Hma1.2p1_0696F.1_g204660 Hydrangea macrophylla HOM05D006367 ORTHO05D007942 3.5e-11 73.9 274 23.4
AUR62040525 Chenopodium quinoa HOM05D006367 ORTHO05D007942 1.3e-10 72.0 265 21.1
Pp3c8_810 Physcomitrium patens HOM05D006367 ORTHO05D007942 1.3e-10 72.0 282 23.0
Hund02300 Selenicereus undatus HOM05D006367 ORTHO05D007942 1.3e-10 72.0 272 21.0
CANSAT21G2601 Cannabis sativa HOM05D006367 ORTHO05D007942 2.3e-10 71.2 267 22.5
CDE04G0187 Ceratophyllum demersum HOM05D006367 ORTHO05D007942 2.3e-10 71.2 274 22.3
Zm00001eb361490 Zea mays HOM05D006367 ORTHO05D007942 3.9e-10 70.5 286 20.6
Carub.0004s0089 Capsella rubella HOM05D006367 ORTHO05D007942 6.6e-10 69.7 272 22.8
CBR_g8843 Chara braunii HOM05D006367 ORTHO05D007942 8.6e-10 69.3 268 23.9
Os01g0716400 Oryza sativa ssp. japonica HOM05D006367 ORTHO05D007942 8.6e-10 69.3 267 22.8
AT2G21860 Arabidopsis thaliana HOM05D006367 ORTHO05D007942 1.5e-09 68.6 272 22.8
Prupe.6G168900 Prunus persica HOM05D006367 ORTHO05D007942 1.9e-09 68.2 277 22.7
CARHR112860 Cardamine hirsuta HOM05D006367 ORTHO05D007942 2.5e-09 67.8 271 22.5
AUR62039784 Chenopodium quinoa HOM05D006367 ORTHO05D007942 2.5e-09 67.8 257 20.6
EL10Ac7g17324 Beta vulgaris HOM05D006367 ORTHO05D007942 5.6e-09 66.6 243 21.4
CDE06G2209 Ceratophyllum demersum HOM05D006367 ORTHO05D007942 9.5e-09 65.9 295 23.1
MD10G1028700 Malus domestica HOM05D006367 ORTHO05D007942 9.5e-09 65.9 251 22.3
Lj4P863T60 Lonicera japonica HOM05D006367 ORTHO05D007942 1.2e-08 65.5 270 23.0
Migut.H02447 Erythranthe guttata HOM05D006367 ORTHO05D007942 3.6e-08 63.9 164 23.8
Ah.15g092040 Amaranthus hybridus HOM05D006367 ORTHO05D007942 1.4e-07 62.0 230 21.7


User provided reference genes

Program Settings