Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0039018 Camellia sinensis var. sinensis HOM05D001891 ORTHO05D004048 2.9e-55 218.4 116 100.0
CSS0016042 Camellia sinensis var. sinensis HOM05D001891 ORTHO05D004048 2.9e-47 191.8 116 92.2
CSS0035637 Camellia sinensis var. sinensis HOM05D001891 ORTHO05D004048 2.9e-47 191.8 116 92.2
CSS0024189 Camellia sinensis var. sinensis HOM05D001891 ORTHO05D004048 5.3e-41 171.0 118 83.9
CSS0049956 Camellia sinensis var. sinensis HOM05D001891 ORTHO05D004048 5.5e-30 134.4 119 71.4
Dinv18531 Davidia involucrata HOM05D001891 ORTHO05D004048 1.6e-29 132.9 118 67.8
Actinidia12501 Actinidia chinensis HOM05D001891 ORTHO05D004048 6.1e-29 131.0 118 68.6
Hma1.2p1_0613F.1_g189170 Hydrangea macrophylla HOM05D001891 ORTHO05D004048 3.9e-28 128.3 119 67.2
Actinidia32079 Actinidia chinensis HOM05D001891 ORTHO05D004048 1.1e-27 126.7 118 68.6
Dinv39686 Davidia involucrata HOM05D001891 ORTHO05D004048 1.5e-27 126.3 119 66.4
Actinidia30510 Actinidia chinensis HOM05D001891 ORTHO05D004048 2.0e-27 125.9 128 65.6
CiPaw.03G163000 Carya illinoinensis HOM05D001891 ORTHO05D004048 4.4e-27 124.8 119 65.5
Prupe.3G220500 Prunus persica HOM05D001891 ORTHO05D004048 4.4e-27 124.8 114 67.5
QL08p033836 Quercus lobata HOM05D001891 ORTHO05D004048 4.4e-27 124.8 119 66.4
Peaxi162Scf00007g01230 Petunia axillaris HOM05D001891 ORTHO05D004048 7.4e-27 124.0 118 63.6
Solyc07g052600.3 Solanum lycopersicum HOM05D001891 ORTHO05D004048 7.4e-27 124.0 119 63.9
CANSAT64G0421 Cannabis sativa HOM05D001891 ORTHO05D004048 9.7e-27 123.6 114 64.0
Cfa014439 Carpinus fangiana HOM05D001891 ORTHO05D005832 1.3e-26 123.2 114 69.3
CiPaw.04G117900 Carya illinoinensis HOM05D001891 ORTHO05D004048 1.3e-26 123.2 115 66.1
MD17G1092700 Malus domestica HOM05D001891 ORTHO05D004048 1.3e-26 123.2 114 66.7
Nitab4.5_0006207g0030 Nicotiana tabacum HOM05D001891 ORTHO05D004048 2.2e-26 122.5 121 62.0
Sopen07g026210 Solanum pennellii HOM05D001891 ORTHO05D004048 2.8e-26 122.1 119 63.0
MD09G1105000 Malus domestica HOM05D001891 ORTHO05D004048 3.7e-26 121.7 114 65.8
arahy.Tifrunner.gnm1.ann1.6C63SS Arachis hypogaea HOM05D001891 ORTHO05D004048 4.8e-26 121.3 120 64.2
arahy.Tifrunner.gnm1.ann1.MDYX4P Arachis hypogaea HOM05D001891 ORTHO05D004048 4.8e-26 121.3 120 64.2
TAR627G0099 Trochodendron aralioides HOM05D001891 ORTHO05D004048 4.8e-26 121.3 114 65.8
GSVIVG01030625001 Vitis vinifera HOM05D001891 ORTHO05D004048 4.8e-26 121.3 119 64.7
DCAR_019211 Daucus carota HOM05D001891 ORTHO05D004048 8.2e-26 120.6 116 63.8
Haze_12898 Corylus avellana HOM05D001891 ORTHO05D004048 1.1e-25 120.2 114 67.5
CAN.G921.6 Capsicum annuum HOM05D001891 ORTHO05D004048 1.4e-25 119.8 119 63.0
Ca_27743_v3 Cicer arietinum L. HOM05D001891 ORTHO05D004048 1.4e-25 119.8 119 62.2
Cc05_g05140 Coffea canephora HOM05D001891 ORTHO05D004048 1.4e-25 119.8 118 61.0
Lj3g0010899 Lotus japonicus HOM05D001891 ORTHO05D004048 1.4e-25 119.8 119 65.5
arahy.Tifrunner.gnm1.ann1.NX9XDZ Arachis hypogaea HOM05D001891 ORTHO05D004048 2.4e-25 119.0 119 62.2
Glyma.12G195800 Glycine max HOM05D001891 ORTHO05D004048 3.1e-25 118.6 119 62.2
Lalb_Chr01g0005561 Lupinus albus HOM05D001891 ORTHO05D004048 3.1e-25 118.6 119 62.2
TAR629G3333 Trochodendron aralioides HOM05D001891 ORTHO05D004048 3.1e-25 118.6 114 64.0
HanXRQChr17g0560941 Helianthus annuus HOM05D001891 ORTHO05D004048 4.1e-25 118.2 119 60.5
VMungo1080G1612 Vigna mungo HOM05D001891 ORTHO05D004048 4.1e-25 118.2 119 62.2
RcHm_v2.0_Chr2g0160081 Rosa chinensis HOM05D001891 ORTHO05D004048 5.3e-25 117.9 114 64.0
Glyma.13G306700 Glycine max HOM05D001891 ORTHO05D004048 7.0e-25 117.5 121 60.3
Nitab4.5_0005894g0030 Nicotiana tabacum HOM05D001891 ORTHO05D009433 7.0e-25 117.5 119 62.2
Psat5g265320 Pisum sativum HOM05D001891 ORTHO05D004048 7.0e-25 117.5 119 62.2
Nn1g06995 Nelumbo nucifera HOM05D001891 ORTHO05D004048 9.1e-25 117.1 111 66.7
vmacro09324 Vaccinium macrocarpon HOM05D001891 ORTHO05D004048 9.1e-25 117.1 119 62.2
Nitab4.5_0001176g0130 Nicotiana tabacum HOM05D001891 ORTHO05D009433 1.6e-24 116.3 119 62.2
Thecc.02G162400 Theobroma cacao HOM05D001891 ORTHO05D004048 1.6e-24 116.3 119 63.0
FvH4_6g43550 Fragaria vesca HOM05D001891 ORTHO05D004048 2.6e-24 115.5 114 62.3
FAN14G5299 Fragaria x ananassa HOM05D001891 ORTHO05D005832 2.6e-24 115.5 114 62.3
Sabra17G0025800 Salix brachista HOM05D001891 ORTHO05D004048 4.5e-24 114.8 120 60.8
Manes.12G078400 Manihot esculenta HOM05D001891 ORTHO05D004048 5.9e-24 114.4 119 62.2
FAN09G3447 Fragaria x ananassa HOM05D001891 ORTHO05D004048 7.7e-24 114.0 114 61.4
Gorai.005G209300 Gossypium raimondii HOM05D001891 ORTHO05D004048 7.7e-24 114.0 120 61.7
Nitab4.5_0000631g0040 Nicotiana tabacum HOM05D001891 ORTHO05D004048 7.7e-24 114.0 118 60.2
Phvul.005G113600 Phaseolus vulgaris HOM05D001891 ORTHO05D004048 7.7e-24 114.0 119 59.7
TPR.G4167 Trifolium pratense HOM05D001891 ORTHO05D004048 1.0e-23 113.6 119 59.7
Ciclev10016204m.g Citrus clementina HOM05D001891 ORTHO05D004048 1.3e-23 113.2 118 61.0
Gohir.A03G163600 Gossypium hirsutum HOM05D001891 ORTHO05D004048 1.3e-23 113.2 119 61.3
Potri.017G038800 Populus trichocarpa HOM05D001891 ORTHO05D004048 1.3e-23 113.2 120 61.7
vmacro12228 Vaccinium macrocarpon HOM05D001891 ORTHO05D004048 1.7e-23 112.8 118 61.9
FAN02G0497 Fragaria x ananassa HOM05D001891 ORTHO05D005832 2.2e-23 112.5 114 60.5
Gohir.D02G187000 Gossypium hirsutum HOM05D001891 ORTHO05D004048 2.2e-23 112.5 119 61.3
DCAR_012959 Daucus carota HOM05D001891 ORTHO05D004048 2.9e-23 112.1 118 59.3
Cpa.g.sc8.236 Carica papaya HOM05D001891 ORTHO05D004048 5.0e-23 111.3 119 59.7
ClCG02G008440 Citrullus lanatus HOM05D001891 ORTHO05D004048 5.0e-23 111.3 120 58.3
Rhsim04G0056600 Rhododendron simsii HOM05D001891 ORTHO05D004048 5.0e-23 111.3 125 60.8
Sed0013568 Sechium edule HOM05D001891 ORTHO05D004048 5.0e-23 111.3 121 57.9
COL.COLO4_12984 Corchorus olitorius HOM05D001891 ORTHO05D005832 6.5e-23 110.9 119 57.1
Duzib052G0734 Durio zibethinus HOM05D001891 ORTHO05D004048 1.1e-22 110.2 119 60.5
Lj3g0025447 Lotus japonicus HOM05D001891 ORTHO05D004048 1.1e-22 110.2 120 59.2
Atru.chr6.3149 Acer truncatum HOM05D001891 ORTHO05D004048 1.5e-22 109.8 119 60.5
CAN.G80.19 Capsicum annuum HOM05D001891 ORTHO05D004048 1.5e-22 109.8 118 60.2
Lsat_1_v5_gn_8_129400 Lactuca sativa HOM05D001891 ORTHO05D004048 1.5e-22 109.8 119 58.0
Oeu011080.1 Olea europaea HOM05D001891 ORTHO05D004048 2.5e-22 109.0 121 58.7
Eucgr.K00861 Eucalyptus grandis HOM05D001891 ORTHO05D004048 3.2e-22 108.6 114 57.0
Lj1A756G86 Lonicera japonica HOM05D001891 ORTHO05D004048 3.2e-22 108.6 118 59.3
Oeu041959.1 Olea europaea HOM05D001891 ORTHO05D004048 3.2e-22 108.6 120 56.7
Gorai.008G149900 Gossypium raimondii HOM05D001891 ORTHO05D004048 1.2e-21 106.7 120 58.3
Lj8A122T60 Lonicera japonica HOM05D001891 ORTHO05D004048 1.2e-21 106.7 120 59.2
Duzib132G0769 Durio zibethinus HOM05D001891 ORTHO05D004048 2.7e-21 105.5 119 58.8
TWI18G0897 Tripterygium wilfordii HOM05D001891 ORTHO05D004048 2.7e-21 105.5 118 55.9
Medtr2g088850 Medicago truncatula HOM05D001891 ORTHO05D004048 3.6e-21 105.1 118 55.1
Gohir.D12G138400 Gossypium hirsutum HOM05D001891 ORTHO05D004048 4.7e-21 104.8 119 58.0
PGR142G0845 Punica granatum HOM05D001891 ORTHO05D004048 4.7e-21 104.8 116 59.5
Sabra07G0098300 Salix brachista HOM05D001891 ORTHO05D004048 4.7e-21 104.8 123 59.3
THA.LOC104808497 Tarenaya hassleriana HOM05D001891 ORTHO05D004048 4.7e-21 104.8 108 57.4
Gohir.A12G134800 Gossypium hirsutum HOM05D001891 ORTHO05D004048 6.1e-21 104.4 119 58.0
Sopen12g001680 Solanum pennellii HOM05D001891 ORTHO05D004048 6.1e-21 104.4 118 55.9
MSTRG.14154 Avicennia marina HOM05D001891 ORTHO05D004048 8.0e-21 104.0 119 56.3
Sed0022558 Sechium edule HOM05D001891 ORTHO05D004048 1.0e-20 103.6 120 55.8
Solyc12g005760.2 Solanum lycopersicum HOM05D001891 ORTHO05D004048 1.4e-20 103.2 120 55.8
MSTRG.12288 Avicennia marina HOM05D001891 ORTHO05D004048 1.8e-20 102.8 118 55.9
Hma1.2p1_0439F.1_g153260 Hydrangea macrophylla HOM05D001891 ORTHO05D004048 1.8e-20 102.8 117 56.4
CsaV3_2G035190 Cucumis sativus L. HOM05D001891 ORTHO05D004048 2.3e-20 102.4 120 55.0
SGA_v2.0_scaffold70G23420 Striga asiatica HOM05D001891 ORTHO05D004048 4.0e-20 101.7 118 53.4
TWI75G1691 Tripterygium wilfordii HOM05D001891 ORTHO05D004048 4.0e-20 101.7 119 58.0
Potri.007G121600 Populus trichocarpa HOM05D001891 ORTHO05D004048 6.8e-20 100.9 123 55.3
Lalb_Chr03g0028901 Lupinus albus HOM05D001891 ORTHO05D004048 8.8e-20 100.5 117 57.3
PSO675G1171 Papaver somniferum HOM05D001891 ORTHO05D004048 8.8e-20 100.5 114 56.1
ECA233G3416 Erigeron canadensis HOM05D000014 ORTHO05D000093 1.2e-19 100.1 116 56.0
THA.LOC104802537 Tarenaya hassleriana HOM05D001891 ORTHO05D004048 1.5e-19 99.8 118 51.7
Duzib248G1135 Durio zibethinus HOM05D001891 ORTHO05D004048 2.0e-19 99.4 119 55.5
HanXRQChr15g0479201 Helianthus annuus HOM05D001891 ORTHO05D004048 2.0e-19 99.4 119 51.3
PSO541G4560 Papaver somniferum HOM05D001891 ORTHO05D004048 2.0e-19 99.4 114 55.3
CsaV3_7G003770 Cucumis sativus L. HOM05D001891 ORTHO05D004048 3.4e-19 98.6 111 53.2
SGA_v2.0_scaffold49G18333 Striga asiatica HOM05D001891 ORTHO05D004048 3.4e-19 98.6 118 53.4
SalBow1G3276 Salvia bowleyana HOM05D001891 ORTHO05D004048 4.4e-19 98.2 118 53.4
Aa31LG8G8420 Aethionema arabicum HOM05D001891 ORTHO05D004048 5.7e-19 97.8 120 55.0
MELO3C018802.2 Cucumis melo HOM05D001891 ORTHO05D004048 9.7e-19 97.1 111 51.4
Sc12g0002390 Simmondsia chinensis HOM05D001891 ORTHO05D004048 1.7e-18 96.3 119 55.5
AT3G21865 Arabidopsis thaliana HOM05D001891 ORTHO05D004048 2.8e-18 95.5 123 52.0
CARHR097820 Cardamine hirsuta HOM05D001891 ORTHO05D004048 2.8e-18 95.5 120 51.7
Lsat_1_v5_gn_3_43721 Lactuca sativa HOM05D001891 ORTHO05D004048 2.8e-18 95.5 119 50.4
EL10Ac9g20654 Beta vulgaris HOM05D001891 ORTHO05D004048 3.7e-18 95.1 119 55.5
Ah.01g014600 Amaranthus hybridus HOM05D001891 ORTHO05D004048 4.8e-18 94.7 119 55.5
A01p33120 Brassica napus HOM05D001891 ORTHO05D004048 4.8e-18 94.7 109 52.3
BraA01t03435Z Brassica rapa HOM05D001891 ORTHO05D004048 4.8e-18 94.7 109 52.3
Sp3g19830 Schrenkiella parvula HOM05D001891 ORTHO05D004048 8.3e-18 94.0 120 50.8
BcaC05g28120 Brassica carinata HOM05D001891 ORTHO05D004048 1.1e-17 93.6 117 51.3
C05p41520 Brassica napus HOM05D001891 ORTHO05D004048 1.1e-17 93.6 117 51.3
BolC5t32890H Brassica oleracea HOM05D001891 ORTHO05D004048 1.1e-17 93.6 117 51.3
AUR62037141 Chenopodium quinoa HOM05D001891 ORTHO05D004048 1.1e-17 93.6 119 53.8
SalBow7G2009 Salvia bowleyana HOM05D001891 ORTHO05D004048 1.1e-17 93.6 119 52.1
BcaB06g26288 Brassica carinata HOM05D001891 ORTHO05D004048 2.4e-17 92.4 116 51.7
A05p26910 Brassica napus HOM05D001891 ORTHO05D004048 2.4e-17 92.4 120 50.8
BraA03t13403Z Brassica rapa HOM05D001891 ORTHO05D004048 2.4e-17 92.4 123 51.2
BraA05t21571Z Brassica rapa HOM05D001891 ORTHO05D004048 2.4e-17 92.4 120 50.8
Migut.M00394 Erythranthe guttata HOM05D001891 ORTHO05D004048 3.1e-17 92.0 121 49.6
Thhalv10021287m.g Eutrema salsugineum HOM05D001891 ORTHO05D004048 3.1e-17 92.0 120 49.2
A03p42500 Brassica napus HOM05D001891 ORTHO05D004048 4.1e-17 91.7 123 51.2
BolC3t17487H Brassica oleracea HOM05D001891 ORTHO05D004048 5.3e-17 91.3 121 48.8
AUR62025059 Chenopodium quinoa HOM05D001891 ORTHO05D004048 7.0e-17 90.9 119 52.1
BcaC01g03476 Brassica carinata HOM05D001891 ORTHO05D004048 1.2e-16 90.1 120 48.3
C03p52060 Brassica napus HOM05D001891 ORTHO05D004048 1.2e-16 90.1 120 48.3
AL3G36020 Arabidopsis lyrata HOM05D001891 ORTHO05D004048 1.6e-16 89.7 122 50.0
BcaB04g20555 Brassica carinata HOM05D001891 ORTHO05D004048 1.6e-16 89.7 124 49.2
Migut.H01220 Erythranthe guttata HOM05D001891 ORTHO05D004048 1.6e-16 89.7 115 49.6
arahy.Tifrunner.gnm1.ann1.CI1LQF Arachis hypogaea HOM05D001891 ORTHO05D004048 2.7e-16 89.0 109 55.0
Oeu052537.1 Olea europaea HOM05D001891 ORTHO05D004048 2.7e-16 89.0 119 51.3
BcaC09g49125 Brassica carinata HOM05D001891 ORTHO05D004048 3.8e-15 85.1 119 47.9
ClCG02G001770 Citrullus lanatus HOM05D001891 ORTHO05D004048 5.0e-15 84.7 121 45.5
BcaC09g49127 Brassica carinata HOM05D001891 ORTHO05D004048 6.5e-15 84.3 108 47.2
CDE04G1330 Ceratophyllum demersum HOM05D001891 ORTHO05D004048 8.5e-15 84.0 119 48.7
unitig_21.g20003 Utricularia gibba HOM05D001891 ORTHO05D004048 8.5e-15 84.0 117 46.2
BcaB04g19187 Brassica carinata HOM05D001891 ORTHO05D004048 1.1e-14 83.6 121 47.1
Carub.0003s2193 Capsella rubella HOM05D001891 ORTHO05D004048 1.1e-14 83.6 121 47.1
HanXRQChr10g0297471 Helianthus annuus HOM05D001891 ORTHO05D004048 1.1e-14 83.6 114 46.5
C01p42350 Brassica napus HOM05D001891 ORTHO05D004048 1.5e-14 83.2 118 47.5
CDE07G1567 Ceratophyllum demersum HOM05D001891 ORTHO05D004048 1.5e-14 83.2 114 43.0
BcaC09g49122 Brassica carinata HOM05D001891 ORTHO05D004048 3.2e-14 82.0 119 46.2
BolC1t04190H Brassica oleracea HOM05D001891 ORTHO05D004048 3.2e-14 82.0 119 46.2
Aa31LG9G2160 Aethionema arabicum HOM05D001891 ORTHO05D004048 8.0e-13 77.4 100 52.0
MBI06_g15670_MAGBIO Magnolia biondii HOM05D001891 ORTHO05D004048 1.0e-12 77.0 113 46.9
Zm00001eb431430 Zea mays HOM05D001891 ORTHO05D004048 1.0e-12 77.0 117 44.4
Sed0020603 Sechium edule HOM05D001891 ORTHO05D004048 3.0e-12 75.5 119 42.9
Os04g0629000 Oryza sativa ssp. japonica HOM05D001891 ORTHO05D004048 5.2e-12 74.7 113 46.9
Dinv02385 Davidia involucrata HOM05D001891 ORTHO05D004048 2.0e-11 72.8 113 42.5
unitig_578.g16774 Utricularia gibba HOM05D001891 ORTHO05D004048 2.6e-11 72.4 119 42.9
HPP92_009055 Vanilla planifolia HOM05D001891 ORTHO05D004048 9.8e-11 70.5 113 40.7
AagrBONN_evm.TU.Sc2ySwM_362.2694 Anthoceros agrestis HOM05D001891 ORTHO05D004048 1.7e-10 69.7 121 42.1
HPP92_004139 Vanilla planifolia HOM05D001891 ORTHO05D004048 2.8e-10 68.9 118 45.8
Zm00001eb069570 Zea mays HOM05D001891 ORTHO05D004048 2.8e-10 68.9 117 41.9
Lj3A852T54 Lonicera japonica HOM05D001891 ORTHO05D004048 3.7e-10 68.6 112 42.9
Aqoxy4G02095 Aquilegia oxysepala HOM05D001891 ORTHO05D004048 1.4e-09 66.6 119 39.5
Actinidia00164 Actinidia chinensis HOM05D001891 ORTHO05D004048 1.8e-09 66.2 114 43.9
ATR0618G228 Amborella trichopoda HOM05D001891 ORTHO05D004048 1.8e-09 66.2 114 43.9
MBI03_g22259_MAGBIO Magnolia biondii HOM05D001891 ORTHO05D004048 2.4e-09 65.9 109 42.2
Ah.01g003690 Amaranthus hybridus HOM05D001891 ORTHO05D004048 4.1e-09 65.1 108 42.6
MELO3C019235.2 Cucumis melo HOM05D001891 ORTHO05D004048 5.4e-09 64.7 58 65.5
SEGI_12996 Sequoiadendron giganteum HOM05D001891 ORTHO05D004048 5.4e-09 64.7 116 38.8
TAR629G0018 Trochodendron aralioides HOM05D001891 ORTHO05D004048 7.0e-09 64.3 114 41.2
BcaC09g49129 Brassica carinata HOM05D001891 ORTHO05D004048 9.1e-09 63.9 50 68.0
Hund01141 Selenicereus undatus HOM05D001891 ORTHO05D004048 2.7e-08 62.4 70 58.6
Aqoxy4G02099 Aquilegia oxysepala HOM05D001891 ORTHO05D004048 1.0e-07 60.5 59 57.6
SMO356G0403 Selaginella moellendorffii HOM05D001891 ORTHO05D004048 1.0e-07 60.5 115 36.5
QL03p043045 Quercus lobata HOM05D001891 ORTHO05D004048 2.3e-07 59.3 104 37.5
DCAR_002621 Daucus carota HOM05D001891 ORTHO05D004048 3.8e-07 58.5 104 37.5
Mapoly0037s0074 Marchantia polymorpha HOM05D001891 ORTHO05D004048 1.5e-06 56.6 115 35.7
Zm00001eb066610 Zea mays HOM05D001891 ORTHO05D004048 9.5e-06 53.9 104 40.4


User provided reference genes

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