Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0039012 Camellia sinensis var. sinensis HOM05D006898 ORTHO05D008506 3.0e-194 681.8 373 100.0
Rhsim07G0174000 Rhododendron simsii HOM05D006898 ORTHO05D008506 2.1e-115 419.9 468 54.3
Actinidia03566 Actinidia chinensis HOM05D006898 ORTHO05D008506 2.3e-114 416.4 456 56.4
Hma1.2p1_0214F.1_g090725 Hydrangea macrophylla HOM05D006898 ORTHO05D008506 3.4e-113 412.5 380 59.5
vmacro05087 Vaccinium macrocarpon HOM05D006898 ORTHO05D008506 4.0e-106 389.0 528 47.9
Nn5g26940 Nelumbo nucifera HOM05D006898 ORTHO05D008506 2.6e-105 386.3 296 68.2
DCAR_004547 Daucus carota HOM05D006898 ORTHO05D008506 3.2e-103 379.4 375 56.3
Lj8A413G21 Lonicera japonica HOM05D006898 ORTHO05D008506 1.3e-101 374.0 425 51.3
Prupe.1G463000 Prunus persica HOM05D006898 ORTHO05D008506 1.8e-98 363.6 377 55.7
QL12p024620 Quercus lobata HOM05D006898 ORTHO05D008506 5.2e-98 362.1 377 54.1
TAR383G0625 Trochodendron aralioides HOM05D006898 ORTHO05D008506 2.6e-97 359.8 268 69.0
RcHm_v2.0_Chr6g0312281 Rosa chinensis HOM05D006898 ORTHO05D008506 4.9e-96 355.5 376 54.8
Dinv09447 Davidia involucrata HOM05D006898 ORTHO05D008506 6.4e-96 355.1 350 57.1
Nitab4.5_0002138g0020 Nicotiana tabacum HOM05D006898 ORTHO05D008506 6.4e-96 355.1 382 54.2
CiPaw.07G215200 Carya illinoinensis HOM05D006898 ORTHO05D008506 1.4e-95 354.0 379 52.8
Potri.005G179700 Populus trichocarpa HOM05D006898 ORTHO05D008506 1.4e-95 354.0 373 53.1
FvH4_2g30630 Fragaria vesca HOM05D006898 ORTHO05D008506 1.9e-95 353.6 368 54.9
FAN15G2927 Fragaria x ananassa HOM05D006898 ORTHO05D008506 4.1e-95 352.4 371 54.4
Sed0005742 Sechium edule HOM05D006898 ORTHO05D008506 5.4e-95 352.1 367 53.4
FAN24G1534 Fragaria x ananassa HOM05D006898 ORTHO05D008506 7.1e-95 351.7 371 54.2
PGSC0003DMG400003978 Solanum tuberosum HOM05D006898 ORTHO05D008506 7.1e-95 351.7 381 54.3
ClCG05G017390 Citrullus lanatus HOM05D006898 ORTHO05D008506 1.2e-94 350.9 370 54.1
SGA_v2.0_scaffold27G11702 Striga asiatica HOM05D006898 ORTHO05D008506 1.2e-94 350.9 381 52.0
Haze_21680 Corylus avellana HOM05D006898 ORTHO05D008506 1.6e-94 350.5 403 52.4
Medtr1g010070 Medicago truncatula HOM05D006898 ORTHO05D008506 1.6e-94 350.5 438 49.3
Sopen11g001550 Solanum pennellii HOM05D006898 ORTHO05D008506 2.7e-94 349.7 381 54.1
Ca_12885_v3 Cicer arietinum L. HOM05D006898 ORTHO05D008506 3.5e-94 349.4 379 53.3
MELO3C003647.2 Cucumis melo HOM05D006898 ORTHO05D008506 4.6e-94 349.0 371 54.4
Psat6g031720 Pisum sativum HOM05D006898 ORTHO05D008506 6.0e-94 348.6 437 49.4
CAN.G476.10 Capsicum annuum HOM05D006898 ORTHO05D008506 1.0e-93 347.8 450 50.7
Solyc11g005580.1 Solanum lycopersicum HOM05D006898 ORTHO05D008506 1.3e-93 347.4 381 53.5
TPR.G12020 Trifolium pratense HOM05D006898 ORTHO05D008506 1.3e-93 347.4 437 53.1
AUR62028029 Chenopodium quinoa HOM05D006898 ORTHO05D008506 2.3e-93 346.7 386 51.6
CsaV3_3G046900 Cucumis sativus L. HOM05D006898 ORTHO05D008506 3.0e-93 346.3 370 53.8
Migut.A00518 Erythranthe guttata HOM05D006898 ORTHO05D008506 3.9e-93 345.9 444 47.5
Nitab4.5_0001582g0070 Nicotiana tabacum HOM05D006898 ORTHO05D008506 6.6e-93 345.1 452 48.5
ECA246G1941 Erigeron canadensis HOM05D006898 ORTHO05D008506 1.1e-92 344.4 377 50.7
EL10Ac2g03651 Beta vulgaris HOM05D006898 ORTHO05D008506 1.9e-92 343.6 383 52.2
Glyma.11G174910 Glycine max HOM05D006898 ORTHO05D008506 2.5e-92 343.2 440 49.5
Glyma.14G132300 Glycine max HOM05D006898 ORTHO05D008506 3.3e-92 342.8 377 53.6
Peaxi162Scf00025g02821 Petunia axillaris HOM05D006898 ORTHO05D008506 3.3e-92 342.8 382 52.6
SalBow4G3225 Salvia bowleyana HOM05D006898 ORTHO05D008506 1.2e-91 340.9 444 48.9
Hund19373 Selenicereus undatus HOM05D006898 ORTHO05D008506 6.2e-91 338.6 379 52.2
Lalb_Chr22g0361311 Lupinus albus HOM05D006898 ORTHO05D008506 1.4e-90 337.4 372 51.9
AUR62020696 Chenopodium quinoa HOM05D006898 ORTHO05D008506 3.1e-90 336.3 357 54.3
Ah.10g033620 Amaranthus hybridus HOM05D006898 ORTHO05D008506 5.2e-90 335.5 379 51.5
AL6G21470 Arabidopsis lyrata HOM05D006898 ORTHO05D008506 8.9e-90 334.7 429 49.9
Atru.chr7.2715 Acer truncatum HOM05D006898 ORTHO05D008506 1.2e-89 334.3 270 67.4
Duzib168G1571 Durio zibethinus HOM05D006898 ORTHO05D008506 2.6e-89 333.2 385 51.2
C09p65920 Brassica napus HOM05D006898 ORTHO05D008506 4.4e-89 332.4 380 51.3
arahy.Tifrunner.gnm1.ann1.TJ47BC Arachis hypogaea HOM05D006898 ORTHO05D008506 9.9e-89 331.3 357 52.7
Thhalv10013596m.g Eutrema salsugineum HOM05D006898 ORTHO05D008506 1.7e-88 330.5 452 47.8
arahy.Tifrunner.gnm1.ann1.UC5PKR Arachis hypogaea HOM05D006898 ORTHO05D008506 2.2e-88 330.1 357 52.9
A10p26780 Brassica napus HOM05D006898 ORTHO05D008506 2.2e-88 330.1 380 50.8
COL.COLO4_18635 Corchorus olitorius HOM05D006898 ORTHO05D008506 2.2e-88 330.1 388 50.0
Carub.0006s0940 Capsella rubella HOM05D006898 ORTHO05D008506 2.9e-88 329.7 431 49.0
unitig_748.g8163 Utricularia gibba HOM05D006898 ORTHO05D008506 3.8e-88 329.3 378 48.9
AT5G10910 Arabidopsis thaliana HOM05D006898 ORTHO05D008506 4.9e-88 328.9 377 49.9
Thecc.09G001800 Theobroma cacao HOM05D006898 ORTHO05D008506 6.4e-88 328.6 352 52.6
Sabra05G0135900 Salix brachista HOM05D006898 ORTHO05D008506 8.4e-88 328.2 366 50.8
Gohir.D07G001300 Gossypium hirsutum HOM05D006898 ORTHO05D008506 1.1e-87 327.8 467 46.0
PGR142G0710 Punica granatum HOM05D006898 ORTHO05D008506 1.1e-87 327.8 373 49.6
Sp6g32580 Schrenkiella parvula HOM05D006898 ORTHO05D008506 1.4e-87 327.4 370 50.5
Gorai.001G001000 Gossypium raimondii HOM05D006898 ORTHO05D008506 1.9e-87 327.0 467 45.8
BraA10t44732Z Brassica rapa HOM05D004194 ORTHO05D005641 2.4e-87 326.6 372 50.8
THA.LOC104824957 Tarenaya hassleriana HOM05D006898 ORTHO05D008506 2.4e-87 326.6 364 50.5
CARHR202380 Cardamine hirsuta HOM05D006898 ORTHO05D008506 3.2e-87 326.2 379 49.3
Sc06g0001380 Simmondsia chinensis HOM05D006898 ORTHO05D008506 9.2e-87 324.7 382 50.0
CANSAT21G1714 Cannabis sativa HOM05D006898 ORTHO05D008506 3.5e-86 322.8 236 70.8
Eucgr.C02146 Eucalyptus grandis HOM05D006898 ORTHO05D008506 3.5e-86 322.8 236 69.5
Manes.02G165600 Manihot esculenta HOM05D006898 ORTHO05D008506 3.5e-86 322.8 346 54.3
Ciclev10008259m.g Citrus clementina HOM05D006898 ORTHO05D008506 6.0e-86 322.0 268 63.8
Os02g0137600 Oryza sativa ssp. japonica HOM05D006898 ORTHO05D008506 6.0e-86 322.0 389 48.6
BolC9t59415H Brassica oleracea HOM05D006898 ORTHO05D008506 7.8e-86 321.6 348 52.0
BcaC04g19278 Brassica carinata HOM05D006898 ORTHO05D008506 1.0e-85 321.2 348 51.7
Gohir.A07G000900 Gossypium hirsutum HOM05D006898 ORTHO05D008506 1.3e-85 320.9 350 52.3
Oeu007490.1 Olea europaea HOM05D006898 ORTHO05D008506 5.1e-85 318.9 347 52.7
MD15G1110800 Malus domestica HOM05D006898 ORTHO05D008506 1.5e-84 317.4 350 54.6
HanXRQChr17g0538631 Helianthus annuus HOM05D006898 ORTHO05D008506 2.5e-84 316.6 276 61.2
VMungo0647G2166 Vigna mungo HOM05D006898 ORTHO05D008506 5.6e-84 315.5 255 65.5
Lj5g0012927 Lotus japonicus HOM05D006898 ORTHO05D008506 9.6e-84 314.7 236 69.1
Phvul.001G057500 Phaseolus vulgaris HOM05D006898 ORTHO05D008506 2.1e-83 313.5 255 65.5
PSO017G3342 Papaver somniferum HOM05D006898 ORTHO05D008506 2.8e-83 313.2 384 49.7
MD08G1133300 Malus domestica HOM05D006898 ORTHO05D008506 1.4e-82 310.8 241 67.6
TWI31G0903 Tripterygium wilfordii HOM05D006898 ORTHO05D008506 1.4e-82 310.8 237 69.6
Lj8C418G2 Lonicera japonica HOM05D006898 ORTHO05D008506 1.8e-82 310.5 238 68.5
ATR0626G384 Amborella trichopoda HOM05D006898 ORTHO05D008506 5.2e-82 308.9 372 47.0
CDE06G0577 Ceratophyllum demersum HOM05D006898 ORTHO05D008506 1.2e-81 307.8 236 66.9
Aa31LG3G16210 Aethionema arabicum HOM05D004194 ORTHO05D005641 2.0e-81 307.0 338 50.0
GSVIVG01035599001 Vitis vinifera HOM05D006898 ORTHO05D008506 2.6e-81 306.6 294 59.5
HPP92_018581 Vanilla planifolia HOM05D006898 ORTHO05D008506 5.8e-81 305.4 369 47.4
FAN20G2020 Fragaria x ananassa HOM05D006898 ORTHO05D008506 1.6e-78 297.4 345 51.0
Aqoxy7G02535 Aquilegia oxysepala HOM05D006898 ORTHO05D008506 2.1e-78 297.0 235 63.8
Lsat_1_v5_gn_3_25521 Lactuca sativa HOM05D006898 ORTHO05D008506 2.1e-78 297.0 341 50.4
PSO170G2692 Papaver somniferum HOM05D006898 ORTHO05D008506 1.9e-76 290.4 234 65.4
FAN20G0784 Fragaria x ananassa HOM05D006898 ORTHO05D008506 5.6e-76 288.9 221 68.8
HPP92_018578 Vanilla planifolia HOM05D006898 ORTHO05D008506 5.8e-73 278.9 342 47.1
Cc03_g11200 Coffea canephora HOM05D006898 ORTHO05D008506 3.8e-72 276.2 208 67.3
Cpa.g.sc117.17 Carica papaya HOM05D006898 ORTHO05D008506 3.1e-66 256.5 216 63.9
Glyma.17G200800 Glycine max HOM05D006898 ORTHO05D008506 8.4e-64 248.4 190 69.5
Mapoly0071s0027 Marchantia polymorpha HOM05D006898 ORTHO05D008506 1.3e-51 208.0 250 48.0
Pp3c15_22340 Physcomitrium patens HOM05D006898 ORTHO05D008506 2.8e-51 206.8 358 38.8
Cre13.g568150 Chlamydomonas reinhardtii HOM05D006898 ORTHO05D008506 7.7e-41 172.2 346 32.9
MCO14G201 Micromonas commoda HOM05D006898 ORTHO05D008506 1.1e-39 168.3 349 32.4
SMO119G0345 Selaginella moellendorffii HOM05D006898 ORTHO05D008506 2.4e-34 150.6 239 41.4
PRCOL_00004989 Prasinoderma coloniale HOM05D006898 ORTHO05D008506 5.5e-31 139.4 346 30.6
QL07p037905 Quercus lobata HOM05D006898 ORTHO05D008506 1.6e-30 137.9 102 69.6
AagrBONN_evm.TU.Sc2ySwM_362.1618 Anthoceros agrestis HOM05D006898 ORTHO05D008506 3.2e-23 113.6 143 46.2
CBR_g40185 Chara braunii HOM05D000019 ORTHO05D001702 1.8e-21 107.8 122 43.4
Ca_29432_v3 Cicer arietinum L. HOM05D006898 ORTHO05D008506 5.3e-18 96.3 150 38.0
AagrBONN_evm.TU.Sc2ySwM_228.2079 Anthoceros agrestis HOM05D006898 ORTHO05D008506 1.6e-17 94.7 112 45.5
Cc03_g11180 Coffea canephora HOM05D006898 ORTHO05D008506 1.5e-15 88.2 170 35.3
VMungo1309G1975 Vigna mungo HOM05D006898 ORTHO05D008506 2.5e-15 87.4 123 43.9
MCO07G214 Micromonas commoda HOM05D006898 ORTHO05D008506 8.6e-08 62.4 244 26.2
Zm00001eb231840 Zea mays HOM05D006898 ORTHO05D008506 3.3e-07 60.5 68 54.4
HanXRQChr08g0214621 Helianthus annuus HOM05D006898 ORTHO05D008506 2.1e-06 57.8 39 64.1


User provided reference genes

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