Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0039002 Camellia sinensis var. sinensis HOM05D004871 ORTHO05D005755 1.5e-43 179.1 90 100.0
CSS0034270 Camellia sinensis var. sinensis HOM05D004871 ORTHO05D005755 2.5e-38 161.8 88 93.2
Dinv33442 Davidia involucrata HOM05D005666 ORTHO05D007183 1.7e-34 149.1 87 83.9
CSS0033026 Camellia sinensis var. sinensis HOM05D004871 ORTHO05D005755 8.3e-34 146.7 72 100.0
Rhsim08G0049200 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.9e-33 145.6 87 83.9
QL02p074723 Quercus lobata HOM05D004871 ORTHO05D005755 5.4e-33 144.1 87 82.8
CSS0032397 Camellia sinensis var. sinensis HOM05D004871 ORTHO05D005755 2.1e-32 142.1 86 82.6
TAR622G0125 Trochodendron aralioides HOM05D004871 ORTHO05D005755 6.0e-32 140.6 88 78.4
CiPaw.03G043700 Carya illinoinensis HOM05D004871 ORTHO05D005755 7.8e-32 140.2 87 80.5
Dinv35106 Davidia involucrata HOM05D004871 ORTHO05D005755 1.0e-31 139.8 86 80.2
Aqoxy5G03783 Aquilegia oxysepala HOM05D004871 ORTHO05D005755 1.3e-31 139.4 88 79.5
Cpa.g.sc130.82 Carica papaya HOM05D004871 ORTHO05D005755 1.3e-31 139.4 87 78.2
Prupe.3G291600 Prunus persica HOM05D004871 ORTHO05D005755 1.3e-31 139.4 87 77.0
MD09G1027100 Malus domestica HOM05D004871 ORTHO05D005755 2.3e-31 138.7 87 75.9
CANSAT64G1143 Cannabis sativa HOM05D004871 ORTHO05D005755 3.0e-31 138.3 84 79.8
CiPaw.04G028400 Carya illinoinensis HOM05D004871 ORTHO05D005755 3.0e-31 138.3 87 79.3
Rhsim08G0050600 Rhododendron simsii HOM05D004871 ORTHO05D005755 3.0e-31 138.3 87 78.2
Hma1.2p1_2120F.1_g314420 Hydrangea macrophylla HOM05D004871 ORTHO05D005755 5.1e-31 137.5 87 78.2
Atru.chr6.2393 Acer truncatum HOM05D004871 ORTHO05D005755 8.6e-31 136.7 85 80.0
FAN02G2556 Fragaria x ananassa HOM05D004871 ORTHO05D005755 1.9e-30 135.6 87 74.7
MD17G1027100 Malus domestica HOM05D004871 ORTHO05D005755 1.9e-30 135.6 87 75.9
Ciclev10015079m.g Citrus clementina HOM05D004871 ORTHO05D005755 3.3e-30 134.8 87 73.6
FAN09G0732 Fragaria x ananassa HOM05D000795 ORTHO05D005755 3.3e-30 134.8 87 74.7
FAN14G1702 Fragaria x ananassa HOM05D004871 ORTHO05D005755 3.3e-30 134.8 87 74.7
FAN05G3698 Fragaria x ananassa HOM05D004871 ORTHO05D005755 4.3e-30 134.4 86 74.4
Lj1g0007322 Lotus japonicus HOM05D004871 ORTHO05D005755 5.6e-30 134.0 86 79.1
Thecc.04G017200 Theobroma cacao HOM05D004871 ORTHO05D005755 5.6e-30 134.0 87 75.9
Ca_23007_v3 Cicer arietinum L. HOM05D004871 ORTHO05D005755 7.3e-30 133.7 86 76.7
Nn3g16731 Nelumbo nucifera HOM05D004871 ORTHO05D005755 7.3e-30 133.7 88 75.0
Nn3g16736 Nelumbo nucifera HOM05D004871 ORTHO05D005755 7.3e-30 133.7 88 75.0
RcHm_v2.0_Chr2g0172801 Rosa chinensis HOM05D004871 ORTHO05D005755 7.3e-30 133.7 87 74.7
Cc07_g01680 Coffea canephora HOM05D004871 ORTHO05D005755 1.2e-29 132.9 88 76.1
FvH4_6g51200 Fragaria vesca HOM05D004871 ORTHO05D005755 1.6e-29 132.5 86 74.4
DCAR_021722 Daucus carota HOM05D004871 ORTHO05D005755 2.1e-29 132.1 86 74.4
GSVIVG01032408001 Vitis vinifera HOM05D004871 ORTHO05D005755 2.1e-29 132.1 87 74.7
Peaxi162Scf00129g00168 Petunia axillaris HOM05D004871 ORTHO05D005755 4.7e-29 131.0 88 73.9
TWI12G0316 Tripterygium wilfordii HOM05D004871 ORTHO05D005755 4.7e-29 131.0 87 73.6
Atru.chr6.2392 Acer truncatum HOM05D004871 ORTHO05D005755 6.2e-29 130.6 85 76.5
Cfa007369 Carpinus fangiana HOM05D004871 ORTHO05D005755 8.1e-29 130.2 87 74.7
Haze_14739 Corylus avellana HOM05D004871 ORTHO05D005755 8.1e-29 130.2 87 74.7
Gohir.A05G355800 Gossypium hirsutum HOM05D004871 ORTHO05D005755 1.1e-28 129.8 87 74.7
Gohir.D04G057500 Gossypium hirsutum HOM05D004871 ORTHO05D005755 1.1e-28 129.8 87 74.7
Gorai.012G064200 Gossypium raimondii HOM05D004871 ORTHO05D005755 1.1e-28 129.8 87 74.7
Nitab4.5_0002468g0010 Nicotiana tabacum HOM05D004871 ORTHO05D005755 1.1e-28 129.8 87 73.6
Potri.017G069800 Populus trichocarpa HOM05D004871 ORTHO05D005755 1.1e-28 129.8 84 73.8
PGSC0003DMG400012633 Solanum tuberosum HOM05D004871 ORTHO05D005755 1.1e-28 129.8 87 74.7
Medtr7g033720 Medicago truncatula HOM05D004871 ORTHO05D005755 1.8e-28 129.0 86 73.3
CAN.G473.11 Capsicum annuum HOM05D004871 ORTHO05D005755 2.3e-28 128.6 87 73.6
Sabra17G0062100 Salix brachista HOM05D004871 ORTHO05D005755 2.3e-28 128.6 84 72.6
Sopen02g031150 Solanum pennellii HOM05D004871 ORTHO05D005755 2.3e-28 128.6 87 73.6
Eucgr.J02242 Eucalyptus grandis HOM05D004871 ORTHO05D005755 3.1e-28 128.3 82 76.8
PSO063G1038 Papaver somniferum HOM05D004871 ORTHO05D005755 5.2e-28 127.5 88 75.0
Peaxi162Scf00129g01652 Petunia axillaris HOM05D004871 ORTHO05D005755 5.2e-28 127.5 88 72.7
Gohir.D07G229900 Gossypium hirsutum HOM05D004871 ORTHO05D005755 8.9e-28 126.7 88 72.7
Gorai.001G265000 Gossypium raimondii HOM05D004871 ORTHO05D005755 8.9e-28 126.7 88 72.7
Psat3g166880 Pisum sativum HOM05D004871 ORTHO05D005755 8.9e-28 126.7 86 73.3
MSTRG.24039 Avicennia marina HOM05D004871 ORTHO05D005755 1.5e-27 125.9 84 75.0
Sc16g0004350 Simmondsia chinensis HOM05D004871 ORTHO05D005755 1.5e-27 125.9 87 71.3
Lju41C42T3 Lonicera japonica HOM05D004871 ORTHO05D005755 2.6e-27 125.2 87 69.0
PSO832G2649 Papaver somniferum HOM05D004871 ORTHO05D005755 2.6e-27 125.2 88 73.9
PGR083G0754 Punica granatum HOM05D004871 ORTHO05D005755 2.6e-27 125.2 84 73.8
Rhsim08G0048900 Rhododendron simsii HOM05D004871 ORTHO05D005755 2.6e-27 125.2 87 72.4
Eucgr.H01852 Eucalyptus grandis HOM05D004871 ORTHO05D005755 3.4e-27 124.8 82 75.6
Eucgr.L00043 Eucalyptus grandis HOM05D004871 ORTHO05D005755 3.4e-27 124.8 82 75.6
Glyma.19G068600 Glycine max HOM05D004871 ORTHO05D005755 3.4e-27 124.8 86 72.1
Lalb_Chr14g0362771 Lupinus albus HOM05D004871 ORTHO05D005755 3.4e-27 124.8 86 73.3
Nitab4.5_0003318g0120 Nicotiana tabacum HOM05D004871 ORTHO05D005755 3.4e-27 124.8 87 71.3
Oeu054623.1 Olea europaea HOM05D004871 ORTHO05D005755 3.4e-27 124.8 85 75.3
Manes.15G150700 Manihot esculenta HOM05D004871 ORTHO05D005755 4.4e-27 124.4 88 70.5
CsaV3_3G042800 Cucumis sativus L. HOM05D004871 ORTHO05D005755 5.8e-27 124.0 88 69.3
Duzib147G1217 Durio zibethinus HOM05D004871 ORTHO05D005755 5.8e-27 124.0 87 71.3
MELO3C026581.2 Cucumis melo HOM05D004871 ORTHO05D005755 1.3e-26 122.9 88 67.0
Oeu018139.1 Olea europaea HOM05D004871 ORTHO05D005755 1.3e-26 122.9 84 73.8
SalBow1G4779 Salvia bowleyana HOM05D004871 ORTHO05D005755 1.3e-26 122.9 84 71.4
FAN09G0037 Fragaria x ananassa HOM05D004871 ORTHO05D005755 2.2e-26 122.1 82 73.2
ClCG10G013890 Citrullus lanatus HOM05D004871 ORTHO05D005755 2.9e-26 121.7 87 66.7
Migut.H00077 Erythranthe guttata HOM05D004871 ORTHO05D005755 2.9e-26 121.7 85 69.4
VMungo1383G0924 Vigna mungo HOM05D004871 ORTHO05D005755 4.9e-26 120.9 86 72.1
Rhsim08G0050100 Rhododendron simsii HOM05D004871 ORTHO05D005755 8.3e-26 120.2 87 70.1
COL.COLO4_29115 Corchorus olitorius HOM05D004871 ORTHO05D005755 1.1e-25 119.8 88 70.5
Lalb_Chr24g0402861 Lupinus albus HOM05D004871 ORTHO05D005755 1.1e-25 119.8 86 70.9
CDE08G0710 Ceratophyllum demersum HOM05D004871 ORTHO05D005755 1.4e-25 119.4 88 65.9
Glyma.16G071200 Glycine max HOM05D004871 ORTHO05D005755 2.4e-25 118.6 86 68.6
SGA_v2.0_scaffold18G08277 Striga asiatica HOM05D004871 ORTHO05D005755 2.4e-25 118.6 84 66.7
TAR371G1027 Trochodendron aralioides HOM05D004871 ORTHO05D005755 3.2e-25 118.2 88 65.9
Phvul.008G154600 Phaseolus vulgaris HOM05D004871 ORTHO05D005755 7.1e-25 117.1 86 69.8
TPR.G1076 Trifolium pratense HOM05D004871 ORTHO05D005755 7.1e-25 117.1 80 71.2
FAN27G1866 Fragaria x ananassa HOM05D004871 ORTHO05D005755 1.2e-24 116.3 74 74.3
Rhsim08G0050000 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.6e-24 115.9 88 67.0
TAR371G0422 Trochodendron aralioides HOM05D004871 ORTHO05D005755 1.6e-24 115.9 88 69.3
vmacro18284 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 2.1e-24 115.5 87 65.5
vmacro23391 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 2.1e-24 115.5 87 65.5
TAR371G0152 Trochodendron aralioides HOM05D004871 ORTHO05D005755 2.7e-24 115.2 88 69.3
THA.LOC104825322 Tarenaya hassleriana HOM05D004871 ORTHO05D005755 4.6e-24 114.4 86 64.0
HPP92_009906 Vanilla planifolia HOM05D004871 ORTHO05D005755 2.3e-23 112.1 85 65.9
Sed0007166 Sechium edule HOM05D004871 ORTHO05D005755 6.6e-23 110.5 88 60.2
Rhsim08G0050200 Rhododendron simsii HOM05D004871 ORTHO05D005755 2.5e-22 108.6 87 62.1
TAR371G0343 Trochodendron aralioides HOM05D004871 ORTHO05D005755 3.3e-22 108.2 88 64.8
BraA04t17009Z Brassica rapa HOM05D004871 ORTHO05D005755 7.3e-22 107.1 87 59.8
SalBow2G2412 Salvia bowleyana HOM05D004871 ORTHO05D005755 9.5e-22 106.7 84 59.5
A04p13500 Brassica napus HOM05D004871 ORTHO05D005755 1.2e-21 106.3 87 58.6
ATR0686G244 Amborella trichopoda HOM05D004871 ORTHO05D005755 2.1e-21 105.5 88 60.2
CARHR261520 Cardamine hirsuta HOM05D004871 ORTHO05D005755 2.1e-21 105.5 87 59.8
vmacro18283 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 2.1e-21 105.5 87 62.1
vmacro23390 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 2.1e-21 105.5 87 62.1
Rhsim08G0050300 Rhododendron simsii HOM05D004871 ORTHO05D005755 3.6e-21 104.8 87 62.1
TAR633G0371 Trochodendron aralioides HOM05D004871 ORTHO05D005755 3.6e-21 104.8 88 65.9
Rhsim08G0049600 Rhododendron simsii HOM05D004871 ORTHO05D005755 4.7e-21 104.4 88 63.6
unitig_899.g14805 Utricularia gibba HOM05D004871 ORTHO05D005755 4.7e-21 104.4 79 67.1
vmacro18285 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 4.7e-21 104.4 87 63.2
vmacro23392 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 4.7e-21 104.4 87 63.2
HanXRQChr15g0475301 Helianthus annuus HOM05D004871 ORTHO05D005755 8.1e-21 103.6 84 60.7
Sp7g01440 Schrenkiella parvula HOM05D004871 ORTHO05D005755 3.1e-20 101.7 87 57.5
C04p47280 Brassica napus HOM05D004871 ORTHO05D005755 6.8e-20 100.5 87 56.3
BolC4t26328H Brassica oleracea HOM05D004871 ORTHO05D005755 6.8e-20 100.5 87 56.3
Carub.0007s3511 Capsella rubella HOM05D004871 ORTHO05D005755 6.8e-20 100.5 87 57.5
FAN05G3297 Fragaria x ananassa HOM05D004871 ORTHO05D005755 1.2e-19 99.8 66 71.2
HanXRQChr17g0548491 Helianthus annuus HOM05D004871 ORTHO05D005755 1.2e-19 99.8 81 59.3
Thhalv10028043m.g Eutrema salsugineum HOM05D004871 ORTHO05D005755 2.0e-19 99.0 87 58.6
AT5G40470 Arabidopsis thaliana HOM05D004871 ORTHO05D005755 2.6e-19 98.6 87 55.2
AL7G49360 Arabidopsis lyrata HOM05D004871 ORTHO05D005755 5.8e-19 97.4 87 55.2
BcaB07g32983 Brassica carinata HOM05D004871 ORTHO05D005755 5.8e-19 97.4 87 54.0
Rhsim08G0049400 Rhododendron simsii HOM05D004871 ORTHO05D005755 5.8e-19 97.4 89 61.8
Lsat_1_v5_gn_0_47681 Lactuca sativa HOM05D004871 ORTHO05D005755 7.6e-19 97.1 81 59.3
Zm00001eb246170 Zea mays HOM05D004871 ORTHO05D005755 1.3e-18 96.3 83 56.6
Rhsim08G0049300 Rhododendron simsii HOM05D004871 ORTHO05D005755 2.9e-18 95.1 83 60.2
Aa31LG9G1150 Aethionema arabicum HOM05D004871 ORTHO05D005755 6.4e-18 94.0 86 52.3
Lj7C599T13 Lonicera japonica HOM05D004871 ORTHO05D005755 8.4e-18 93.6 87 55.2
FAN14G0631 Fragaria x ananassa HOM05D004871 ORTHO05D005755 7.1e-17 90.5 61 72.1
Rhsim08G0049500 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.7e-15 85.9 88 56.8
Rhsim08G0050500 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.7e-15 85.9 89 57.3
Rhsim08G0050400 Rhododendron simsii HOM05D004871 ORTHO05D005755 8.7e-15 83.6 87 55.2
TAR374G1232 Trochodendron aralioides HOM05D004871 ORTHO05D005755 1.1e-14 83.2 57 71.9
HanXRQChr07g0188231 Helianthus annuus HOM05D004871 ORTHO05D005755 5.6e-14 80.9 68 54.4
FAN05G1656 Fragaria x ananassa HOM05D004871 ORTHO05D005755 7.3e-14 80.5 51 72.5
Rhsim08G0049900 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.8e-12 75.9 87 50.6
SMO298G0062 Selaginella moellendorffii HOM05D004871 ORTHO05D005755 1.5e-11 72.8 85 43.5
Peaxi162Scf00129g01633 Petunia axillaris HOM05D004871 ORTHO05D005755 9.9e-11 70.1 49 69.4
Nn1g05920 Nelumbo nucifera HOM05D004871 ORTHO05D005755 1.9e-09 65.9 42 78.6
TAR629G3424 Trochodendron aralioides HOM05D004871 ORTHO05D005755 5.4e-09 64.3 54 61.1


User provided reference genes

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