Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038992 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000017 5.0e-50 200.7 92 100.0
vmacro03637 Vaccinium macrocarpon HOM05D000007 ORTHO05D000017 2.7e-32 141.7 113 63.7
CSS0008027 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000017 4.7e-32 141.0 114 65.8
Hma1.2p1_0127F.1_g059580 Hydrangea macrophylla HOM05D000007 ORTHO05D000017 3.7e-29 131.3 107 63.6
CSS0002420 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000017 2.4e-28 128.6 112 59.8
Hma1.2p1_0377F.1_g139643 Hydrangea macrophylla HOM05D000007 ORTHO05D000017 3.1e-28 128.3 113 59.3
Actinidia26854 Actinidia chinensis HOM05D000007 ORTHO05D000017 7.0e-28 127.1 114 56.1
CSS0024527 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000017 7.0e-28 127.1 112 58.9
Rhsim13G0144900 Rhododendron simsii HOM05D000007 ORTHO05D000017 2.0e-27 125.6 91 69.2
Dinv11914 Davidia involucrata HOM05D000007 ORTHO05D000017 3.5e-27 124.8 113 60.2
RhsimUnG0110600 Rhododendron simsii HOM05D000007 ORTHO05D000017 1.8e-23 112.5 65 76.9
CANSAT56G0084 Cannabis sativa HOM05D000007 ORTHO05D000017 7.5e-22 107.1 106 51.9
Cc00_g01300 Coffea canephora HOM05D000007 ORTHO05D000017 9.8e-22 106.7 106 52.8
Rhsim13G0145100 Rhododendron simsii HOM05D000007 ORTHO05D000017 4.8e-21 104.4 113 52.2
CANSAT56G1116 Cannabis sativa HOM05D000007 ORTHO05D000017 8.3e-21 103.6 106 50.0
Hma1.2p1_0550F.1_g177400 Hydrangea macrophylla HOM05D000007 ORTHO05D000017 1.1e-20 103.2 94 59.6
Rhsim01G0117500 Rhododendron simsii HOM05D000007 ORTHO05D000017 2.0e-19 99.0 112 49.1
Duzib168G0318 Durio zibethinus HOM05D000007 ORTHO05D000017 3.5e-19 98.2 106 50.0
Lju857C0T2 Lonicera japonica HOM05D000007 ORTHO05D000017 5.9e-19 97.4 115 47.8
Lj2P693T12 Lonicera japonica HOM05D000007 ORTHO05D000017 1.3e-18 96.3 116 47.4
vmacro03638 Vaccinium macrocarpon HOM05D000007 ORTHO05D000017 1.3e-18 96.3 107 52.3
Lj2C694T2 Lonicera japonica HOM05D000007 ORTHO05D000017 2.2e-18 95.5 116 48.3
Lj2P695T9 Lonicera japonica HOM05D000007 ORTHO05D000017 3.8e-18 94.7 116 45.7
Lj2C692T0 Lonicera japonica HOM05D000007 ORTHO05D000017 1.1e-17 93.2 116 44.8
Lj2A695T19 Lonicera japonica HOM05D000007 ORTHO05D000017 1.5e-17 92.8 116 45.7
Lj2P689T8 Lonicera japonica HOM05D000007 ORTHO05D000017 1.5e-17 92.8 110 47.3
Nn1g03289 Nelumbo nucifera HOM05D000007 ORTHO05D000017 3.2e-17 91.7 113 45.1
Lj2P928T12 Lonicera japonica HOM05D000007 ORTHO05D000017 9.5e-17 90.1 106 47.2
Lj2P943T5 Lonicera japonica HOM05D000007 ORTHO05D000017 9.5e-17 90.1 106 47.2
Lj2C696G1 Lonicera japonica HOM05D000007 ORTHO05D000017 8.0e-16 87.0 94 50.0
Lj2P687T19 Lonicera japonica HOM05D000007 ORTHO05D000017 2.3e-15 85.5 110 44.5
Lju857C0G0 Lonicera japonica HOM05D000007 ORTHO05D000017 3.0e-15 85.1 106 49.1
CSS0049080 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000017 4.0e-15 84.7 106 44.3
CSS0038812 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000017 6.8e-15 84.0 104 46.2
Manes.09G077457 Manihot esculenta HOM05D000007 ORTHO05D000017 6.8e-15 84.0 104 45.2
RhsimUnG0110700 Rhododendron simsii HOM05D000007 ORTHO05D000017 6.8e-15 84.0 118 46.6
CSS0050410 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000017 1.2e-14 83.2 104 46.2
Dinv11913 Davidia involucrata HOM05D000007 ORTHO05D000017 2.0e-14 82.4 67 64.2
Haze_06950 Corylus avellana HOM05D000007 ORTHO05D000017 3.4e-14 81.6 111 40.5
Potri.006G013000 Populus trichocarpa HOM05D000007 ORTHO05D000017 7.5e-14 80.5 105 43.8
Sabra06G0009400 Salix brachista HOM05D000007 ORTHO05D000017 9.8e-14 80.1 105 43.8
CiPaw.10G078600 Carya illinoinensis HOM05D000007 ORTHO05D000017 1.7e-13 79.3 104 40.4
Duzib192G0105 Durio zibethinus HOM05D000007 ORTHO05D000017 3.7e-13 78.2 113 38.9
Duzib160G0463 Durio zibethinus HOM05D000007 ORTHO05D000017 6.3e-13 77.4 113 38.9
Thecc.06G234200 Theobroma cacao HOM05D000007 ORTHO05D000017 6.3e-13 77.4 113 38.1
Cfa000091 Carpinus fangiana HOM05D000007 ORTHO05D000017 1.4e-12 76.3 111 37.8
AUR62012546 Chenopodium quinoa HOM05D000007 ORTHO05D000017 3.1e-12 75.1 108 39.8
Dinv30807 Davidia involucrata HOM05D000007 ORTHO05D000017 3.1e-12 75.1 106 43.4
AUR62014647 Chenopodium quinoa HOM05D000007 ORTHO05D000017 5.4e-12 74.3 116 37.9
EL10As6g23638 Beta vulgaris HOM05D000007 ORTHO05D000017 7.0e-12 73.9 108 38.9
Potri.001G035500 Populus trichocarpa HOM05D000007 ORTHO05D000017 7.0e-12 73.9 117 37.6
CiPaw.09G103100 Carya illinoinensis HOM05D000007 ORTHO05D000017 9.2e-12 73.6 118 37.3
vmacro00292 Vaccinium macrocarpon HOM05D000007 ORTHO05D000017 9.2e-12 73.6 101 41.6
vmacro00299 Vaccinium macrocarpon HOM05D000007 ORTHO05D000017 9.2e-12 73.6 101 41.6
Prupe.4G009600 Prunus persica HOM05D000007 ORTHO05D000017 1.2e-11 73.2 113 38.1
Atru.chr1.2424 Acer truncatum HOM05D000007 ORTHO05D000017 1.6e-11 72.8 128 34.4
Atru.chr1.2426 Acer truncatum HOM05D000007 ORTHO05D000017 1.6e-11 72.8 128 34.4
Sc05g0008370 Simmondsia chinensis HOM05D000007 ORTHO05D000017 1.6e-11 72.8 113 35.4
Gohir.D06G160200 Gossypium hirsutum HOM05D000007 ORTHO05D000017 2.7e-11 72.0 113 36.3
Dinv32031 Davidia involucrata HOM05D000007 ORTHO05D000017 3.5e-11 71.6 102 41.2
HanXRQChr10g0294791 Helianthus annuus HOM05D000007 ORTHO05D000017 3.5e-11 71.6 68 50.0
CiPaw.09G103200 Carya illinoinensis HOM05D000007 ORTHO05D000017 5.9e-11 70.9 104 37.5
Rhsim11G0019900 Rhododendron simsii HOM05D000007 ORTHO05D000017 7.8e-11 70.5 101 38.6
RcHm_v2.0_Chr5g0001381 Rosa chinensis HOM05D000007 ORTHO05D000017 7.8e-11 70.5 113 37.2
Gorai.010G186900 Gossypium raimondii HOM05D000007 ORTHO05D000017 1.3e-10 69.7 113 36.3
Potri.006G013200 Populus trichocarpa HOM05D000007 ORTHO05D000017 1.3e-10 69.7 67 41.8
ClCG01G010140 Citrullus lanatus HOM05D000007 ORTHO05D000017 1.7e-10 69.3 112 35.7
EL10As6g23636 Beta vulgaris HOM05D000007 ORTHO05D000017 2.3e-10 68.9 115 37.4
Actinidia16812 Actinidia chinensis HOM05D000007 ORTHO05D000017 2.9e-10 68.6 104 39.4
Thecc.06G234400 Theobroma cacao HOM05D000007 ORTHO05D000017 2.9e-10 68.6 130 35.4
Gohir.A06G153400 Gossypium hirsutum HOM05D000007 ORTHO05D000017 3.8e-10 68.2 113 34.5
Lsat_1_v5_gn_5_101640 Lactuca sativa HOM05D000007 ORTHO05D000017 3.8e-10 68.2 58 51.7
MD10G1332600 Malus domestica HOM05D000007 ORTHO05D000017 5.0e-10 67.8 106 38.7
AUR62014756 Chenopodium quinoa HOM05D000007 ORTHO05D000017 8.6e-10 67.0 111 38.7
Lalb_Chr18g0057011 Lupinus albus HOM05D000007 ORTHO05D000017 8.6e-10 67.0 109 41.3
Ciclev10015432m.g Citrus clementina HOM05D000007 ORTHO05D000017 1.1e-09 66.6 129 33.3
Haze_06947 Corylus avellana HOM05D000007 ORTHO05D000017 1.1e-09 66.6 116 37.1
AUR62016933 Chenopodium quinoa HOM05D000007 ORTHO05D000017 1.5e-09 66.2 100 40.0
COL.COLO4_31895 Corchorus olitorius HOM05D000007 ORTHO05D000017 1.5e-09 66.2 106 36.8
COL.COLO4_31897 Corchorus olitorius HOM05D000007 ORTHO05D000017 1.5e-09 66.2 128 34.4
CANSAT56G1762 Cannabis sativa HOM05D000007 ORTHO05D000017 2.5e-09 65.5 101 38.6
MELO3C021691.2 Cucumis melo HOM05D000007 ORTHO05D000017 2.5e-09 65.5 111 35.1
Cpa.g.sc75.108 Carica papaya HOM05D000007 ORTHO05D000017 3.3e-09 65.1 130 30.8
Hma1.2p1_0187F.1_g081940 Hydrangea macrophylla HOM05D000007 ORTHO05D000017 3.3e-09 65.1 105 31.4
MD05G1358500 Malus domestica HOM05D000007 ORTHO05D000017 3.3e-09 65.1 106 37.7
Sc05g0008360 Simmondsia chinensis HOM05D000007 ORTHO05D000017 3.3e-09 65.1 113 33.6
CARHR253610 Cardamine hirsuta HOM05D000007 ORTHO05D000017 4.3e-09 64.7 130 33.8
Sabra16G0002800 Salix brachista HOM05D000007 ORTHO05D000017 4.3e-09 64.7 67 37.3
Sabra16G0015300 Salix brachista HOM05D000007 ORTHO05D000017 4.3e-09 64.7 67 37.3
Sc05g0008350 Simmondsia chinensis HOM05D000007 ORTHO05D000017 4.3e-09 64.7 93 36.6
COL.COLO4_06115 Corchorus olitorius HOM05D000007 ORTHO05D000017 5.6e-09 64.3 114 36.0
CsaV3_1G017240 Cucumis sativus L. HOM05D000007 ORTHO05D000017 5.6e-09 64.3 112 35.7
Gohir.D06G160400 Gossypium hirsutum HOM05D000007 ORTHO05D000017 5.6e-09 64.3 128 33.6
AUR62012551 Chenopodium quinoa HOM05D000007 ORTHO05D000017 7.3e-09 63.9 103 35.0
Gohir.A06G153600 Gossypium hirsutum HOM05D000007 ORTHO05D000017 7.3e-09 63.9 128 34.4
Gorai.010G187100 Gossypium raimondii HOM05D000007 ORTHO05D000017 7.3e-09 63.9 128 33.6
VMungo1215G0255 Vigna mungo HOM05D000007 ORTHO05D000017 7.3e-09 63.9 95 40.0
Glyma.17G008200 Glycine max HOM05D000007 ORTHO05D000017 9.5e-09 63.5 93 38.7
AT4G12560 Arabidopsis thaliana HOM05D000007 ORTHO05D000017 1.6e-08 62.8 130 33.8
DCAR_026597 Daucus carota HOM05D000007 ORTHO05D000017 1.6e-08 62.8 104 31.7
Eucgr.E03976 Eucalyptus grandis HOM05D000007 ORTHO05D000017 1.6e-08 62.8 96 35.4
Sed0024435 Sechium edule HOM05D000007 ORTHO05D000017 1.6e-08 62.8 115 37.4
Sc17g0007800 Simmondsia chinensis HOM05D000007 ORTHO05D000017 1.6e-08 62.8 110 32.7
Nitab4.5_0000271g0060 Nicotiana tabacum HOM05D000007 ORTHO05D000017 2.1e-08 62.4 102 35.3
Sc05g0008290 Simmondsia chinensis HOM05D000007 ORTHO05D000017 2.1e-08 62.4 66 43.9
Carub.0006s3183 Capsella rubella HOM05D000007 ORTHO05D000017 2.8e-08 62.0 130 33.1
Cc06_g09830 Coffea canephora HOM05D000007 ORTHO05D000017 2.8e-08 62.0 105 37.1
Phvul.003G084100 Phaseolus vulgaris HOM05D000007 ORTHO05D000017 2.8e-08 62.0 95 38.9
FvH4_3g00900 Fragaria vesca HOM05D000007 ORTHO05D000017 3.6e-08 61.6 115 36.5
Glyma.07G265800 Glycine max HOM05D000007 ORTHO05D000017 3.6e-08 61.6 93 37.6
Psat4g004720 Pisum sativum HOM05D000007 ORTHO05D000017 3.6e-08 61.6 103 36.9
QL05p069347 Quercus lobata HOM05D000007 ORTHO05D000017 3.6e-08 61.6 112 33.0
AUR62018133 Chenopodium quinoa HOM05D041986 ORTHO05D000017 4.7e-08 61.2 60 48.3
Glyma.15G115100 Glycine max HOM05D000007 ORTHO05D000017 4.7e-08 61.2 115 34.8
Lalb_Chr20g0119291 Lupinus albus HOM05D000007 ORTHO05D000017 4.7e-08 61.2 101 38.6
Potri.010G154700 Populus trichocarpa HOM05D000007 ORTHO05D000017 4.7e-08 61.2 67 35.8
Potri.016G012500 Populus trichocarpa HOM05D000007 ORTHO05D000017 4.7e-08 61.2 67 35.8
Haze_06942 Corylus avellana HOM05D000007 ORTHO05D000017 6.1e-08 60.8 108 35.2
DCAR_009419 Daucus carota HOM05D000007 ORTHO05D000017 6.1e-08 60.8 97 37.1
Sp6g04950 Schrenkiella parvula HOM05D000007 ORTHO05D000017 6.1e-08 60.8 130 33.1
COL.COLO4_07578 Corchorus olitorius HOM05D000007 ORTHO05D000017 8.0e-08 60.5 105 37.1
Thhalv10028697m.g Eutrema salsugineum HOM05D000007 ORTHO05D000017 8.0e-08 60.5 130 32.3
Gorai.004G021100 Gossypium raimondii HOM05D000007 ORTHO05D000017 8.0e-08 60.5 107 33.6
Psat1g175680 Pisum sativum HOM05D000007 ORTHO05D000017 8.0e-08 60.5 99 36.4
TWI34G0359 Tripterygium wilfordii HOM05D000007 ORTHO05D000017 8.0e-08 60.5 57 47.4
BcaB05g23737 Brassica carinata HOM05D000007 ORTHO05D000017 1.0e-07 60.1 130 33.1
Peaxi162Scf00231g00246 Petunia axillaris HOM05D000007 ORTHO05D000017 1.0e-07 60.1 117 34.2
Aa31LG9G10090 Aethionema arabicum HOM05D000007 ORTHO05D000017 1.4e-07 59.7 130 32.3
BcaC03g16267 Brassica carinata HOM05D000007 ORTHO05D000017 1.4e-07 59.7 130 33.1
BolC2t10085H Brassica oleracea HOM05D000007 ORTHO05D000017 1.4e-07 59.7 130 33.1
FAN21G2540 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.4e-07 59.7 115 34.8
Lj2C694T8 Lonicera japonica HOM05D000007 ORTHO05D000017 1.4e-07 59.7 95 40.0
Manes.09G077400 Manihot esculenta HOM05D000007 ORTHO05D000017 1.4e-07 59.7 129 31.8
Medtr2g025960 Medicago truncatula HOM05D000007 ORTHO05D000017 1.4e-07 59.7 113 31.9
C02p40630 Brassica napus HOM05D000007 ORTHO05D000017 1.8e-07 59.3 130 33.1
CANSAT56G3489 Cannabis sativa HOM05D000007 ORTHO05D000017 1.8e-07 59.3 110 32.7
Ca_00728_v3 Cicer arietinum L. HOM05D000007 ORTHO05D000017 1.8e-07 59.3 101 35.6
Lj4g0008928 Lotus japonicus HOM05D000007 ORTHO05D000017 1.8e-07 59.3 95 38.9
TPR.G36982 Trifolium pratense HOM05D000007 ORTHO05D000017 1.8e-07 59.3 103 35.9
AL6G47500 Arabidopsis lyrata HOM05D000007 ORTHO05D000017 2.3e-07 58.9 131 32.8
Gohir.D08G025733 Gossypium hirsutum HOM05D000007 ORTHO05D000017 2.3e-07 58.9 110 33.6
Lj2A693T15 Lonicera japonica HOM05D000007 ORTHO05D000017 2.3e-07 58.9 77 42.9
Rhsim05G0173800 Rhododendron simsii HOM05D000007 ORTHO05D000017 2.3e-07 58.9 108 34.3
COL.COLO4_06128 Corchorus olitorius HOM05D000007 ORTHO05D000017 3.0e-07 58.5 102 36.3
FAN25G3412 Fragaria x ananassa HOM05D000007 ORTHO05D000017 3.0e-07 58.5 115 33.9
Lj6g0017026 Lotus japonicus HOM05D000007 ORTHO05D000017 3.0e-07 58.5 102 34.3
Medtr2g026010 Medicago truncatula HOM05D000007 ORTHO05D000017 3.0e-07 58.5 115 34.8
Hma1.2p1_0657F.1_g197080 Hydrangea macrophylla HOM05D000007 ORTHO05D000017 5.2e-07 57.8 124 33.1
Medtr4g133170 Medicago truncatula HOM05D000007 ORTHO05D000017 5.2e-07 57.8 103 35.9
Peaxi162Scf00009g02529 Petunia axillaris HOM05D000007 ORTHO05D000017 5.2e-07 57.8 114 35.1
TWI34G0173 Tripterygium wilfordii HOM05D000007 ORTHO05D000017 5.2e-07 57.8 57 43.9
A02p25510 Brassica napus HOM05D000007 ORTHO05D000017 8.9e-07 57.0 123 33.3
BraA02t07538Z Brassica rapa HOM05D000007 ORTHO05D000017 8.9e-07 57.0 123 33.3
QL05p069384 Quercus lobata HOM05D000007 ORTHO05D000017 8.9e-07 57.0 119 36.1
THA.LOC104813618 Tarenaya hassleriana HOM05D000007 ORTHO05D000017 1.2e-06 56.6 131 32.8
arahy.Tifrunner.gnm1.ann1.DDZ1HR Arachis hypogaea HOM05D000007 ORTHO05D000017 1.5e-06 56.2 95 38.9
arahy.Tifrunner.gnm1.ann1.F3ZHRM Arachis hypogaea HOM05D000007 ORTHO05D000017 1.5e-06 56.2 95 38.9
PGR004G2079 Punica granatum HOM05D000007 ORTHO05D000017 1.5e-06 56.2 88 38.6
ECA234G3462 Erigeron canadensis HOM05D000007 ORTHO05D000017 2.0e-06 55.8 58 41.4
Ciclev10011877m.g Citrus clementina HOM05D000007 ORTHO05D000017 2.6e-06 55.5 126 32.5
Lj2A693T16 Lonicera japonica HOM05D000007 ORTHO05D000017 2.6e-06 55.5 86 39.5
AUR62012552 Chenopodium quinoa HOM05D000007 ORTHO05D000017 3.4e-06 55.1 108 32.4
Glyma.09G010600 Glycine max HOM05D000007 ORTHO05D000017 3.4e-06 55.1 108 35.2
HanXRQChr03g0066051 Helianthus annuus HOM05D000007 ORTHO05D000017 3.4e-06 55.1 57 36.8
Dinv31042 Davidia involucrata HOM05D000007 ORTHO05D000017 4.4e-06 54.7 89 37.1
Dinv31058 Davidia involucrata HOM05D000007 ORTHO05D000017 4.4e-06 54.7 89 37.1
Medtr1g068860 Medicago truncatula HOM05D000007 ORTHO05D000017 4.4e-06 54.7 115 28.7
Medtr2g028140 Medicago truncatula HOM05D000007 ORTHO05D000017 4.4e-06 54.7 73 38.4
Peaxi162Scf00047g00635 Petunia axillaris HOM05D000007 ORTHO05D000017 4.4e-06 54.7 105 30.5
PGR004G1883 Punica granatum HOM05D000007 ORTHO05D000017 4.4e-06 54.7 56 42.9
THA.LOC104806333 Tarenaya hassleriana HOM05D000007 ORTHO05D000017 4.4e-06 54.7 122 33.6
AUR62016932 Chenopodium quinoa HOM05D000007 ORTHO05D000017 5.7e-06 54.3 115 27.8
COL.COLO4_21619 Corchorus olitorius HOM05D000007 ORTHO05D000017 5.7e-06 54.3 99 31.3
Duzib151G0963 Durio zibethinus HOM05D000007 ORTHO05D000017 5.7e-06 54.3 70 40.0
HanXRQChr03g0066081 Helianthus annuus HOM05D000007 ORTHO05D000017 5.7e-06 54.3 55 45.5
Medtr1g068875 Medicago truncatula HOM05D000007 ORTHO05D000017 5.7e-06 54.3 109 29.4
Medtr4g070550 Medicago truncatula HOM05D000007 ORTHO05D000017 5.7e-06 54.3 73 37.0
PSO447G0041 Papaver somniferum HOM05D000007 ORTHO05D000017 9.8e-06 53.5 73 34.2


User provided reference genes

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