Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038913 Camellia sinensis var. sinensis HOM05D000173 ORTHO05D004400 2.7e-32 141.4 69 100.0
CSS0004352 Camellia sinensis var. sinensis HOM05D000173 ORTHO05D004400 5.4e-17 90.5 45 93.3
CSS0020862 Camellia sinensis var. sinensis HOM05D000173 ORTHO05D004400 5.4e-17 90.5 45 93.3
TWI81G0665 Tripterygium wilfordii HOM05D000173 ORTHO05D004400 5.4e-17 90.5 47 91.5
Dinv07362 Davidia involucrata HOM05D000173 ORTHO05D004400 9.3e-17 89.7 45 93.3
Rhsim12G0144100 Rhododendron simsii HOM05D000173 ORTHO05D004400 1.6e-16 89.0 45 91.1
Actinidia35080 Actinidia chinensis HOM05D000173 ORTHO05D004400 2.1e-16 88.6 45 88.9
TWI15G1235 Tripterygium wilfordii HOM05D000173 ORTHO05D004400 2.1e-16 88.6 47 89.4
CiPaw.15G127800 Carya illinoinensis HOM05D000173 ORTHO05D004400 4.6e-16 87.4 45 88.9
Sc04g0003650 Simmondsia chinensis HOM05D000173 ORTHO05D004400 4.6e-16 87.4 45 88.9
Manes.01G012800 Manihot esculenta HOM05D000173 ORTHO05D004400 6.0e-16 87.0 45 88.9
vmacro16454 Vaccinium macrocarpon HOM05D000173 ORTHO05D004400 6.0e-16 87.0 45 88.9
vmacro22486 Vaccinium macrocarpon HOM05D000173 ORTHO05D004400 6.0e-16 87.0 45 88.9
Glyma.03G107300 Glycine max HOM05D000173 ORTHO05D004400 7.8e-16 86.7 45 86.7
Lj9C429T7 Lonicera japonica HOM05D000173 ORTHO05D004400 7.8e-16 86.7 45 88.9
Hund24237 Selenicereus undatus HOM05D000173 ORTHO05D004400 1.0e-15 86.3 45 88.9
BcaC05g25737 Brassica carinata HOM05D000173 ORTHO05D004400 1.7e-15 85.5 67 61.2
Cc06_g15350 Coffea canephora HOM05D000173 ORTHO05D004400 1.7e-15 85.5 45 84.4
Phvul.010G044300 Phaseolus vulgaris HOM05D000173 ORTHO05D004400 1.7e-15 85.5 45 84.4
VMungo0331G0580 Vigna mungo HOM05D000173 ORTHO05D004400 1.7e-15 85.5 45 84.4
DCAR_011346 Daucus carota HOM05D000173 ORTHO05D004400 2.3e-15 85.1 45 86.7
FvH4_3g17390 Fragaria vesca HOM05D000173 ORTHO05D004400 2.3e-15 85.1 45 86.7
FAN11G2015 Fragaria x ananassa HOM05D000173 ORTHO05D004400 2.3e-15 85.1 45 86.7
FAN16G2607 Fragaria x ananassa HOM05D000173 ORTHO05D004400 2.3e-15 85.1 45 86.7
FAN21G3174 Fragaria x ananassa HOM05D000173 ORTHO05D004400 2.3e-15 85.1 45 86.7
FAN25G2209 Fragaria x ananassa HOM05D000173 ORTHO05D004400 2.3e-15 85.1 45 86.7
MD11G1273400 Malus domestica HOM05D000173 ORTHO05D004400 2.3e-15 85.1 45 86.7
RcHm_v2.0_Chr5g0028921 Rosa chinensis HOM05D000173 ORTHO05D004400 2.3e-15 85.1 45 86.7
Ah.09g233670 Amaranthus hybridus HOM05D000173 ORTHO05D004400 3.0e-15 84.7 45 86.7
arahy.Tifrunner.gnm1.ann1.1T6SIZ Arachis hypogaea HOM05D000173 ORTHO05D004400 3.0e-15 84.7 45 84.4
arahy.Tifrunner.gnm1.ann1.SSG76K Arachis hypogaea HOM05D000173 ORTHO05D004400 3.0e-15 84.7 45 84.4
Prupe.4G154200 Prunus persica HOM05D000173 ORTHO05D004400 3.0e-15 84.7 45 86.7
CiPaw.16G084900 Carya illinoinensis HOM05D000173 ORTHO05D004400 3.9e-15 84.3 45 86.7
Thhalv10018569m.g Eutrema salsugineum HOM05D000173 ORTHO05D004400 3.9e-15 84.3 45 86.7
Glyma.07G118800 Glycine max HOM05D000173 ORTHO05D004400 3.9e-15 84.3 45 84.4
Hma1.2p1_0340F.1_g129760 Hydrangea macrophylla HOM05D000173 ORTHO05D004400 3.9e-15 84.3 45 84.4
MD03G1252000 Malus domestica HOM05D000173 ORTHO05D004400 3.9e-15 84.3 45 86.7
FvH4_6g50670 Fragaria vesca HOM05D000173 ORTHO05D004400 5.1e-15 84.0 45 84.4
FAN14G1259 Fragaria x ananassa HOM05D000173 ORTHO05D004400 5.1e-15 84.0 45 84.4
FAN14G3847 Fragaria x ananassa HOM05D000173 ORTHO05D004400 5.1e-15 84.0 45 84.4
PGR042G0409 Punica granatum HOM05D000173 ORTHO05D004400 5.1e-15 84.0 45 86.7
CANSAT35G1697 Cannabis sativa HOM05D000173 ORTHO05D004400 6.6e-15 83.6 45 84.4
CDE07G0020 Ceratophyllum demersum HOM05D000173 ORTHO05D004400 6.6e-15 83.6 45 82.2
Ca_14793_v3 Cicer arietinum L. HOM05D000173 ORTHO05D004400 6.6e-15 83.6 45 82.2
Lj2g0020115 Lotus japonicus HOM05D000173 ORTHO05D004400 6.6e-15 83.6 45 82.2
Medtr5g066400 Medicago truncatula HOM05D000173 ORTHO05D004400 6.6e-15 83.6 45 82.2
Medtr8g464900 Medicago truncatula HOM05D000173 ORTHO05D004400 6.6e-15 83.6 45 82.2
Psat4g222600 Pisum sativum HOM05D000173 ORTHO05D004400 6.6e-15 83.6 45 82.2
PGR083G2056 Punica granatum HOM05D000173 ORTHO05D004400 6.6e-15 83.6 45 86.7
TPR.G32123 Trifolium pratense HOM05D000173 ORTHO05D004400 6.6e-15 83.6 45 82.2
Atru.chr9.786 Acer truncatum HOM05D000173 ORTHO05D004400 8.7e-15 83.2 45 84.4
BcaB07g31853 Brassica carinata HOM05D000173 ORTHO05D004400 8.7e-15 83.2 67 59.7
BcaNung05445 Brassica carinata HOM05D000173 ORTHO05D004400 8.7e-15 83.2 67 59.7
A06p14500 Brassica napus HOM05D000173 ORTHO05D004400 8.7e-15 83.2 67 59.7
C05p16720 Brassica napus HOM05D000173 ORTHO05D004400 8.7e-15 83.2 67 59.7
BolC5t30372H Brassica oleracea HOM05D000173 ORTHO05D004400 8.7e-15 83.2 67 59.7
BraA06t24575Z Brassica rapa HOM05D000173 ORTHO05D004400 8.7e-15 83.2 67 59.7
BraA08t34974Z Brassica rapa HOM05D000173 ORTHO05D004400 8.7e-15 83.2 67 59.7
Duzib150G1369 Durio zibethinus HOM05D000173 ORTHO05D004400 8.7e-15 83.2 45 84.4
Gohir.A13G215300 Gossypium hirsutum HOM05D000173 ORTHO05D004400 8.7e-15 83.2 45 84.4
Gohir.D13G219000 Gossypium hirsutum HOM05D000173 ORTHO05D004400 8.7e-15 83.2 45 84.4
Gorai.013G249800 Gossypium raimondii HOM05D000173 ORTHO05D004400 8.7e-15 83.2 45 84.4
Thecc.09G221900 Theobroma cacao HOM05D000173 ORTHO05D004400 8.7e-15 83.2 45 84.4
C08p18620 Brassica napus HOM05D000173 ORTHO05D004400 1.1e-14 82.8 67 58.2
BolC8t49489H Brassica oleracea HOM05D003541 ORTHO05D004095 1.1e-14 82.8 67 58.2
AUR62025878 Chenopodium quinoa HOM05D000173 ORTHO05D004400 1.1e-14 82.8 45 84.4
AUR62029850 Chenopodium quinoa HOM05D000173 ORTHO05D004400 1.1e-14 82.8 45 84.4
ECA236G4399 Erigeron canadensis HOM05D000173 ORTHO05D004400 1.1e-14 82.8 45 82.2
Eucgr.B00704 Eucalyptus grandis HOM05D000173 ORTHO05D004400 1.1e-14 82.8 45 80.0
THA.LOC104813899 Tarenaya hassleriana HOM05D000173 ORTHO05D004400 1.1e-14 82.8 45 84.4
Aa31LG7G3120 Aethionema arabicum HOM05D000173 ORTHO05D004400 1.5e-14 82.4 44 81.8
CAN.G77.13 Capsicum annuum HOM05D000173 ORTHO05D004400 1.5e-14 82.4 45 82.2
Cpa.g.sc13.24 Carica papaya HOM05D000173 ORTHO05D004400 1.5e-14 82.4 45 82.2
MELO3C017295.2 Cucumis melo HOM05D000173 ORTHO05D004400 1.5e-14 82.4 45 82.2
Thhalv10007641m.g Eutrema salsugineum HOM05D000173 ORTHO05D004400 1.5e-14 82.4 45 80.0
Nitab4.5_0000208g0190 Nicotiana tabacum HOM05D000173 ORTHO05D004400 1.5e-14 82.4 45 82.2
Peaxi162Scf00804g00008 Petunia axillaris HOM05D000173 ORTHO05D004400 1.5e-14 82.4 45 82.2
Sp1g16390 Schrenkiella parvula HOM05D000173 ORTHO05D004400 1.5e-14 82.4 45 80.0
Sed0004858 Sechium edule HOM05D000173 ORTHO05D004400 1.5e-14 82.4 45 82.2
EL10Ac5g11421 Beta vulgaris HOM05D000173 ORTHO05D004400 1.9e-14 82.0 45 84.4
BcaB03g12979 Brassica carinata HOM05D003541 ORTHO05D004095 1.9e-14 82.0 67 58.2
Duzib168G1916 Durio zibethinus HOM05D000173 ORTHO05D004400 1.9e-14 82.0 45 82.2
SHI30368 Sapria himalayana HOM05D000105 ORTHO05D000023 1.9e-14 82.0 44 81.8
Sp5g29110 Schrenkiella parvula HOM05D000173 ORTHO05D004400 1.9e-14 82.0 45 84.4
SGA_v2.0_scaffold62G21627 Striga asiatica HOM05D000173 ORTHO05D004400 1.9e-14 82.0 45 77.8
COL.COLO4_38438 Corchorus olitorius HOM05D000173 ORTHO05D004400 2.5e-14 81.6 45 80.0
CsaV3_1G003700 Cucumis sativus L. HOM05D000173 ORTHO05D004400 2.5e-14 81.6 45 82.2
HanXRQChr11g0323331 Helianthus annuus HOM05D000173 ORTHO05D004400 2.5e-14 81.6 45 82.2
Lsat_1_v5_gn_8_109740 Lactuca sativa HOM05D000173 ORTHO05D004400 2.5e-14 81.6 45 80.0
ATR0064G093 Amborella trichopoda HOM05D000173 ORTHO05D004400 3.3e-14 81.3 45 80.0
Aqoxy5G04178 Aquilegia oxysepala HOM05D000173 ORTHO05D004400 3.3e-14 81.3 45 80.0
A08p30410 Brassica napus HOM05D000173 ORTHO05D004400 3.3e-14 81.3 67 58.2
QL10p023744 Quercus lobata HOM05D000173 ORTHO05D004400 3.3e-14 81.3 45 80.0
Sed0017324 Sechium edule HOM05D000173 ORTHO05D004400 3.3e-14 81.3 45 80.0
CARHR019060 Cardamine hirsuta HOM05D000173 ORTHO05D004400 4.3e-14 80.9 45 82.2
CDE04G0761 Ceratophyllum demersum HOM05D000173 ORTHO05D004400 4.3e-14 80.9 45 80.0
Lalb_Chr07g0195271 Lupinus albus HOM05D000173 ORTHO05D004400 4.3e-14 80.9 43 83.7
Lalb_Chr12g0210411 Lupinus albus HOM05D000173 ORTHO05D004400 4.3e-14 80.9 45 80.0
Nn1g06280 Nelumbo nucifera HOM05D000173 ORTHO05D004400 4.3e-14 80.9 45 80.0
Solyc12g037980.2 Solanum lycopersicum HOM05D000173 ORTHO05D004400 4.3e-14 80.9 45 82.2
Sopen12g017690 Solanum pennellii HOM05D000173 ORTHO05D004400 4.3e-14 80.9 45 82.2
PGSC0003DMG400021766 Solanum tuberosum HOM05D000173 ORTHO05D004400 4.3e-14 80.9 45 82.2
AL1G30880 Arabidopsis lyrata HOM05D000173 ORTHO05D004400 7.3e-14 80.1 45 80.0
Carub.0001s1805 Capsella rubella HOM05D000173 ORTHO05D004400 7.3e-14 80.1 45 80.0
Carub.0001s1808 Capsella rubella HOM05D000173 ORTHO05D004400 7.3e-14 80.1 45 80.0
AT1G18450 Arabidopsis thaliana HOM05D000173 ORTHO05D004400 9.6e-14 79.7 45 77.8
arahy.Tifrunner.gnm1.ann1.NI3B5C Arachis hypogaea HOM05D000173 ORTHO05D004400 9.6e-14 79.7 45 77.8
Dinv40423 Davidia involucrata HOM05D000173 ORTHO05D004400 9.6e-14 79.7 45 84.4
PSO017G6263 Papaver somniferum HOM05D000173 ORTHO05D004400 9.6e-14 79.7 45 75.6
PSO063G4537 Papaver somniferum HOM05D000173 ORTHO05D004400 9.6e-14 79.7 45 75.6
SalBow5G1565 Salvia bowleyana HOM05D000173 ORTHO05D004400 9.6e-14 79.7 45 77.8
SalBow5G1673 Salvia bowleyana HOM05D000173 ORTHO05D004400 9.6e-14 79.7 45 77.8
SEGI_01343 Sequoiadendron giganteum HOM05D000173 ORTHO05D004400 9.6e-14 79.7 45 77.8
HPP92_025882 Vanilla planifolia HOM05D000173 ORTHO05D004400 1.6e-13 79.0 45 75.6
Migut.D01593 Erythranthe guttata HOM05D000173 ORTHO05D004400 2.1e-13 78.6 45 77.8
Oeu055898.1 Olea europaea HOM05D000173 ORTHO05D004400 2.1e-13 78.6 45 75.6
Potri.012G061300 Populus trichocarpa HOM05D000173 ORTHO05D004400 2.8e-13 78.2 47 78.7
Zm00001eb000800 Zea mays HOM05D000173 ORTHO05D004400 8.1e-13 76.6 45 68.9
Aqoxy2G03970 Aquilegia oxysepala HOM05D000173 ORTHO05D004400 1.1e-12 76.3 45 73.3
Mapoly0063s0059 Marchantia polymorpha HOM05D000173 ORTHO05D004400 1.4e-12 75.9 45 66.7
unitig_736.g22474 Utricularia gibba HOM05D000173 ORTHO05D004400 1.4e-12 75.9 47 70.2
Os08g0137200 Oryza sativa ssp. japonica HOM05D000173 ORTHO05D004400 1.8e-12 75.5 45 68.9
Potri.015G053100 Populus trichocarpa HOM05D000173 ORTHO05D004400 3.1e-12 74.7 45 77.8
Glyma.08G040300 Glycine max HOM05D000173 ORTHO05D004400 5.3e-12 73.9 45 73.3
Lalb_Chr05g0222631 Lupinus albus HOM05D000173 ORTHO05D004400 6.9e-12 73.6 45 71.1
Oeu024320.1 Olea europaea HOM05D000173 ORTHO05D004400 6.9e-12 73.6 44 72.7
AagrBONN_evm.TU.Sc2ySwM_228.3208 Anthoceros agrestis HOM05D000173 ORTHO05D004400 1.5e-11 72.4 45 66.7
MSTRG.4553 Avicennia marina HOM05D000173 ORTHO05D004400 2.0e-11 72.0 45 71.1
Medtr8g007440 Medicago truncatula HOM05D000173 ORTHO05D004400 9.9e-11 69.7 45 75.6
MSTRG.9268 Avicennia marina HOM05D000173 ORTHO05D004400 1.7e-10 68.9 66 51.5
Pp3c9_24230 Physcomitrium patens HOM05D000173 ORTHO05D004400 4.9e-10 67.4 45 64.4
Pp3c15_24010 Physcomitrium patens HOM05D000173 ORTHO05D004400 1.4e-09 65.9 45 62.2
SMO347G0056 Selaginella moellendorffii HOM05D000173 ORTHO05D004400 9.3e-09 63.2 45 64.4
CBR_g46675 Chara braunii HOM05D000173 ORTHO05D004400 1.1e-06 56.2 45 53.3
CBR_g46712 Chara braunii HOM05D000173 ORTHO05D004400 1.5e-06 55.8 45 53.3


User provided reference genes

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