Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038842 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 3.7e-108 394.8 189 100.0
vmacro18202 Vaccinium macrocarpon HOM05D003823 ORTHO05D004866 4.3e-40 168.7 157 59.2
Rhsim08G0068000 Rhododendron simsii HOM05D003823 ORTHO05D004866 5.6e-40 168.3 155 60.0
CSS0031728 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.6e-39 166.8 157 58.0
CSS0041610 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.6e-39 166.8 157 58.0
CSS0049183 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.6e-39 166.8 157 58.0
Actinidia02709 Actinidia chinensis HOM05D003823 ORTHO05D004866 2.1e-39 166.4 157 58.6
Dinv06526 Davidia involucrata HOM05D003823 ORTHO05D004866 2.1e-39 166.4 157 58.0
Lsat_1_v5_gn_2_88881 Lactuca sativa HOM05D003823 ORTHO05D004866 2.1e-39 166.4 157 58.6
ATR0564G299 Amborella trichopoda HOM05D003823 ORTHO05D004866 2.8e-39 166.0 157 58.0
Os02g0265400 Oryza sativa ssp. japonica HOM05D003823 ORTHO05D004866 2.8e-39 166.0 157 58.0
Cc07_g03190 Coffea canephora HOM05D003823 ORTHO05D004866 3.6e-39 165.6 157 58.0
PSO017G2864 Papaver somniferum HOM05D003823 ORTHO05D004866 4.7e-39 165.2 157 57.3
ECA238G0538 Erigeron canadensis HOM05D003823 ORTHO05D004866 6.2e-39 164.9 157 57.3
Nn8g40950 Nelumbo nucifera HOM05D003823 ORTHO05D004866 8.1e-39 164.5 155 57.4
CDE02G3183 Ceratophyllum demersum HOM05D003823 ORTHO05D004866 1.1e-38 164.1 157 56.1
CDE09G0968 Ceratophyllum demersum HOM05D005655 ORTHO05D007386 1.1e-38 164.1 157 56.7
PGR083G1126 Punica granatum HOM05D003823 ORTHO05D004866 1.1e-38 164.1 157 56.7
Zm00001eb203950 Zea mays HOM05D003823 ORTHO05D004866 1.1e-38 164.1 157 57.3
MBI02_g36598_MAGBIO Magnolia biondii HOM05D003823 ORTHO05D004866 1.4e-38 163.7 157 56.7
PSO478G3470 Papaver somniferum HOM05D003823 ORTHO05D004866 1.4e-38 163.7 157 56.7
TPR.G25673 Trifolium pratense HOM05D003823 ORTHO05D004866 1.4e-38 163.7 177 52.5
Aqoxy3G03322 Aquilegia oxysepala HOM05D003823 ORTHO05D004866 2.4e-38 162.9 157 56.7
CSS0031561 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 3.1e-38 162.5 157 58.0
Atru.chr4.927 Acer truncatum HOM05D003823 ORTHO05D004866 4.0e-38 162.2 157 56.1
HanXRQChr14g0449901 Helianthus annuus HOM05D003823 ORTHO05D004866 4.0e-38 162.2 157 55.4
Nn4g23085 Nelumbo nucifera HOM05D003823 ORTHO05D004866 4.0e-38 162.2 155 56.8
Psat2g025840 Pisum sativum HOM05D003823 ORTHO05D004866 4.0e-38 162.2 177 52.0
AUR62027457 Chenopodium quinoa HOM05D003823 ORTHO05D004866 5.3e-38 161.8 157 56.1
AUR62031242 Chenopodium quinoa HOM05D003823 ORTHO05D004866 5.3e-38 161.8 157 56.1
Ca_06062_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 5.3e-38 161.8 177 52.0
Ca_30714_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 5.3e-38 161.8 177 52.0
Ciclev10032832m.g Citrus clementina HOM05D003823 ORTHO05D004866 5.3e-38 161.8 159 54.1
MBI05_g00394_MAGBIO Magnolia biondii HOM05D000046 ORTHO05D000195 5.3e-38 161.8 155 55.5
TAR374G1522 Trochodendron aralioides HOM05D003823 ORTHO05D004866 5.3e-38 161.8 157 56.1
HanXRQChr02g0056361 Helianthus annuus HOM05D003823 ORTHO05D004866 6.9e-38 161.4 157 56.1
HPP92_020326 Vanilla planifolia HOM05D003823 ORTHO05D004866 6.9e-38 161.4 158 55.1
Manes.05G098825 Manihot esculenta HOM05D003823 ORTHO05D004866 9.0e-38 161.0 157 55.4
Medtr5g085380 Medicago truncatula HOM05D003823 ORTHO05D004866 9.0e-38 161.0 177 51.4
Potri.001G354000 Populus trichocarpa HOM05D003823 ORTHO05D004866 9.0e-38 161.0 159 54.7
Zm00001eb237810 Zea mays HOM05D003823 ORTHO05D004866 9.0e-38 161.0 157 56.7
TAR622G1107 Trochodendron aralioides HOM05D003823 ORTHO05D004866 1.2e-37 160.6 157 55.4
Atru.chr11.1839 Acer truncatum HOM05D003823 ORTHO05D004866 1.5e-37 160.2 157 55.4
Eucgr.K02462 Eucalyptus grandis HOM05D003823 ORTHO05D004866 1.5e-37 160.2 156 55.8
Psat5g111480 Pisum sativum HOM05D003823 ORTHO05D004866 2.0e-37 159.8 157 55.4
Sabra16G0232900 Salix brachista HOM05D003823 ORTHO05D004866 2.0e-37 159.8 159 54.1
CANSAT80G0583 Cannabis sativa HOM05D003823 ORTHO05D004866 2.6e-37 159.5 157 55.4
CiPaw.11G041500 Carya illinoinensis HOM05D003823 ORTHO05D004866 2.6e-37 159.5 157 55.4
Medtr3g080480 Medicago truncatula HOM05D003823 ORTHO05D004866 2.6e-37 159.5 157 55.4
Potri.011G077900 Populus trichocarpa HOM05D003823 ORTHO05D004866 2.6e-37 159.5 159 54.1
ClCG06G016300 Citrullus lanatus HOM05D003823 ORTHO05D004866 3.4e-37 159.1 157 54.8
COL.COLO4_22965 Corchorus olitorius HOM05D003823 ORTHO05D004866 3.4e-37 159.1 157 54.1
MELO3C017163.2 Cucumis melo HOM05D003823 ORTHO05D004866 3.4e-37 159.1 157 54.8
CsaV3_1G002230 Cucumis sativus L. HOM05D003823 ORTHO05D004866 3.4e-37 159.1 157 54.8
Dinv38684 Davidia involucrata HOM05D003823 ORTHO05D004866 3.4e-37 159.1 157 54.8
Glyma.02G268600 Glycine max HOM05D003823 ORTHO05D004866 3.4e-37 159.1 157 54.8
QL10p016165 Quercus lobata HOM05D003823 ORTHO05D004866 3.4e-37 159.1 157 55.4
Sed0017565 Sechium edule HOM05D003823 ORTHO05D004866 3.4e-37 159.1 157 54.8
Duzib268G0082 Durio zibethinus HOM05D003823 ORTHO05D004866 4.4e-37 158.7 157 54.1
QL93p0043_0002 Quercus lobata HOM05D003823 ORTHO05D004866 4.4e-37 158.7 155 56.1
VMungo0647G1166 Vigna mungo HOM05D003823 ORTHO05D004866 4.4e-37 158.7 155 55.5
GSVIVG01020043001 Vitis vinifera HOM05D003823 ORTHO05D004866 4.4e-37 158.7 157 54.8
Ca_16285_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 5.8e-37 158.3 157 54.8
Lalb_Chr25g0280071 Lupinus albus HOM05D003823 ORTHO05D004866 5.8e-37 158.3 157 54.8
Phvul.008G213700 Phaseolus vulgaris HOM05D003823 ORTHO05D004866 5.8e-37 158.3 155 54.8
Sc12g0006240 Simmondsia chinensis HOM05D003823 ORTHO05D004866 5.8e-37 158.3 157 54.8
Duzib251G0021 Durio zibethinus HOM05D003823 ORTHO05D004866 7.6e-37 157.9 157 54.8
Gohir.A11G029891 Gossypium hirsutum HOM05D003823 ORTHO05D004866 7.6e-37 157.9 157 55.4
MD06G1190100 Malus domestica HOM05D003823 ORTHO05D004866 7.6e-37 157.9 157 54.8
MD14G1197000 Malus domestica HOM05D003823 ORTHO05D004866 7.6e-37 157.9 157 54.8
Cpa.g.sc388.5 Carica papaya HOM05D003823 ORTHO05D004866 9.9e-37 157.5 157 54.1
Gohir.A12G166100 Gossypium hirsutum HOM05D003823 ORTHO05D004866 9.9e-37 157.5 157 54.1
Gohir.D12G169500 Gossypium hirsutum HOM05D003823 ORTHO05D004866 9.9e-37 157.5 157 54.1
TPR.G29042 Trifolium pratense HOM05D003823 ORTHO05D004866 9.9e-37 157.5 157 54.8
GSVIVG01008037001 Vitis vinifera HOM05D003823 ORTHO05D004866 9.9e-37 157.5 157 54.8
SEGI_34945 Sequoiadendron giganteum HOM05D003823 ORTHO05D004866 1.3e-36 157.1 153 55.6
Thecc.02G351700 Theobroma cacao HOM05D003823 ORTHO05D004866 1.7e-36 156.8 155 54.2
Sed0002791 Sechium edule HOM05D003823 ORTHO05D004866 2.2e-36 156.4 155 54.8
PGSC0003DMG400018144 Solanum tuberosum HOM05D003823 ORTHO05D004866 2.2e-36 156.4 157 54.8
Migut.D02333 Erythranthe guttata HOM05D003823 ORTHO05D004866 2.9e-36 156.0 157 54.1
FvH4_5g15250 Fragaria vesca HOM05D003823 ORTHO05D004866 2.9e-36 156.0 157 54.1
FAN04G0558 Fragaria x ananassa HOM05D003823 ORTHO05D004866 2.9e-36 156.0 157 54.1
FAN08G0194 Fragaria x ananassa HOM05D003823 ORTHO05D004866 2.9e-36 156.0 157 54.1
FAN13G2005 Fragaria x ananassa HOM05D003823 ORTHO05D004866 2.9e-36 156.0 157 54.1
FAN18G4237 Fragaria x ananassa HOM05D003823 ORTHO05D004866 2.9e-36 156.0 157 54.1
Glyma.14G048800 Glycine max HOM05D003823 ORTHO05D004866 2.9e-36 156.0 157 54.1
Gorai.008G182100 Gossypium raimondii HOM05D003823 ORTHO05D004866 2.9e-36 156.0 157 54.1
RcHm_v2.0_Chr7g0180841 Rosa chinensis HOM05D003823 ORTHO05D004866 2.9e-36 156.0 157 54.1
Cc04_g17180 Coffea canephora HOM05D003823 ORTHO05D004866 3.8e-36 155.6 157 53.5
Gohir.D11G033300 Gossypium hirsutum HOM05D003823 ORTHO05D004866 3.8e-36 155.6 157 54.8
Gorai.007G036100 Gossypium raimondii HOM05D003823 ORTHO05D004866 3.8e-36 155.6 157 54.8
Manes.14G076100 Manihot esculenta HOM05D003823 ORTHO05D004866 3.8e-36 155.6 157 54.1
SalBow6G5762 Salvia bowleyana HOM05D003823 ORTHO05D004866 3.8e-36 155.6 157 54.1
Hund02662 Selenicereus undatus HOM05D003823 ORTHO05D004866 3.8e-36 155.6 157 52.9
TAR729G0007 Trochodendron aralioides HOM05D003823 ORTHO05D004866 3.8e-36 155.6 157 54.8
EL10Ac8g19266 Beta vulgaris HOM05D003823 ORTHO05D004866 4.9e-36 155.2 155 54.2
Cfa018968 Carpinus fangiana HOM05D000046 ORTHO05D004866 4.9e-36 155.2 157 54.1
Peaxi162Scf00009g00217 Petunia axillaris HOM05D003823 ORTHO05D004866 4.9e-36 155.2 157 54.1
TWI60G1055 Tripterygium wilfordii HOM05D003823 ORTHO05D004866 4.9e-36 155.2 157 54.1
TWI81G0804 Tripterygium wilfordii HOM05D003823 ORTHO05D004866 4.9e-36 155.2 157 54.1
Lj4g0027914 Lotus japonicus HOM05D003823 ORTHO05D004866 6.4e-36 154.8 158 53.2
Prupe.5G189200 Prunus persica HOM05D003823 ORTHO05D004866 6.4e-36 154.8 157 54.1
Solyc03g113020.3 Solanum lycopersicum HOM05D003823 ORTHO05D004866 6.4e-36 154.8 157 54.1
Sopen03g032100 Solanum pennellii HOM05D003823 ORTHO05D004866 6.4e-36 154.8 157 54.1
Ciclev10022411m.g Citrus clementina HOM05D003823 ORTHO05D004866 1.1e-35 154.1 157 54.1
Nitab4.5_0012727g0030 Nicotiana tabacum HOM05D003823 ORTHO05D004866 1.1e-35 154.1 155 53.5
Thecc.03G082400 Theobroma cacao HOM05D003823 ORTHO05D004866 1.1e-35 154.1 157 54.8
MSTRG.9636 Avicennia marina HOM05D003823 ORTHO05D004866 1.9e-35 153.3 155 54.2
BcaB01g00874 Brassica carinata HOM05D003823 ORTHO05D004866 2.4e-35 152.9 157 52.9
Duzib084G0821 Durio zibethinus HOM05D003823 ORTHO05D004866 2.4e-35 152.9 157 53.5
Mapoly0081s0078 Marchantia polymorpha HOM05D003823 ORTHO05D004866 2.4e-35 152.9 157 51.6
Nitab4.5_0000785g0070 Nicotiana tabacum HOM05D003823 ORTHO05D004866 2.4e-35 152.9 157 53.5
Nitab4.5_0010010g0030 Nicotiana tabacum HOM05D003823 ORTHO05D004866 2.4e-35 152.9 157 53.5
BcaC01g01774 Brassica carinata HOM05D003823 ORTHO05D004866 3.2e-35 152.5 157 52.2
C03p72020 Brassica napus HOM05D003823 ORTHO05D004866 3.2e-35 152.5 157 52.2
BolC3t19499H Brassica oleracea HOM05D003823 ORTHO05D004866 3.2e-35 152.5 157 52.2
CAN.G1305.7 Capsicum annuum HOM05D003823 ORTHO05D004866 3.2e-35 152.5 157 53.5
Aa31LG4G16460 Aethionema arabicum HOM05D003823 ORTHO05D004866 4.2e-35 152.1 158 51.3
A06p27290 Brassica napus HOM05D003823 ORTHO05D004866 5.4e-35 151.8 157 52.2
BraA06t25670Z Brassica rapa HOM05D003823 ORTHO05D004866 5.4e-35 151.8 157 52.2
Migut.D02334 Erythranthe guttata HOM05D003823 ORTHO05D004866 5.4e-35 151.8 159 52.2
Oeu022626.1 Olea europaea HOM05D003823 ORTHO05D004866 5.4e-35 151.8 157 52.2
THA.LOC104821437 Tarenaya hassleriana HOM05D003823 ORTHO05D004866 7.1e-35 151.4 157 52.2
CARHR156490 Cardamine hirsuta HOM05D003823 ORTHO05D004866 9.3e-35 151.0 157 51.6
Sp5g14150 Schrenkiella parvula HOM05D003823 ORTHO05D004866 9.3e-35 151.0 157 52.2
A06p19840 Brassica napus HOM05D003823 ORTHO05D004866 1.2e-34 150.6 157 52.2
BraA06t25064Z Brassica rapa HOM05D003823 ORTHO05D004866 1.2e-34 150.6 157 52.2
Pp3c11_12990 Physcomitrium patens HOM05D003823 ORTHO05D004866 1.6e-34 150.2 157 51.6
Actinidia37644 Actinidia chinensis HOM05D003823 ORTHO05D004866 2.1e-34 149.8 157 51.6
BcaC01g02292 Brassica carinata HOM05D003823 ORTHO05D004866 2.1e-34 149.8 157 52.2
C03p66970 Brassica napus HOM05D003823 ORTHO05D004866 2.1e-34 149.8 157 52.2
BolC3t18970H Brassica oleracea HOM05D003823 ORTHO05D004866 2.1e-34 149.8 157 52.2
Thhalv10010746m.g Eutrema salsugineum HOM05D003823 ORTHO05D004866 2.7e-34 149.4 157 51.6
THA.LOC104819434 Tarenaya hassleriana HOM05D003823 ORTHO05D004866 2.7e-34 149.4 157 52.2
Pp3c7_13070 Physcomitrium patens HOM05D003823 ORTHO05D004866 3.5e-34 149.1 157 51.6
Eucgr.G00164 Eucalyptus grandis HOM05D003823 ORTHO05D004866 6.0e-34 148.3 156 53.2
Dinv19933 Davidia involucrata HOM05D003823 ORTHO05D004866 7.8e-34 147.9 157 51.6
Lj5A113G71 Lonicera japonica HOM05D003823 ORTHO05D004866 7.8e-34 147.9 157 51.0
SGA_v2.0_scaffold193G40709 Striga asiatica HOM05D003823 ORTHO05D004866 7.8e-34 147.9 155 52.9
AL5G27100 Arabidopsis lyrata HOM05D003823 ORTHO05D004866 1.0e-33 147.5 158 50.6
AT3G47810 Arabidopsis thaliana HOM05D003823 ORTHO05D004866 1.0e-33 147.5 158 50.6
Carub.0005s1392 Capsella rubella HOM05D003823 ORTHO05D004866 1.3e-33 147.1 158 51.3
CSS0019545 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.7e-33 146.7 158 54.4
BcaB02g10689 Brassica carinata HOM05D003823 ORTHO05D004866 2.3e-33 146.4 157 51.0
DCAR_026066 Daucus carota HOM05D003823 ORTHO05D004866 3.0e-33 146.0 161 50.3
Rhsim08G0157700 Rhododendron simsii HOM05D003823 ORTHO05D004866 3.9e-33 145.6 157 49.7
Haze_07352 Corylus avellana HOM05D003823 ORTHO05D004866 5.1e-33 145.2 195 45.1
SMO116G0153 Selaginella moellendorffii HOM05D003823 ORTHO05D004866 1.1e-32 144.1 157 49.0
Oeu006179.1 Olea europaea HOM05D003823 ORTHO05D004866 3.3e-32 142.5 155 51.0
Eucgr.G00114 Eucalyptus grandis HOM05D003823 ORTHO05D004866 1.4e-30 137.1 153 51.6
CBR_g29439 Chara braunii HOM05D003823 ORTHO05D004866 4.0e-30 135.6 157 45.9
Manes.01G188500 Manihot esculenta HOM05D003823 ORTHO05D004866 1.9e-27 126.7 140 48.6
Actinidia17538 Actinidia chinensis HOM05D003823 ORTHO05D004866 2.4e-27 126.3 137 51.1
CSS0004961 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 3.9e-25 119.0 150 48.7
Lj4A511G17 Lonicera japonica HOM05D003823 ORTHO05D004866 1.1e-16 90.9 61 77.0
CSS0033378 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.9e-16 90.1 45 88.9
Sabra15G0049800 Salix brachista HOM05D003823 ORTHO05D000412 1.9e-16 90.1 79 64.6
Gohir.D02G085100 Gossypium hirsutum HOM05D003823 ORTHO05D004866 2.1e-15 86.7 45 82.2
Gohir.D06G139701 Gossypium hirsutum HOM05D003823 ORTHO05D017994 2.1e-15 86.7 45 82.2
Gorai.005G191600 Gossypium raimondii HOM05D003823 ORTHO05D004866 2.1e-15 86.7 45 82.2
Gorai.007G237600 Gossypium raimondii HOM05D003823 ORTHO05D004866 2.1e-15 86.7 45 82.2
Gorai.008G100600 Gossypium raimondii HOM05D003823 ORTHO05D004866 2.1e-15 86.7 45 82.2
Gohir.A05G198301 Gossypium hirsutum HOM05D003823 ORTHO05D004866 4.8e-15 85.5 56 67.9
Gohir.A08G078101 Gossypium hirsutum HOM05D003823 ORTHO05D004866 8.2e-15 84.7 51 72.5
Gorai.003G098000 Gossypium raimondii HOM05D003823 ORTHO05D017994 8.2e-15 84.7 45 80.0
unitig_0.g782 Utricularia gibba HOM05D003823 ORTHO05D004866 1.4e-14 84.0 47 72.3
Gohir.A01G072501 Gossypium hirsutum HOM05D003823 ORTHO05D017994 1.8e-14 83.6 45 80.0
Gohir.A05G203200 Gossypium hirsutum HOM05D003823 ORTHO05D017994 1.8e-14 83.6 45 80.0
Gohir.A10G203700 Gossypium hirsutum HOM05D003823 ORTHO05D017994 1.8e-14 83.6 45 80.0
Gohir.A12G000600 Gossypium hirsutum HOM05D003823 ORTHO05D017994 1.8e-14 83.6 45 80.0
Gohir.D03G122233 Gossypium hirsutum HOM05D003823 ORTHO05D004866 1.8e-14 83.6 45 80.0
Gohir.D06G205050 Gossypium hirsutum HOM05D003823 ORTHO05D017994 1.8e-14 83.6 45 80.0
Gohir.D08G111400 Gossypium hirsutum HOM05D003823 ORTHO05D017994 1.8e-14 83.6 45 80.0
Thecc.02G319100 Theobroma cacao HOM05D003823 ORTHO05D004866 1.8e-14 83.6 61 68.9
Lj4A501G12 Lonicera japonica HOM05D003823 ORTHO05D004866 1.5e-13 80.5 57 71.9
Gohir.D06G082500 Gossypium hirsutum HOM05D003823 ORTHO05D017994 1.9e-11 73.6 45 75.6
MCO13G641 Micromonas commoda HOM05D003823 ORTHO05D004866 1.9e-11 73.6 159 30.2
Atru.chr9.2289 Acer truncatum HOM05D003823 ORTHO05D004866 3.5e-10 69.3 105 43.8
Cre12.g499900 Chlamydomonas reinhardtii HOM05D003823 ORTHO05D004866 1.5e-08 63.9 157 30.6
Gorai.013G138400 Gossypium raimondii HOM05D003823 ORTHO05D004866 1.9e-08 63.5 37 73.0
Lj4g0026130 Lotus japonicus HOM05D003823 ORTHO05D004866 3.7e-07 59.3 61 54.1


User provided reference genes

Program Settings