Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038746 Camellia sinensis var. sinensis HOM05D004087 ORTHO05D004787 1.3e-65 253.1 140 100.0
Actinidia01168 Actinidia chinensis HOM05D004087 ORTHO05D004787 5.4e-32 141.4 137 64.2
Rhsim12G0127500 Rhododendron simsii HOM05D004087 ORTHO05D004787 1.9e-29 132.9 136 56.6
CiPaw.06G078300 Carya illinoinensis HOM05D004087 ORTHO05D004787 5.8e-18 94.7 132 53.0
GSVIVG01020122001 Vitis vinifera HOM05D004087 ORTHO05D004787 9.3e-16 87.4 138 47.1
Duzib268G0252 Durio zibethinus HOM05D004087 ORTHO05D004787 4.8e-12 75.1 137 43.1
Actinidia12283 Actinidia chinensis HOM05D004087 ORTHO05D004787 1.4e-11 73.6 70 70.0
Haze_12080 Corylus avellana HOM05D004087 ORTHO05D004787 1.4e-11 73.6 133 42.1
Potri.008G190900 Populus trichocarpa HOM05D004087 ORTHO05D004787 1.5e-10 70.1 75 57.3
Aqoxy3G03190 Aquilegia oxysepala HOM05D004087 ORTHO05D004787 2.6e-10 69.3 81 59.3
TWI36G1524 Tripterygium wilfordii HOM05D004087 ORTHO05D004787 4.5e-10 68.6 80 51.2
Hma1.2p1_0289F.1_g114450 Hydrangea macrophylla HOM05D004087 ORTHO05D004787 7.6e-10 67.8 154 38.3
Phvul.002G079300 Phaseolus vulgaris HOM05D004087 ORTHO05D004787 7.6e-10 67.8 138 41.3
Sabra08G0144800 Salix brachista HOM05D004087 ORTHO05D004787 7.6e-10 67.8 66 60.6
TAR622G0570 Trochodendron aralioides HOM05D004087 ORTHO05D004787 7.6e-10 67.8 70 58.6
Lj2g0011291 Lotus japonicus HOM05D004087 ORTHO05D004787 1.3e-09 67.0 139 45.3
Glyma.01G039100 Glycine max HOM05D004087 ORTHO05D004787 1.7e-09 66.6 139 41.7
VMungo1215G1106 Vigna mungo HOM05D004087 ORTHO05D004787 2.2e-09 66.2 138 40.6
Manes.05G094600 Manihot esculenta HOM05D004087 ORTHO05D004787 3.8e-09 65.5 136 37.5
Ciclev10032809m.g Citrus clementina HOM05D004087 ORTHO05D004787 8.5e-09 64.3 139 38.8
Gohir.A04G096700 Gossypium hirsutum HOM05D004087 ORTHO05D004787 8.5e-09 64.3 136 39.0
TPR.G26706 Trifolium pratense HOM05D004087 ORTHO05D004787 1.1e-08 63.9 102 44.1
MBI01_g41231_MAGBIO Magnolia biondii HOM05D004087 ORTHO05D004787 1.9e-08 63.2 70 54.3
Medtr5g037230 Medicago truncatula HOM05D004087 ORTHO05D004787 3.2e-08 62.4 127 40.2
vmacro16306 Vaccinium macrocarpon HOM05D004087 ORTHO05D004787 3.2e-08 62.4 87 50.6
Gohir.D04G136500 Gossypium hirsutum HOM05D004087 ORTHO05D004787 4.2e-08 62.0 136 38.2
Gorai.012G120300 Gossypium raimondii HOM05D004087 ORTHO05D004787 4.2e-08 62.0 136 38.2
Cpa.g.sc5.304 Carica papaya HOM05D004087 ORTHO05D004787 5.5e-08 61.6 131 35.9
Nitab4.5_0013199g0010 Nicotiana tabacum HOM05D004087 ORTHO05D004787 7.2e-08 61.2 136 44.9
Lalb_Chr05g0217411 Lupinus albus HOM05D004087 ORTHO05D004787 9.3e-08 60.8 136 41.9
COL.COLO4_36242 Corchorus olitorius HOM05D004087 ORTHO05D004787 2.1e-07 59.7 38 78.9
PGR119G1273 Punica granatum HOM05D004087 ORTHO05D004787 2.1e-07 59.7 39 74.4
Sopen04g001140 Solanum pennellii HOM05D004087 ORTHO05D004787 2.7e-07 59.3 39 74.4
Nitab4.5_0000710g0070 Nicotiana tabacum HOM05D004087 ORTHO05D004787 3.6e-07 58.9 141 44.7
Cfa009049 Carpinus fangiana HOM05D004087 ORTHO05D004787 4.6e-07 58.5 133 38.3
PSO832G0995 Papaver somniferum HOM05D004087 ORTHO05D004787 4.6e-07 58.5 41 68.3
Eucgr.B02582 Eucalyptus grandis HOM05D004087 ORTHO05D004787 7.9e-07 57.8 122 36.9
CAN.G300.5 Capsicum annuum HOM05D004087 ORTHO05D004787 1.0e-06 57.4 134 46.3
Solyc04g005120.3 Solanum lycopersicum HOM05D004087 ORTHO05D004787 1.0e-06 57.4 133 47.4
Atru.chr11.1891 Acer truncatum HOM05D004087 ORTHO05D004787 1.3e-06 57.0 70 57.1
THA.LOC104822080 Tarenaya hassleriana HOM05D004087 ORTHO05D004787 1.3e-06 57.0 39 66.7
Sp5g25060 Schrenkiella parvula HOM05D004087 ORTHO05D004787 1.8e-06 56.6 127 44.9
Nn1g03866 Nelumbo nucifera HOM05D004087 ORTHO05D004787 3.0e-06 55.8 78 53.8
Psat2g117160 Pisum sativum HOM05D004087 ORTHO05D004787 3.0e-06 55.8 38 68.4
Thhalv10019201m.g Eutrema salsugineum HOM05D004087 ORTHO05D004787 3.9e-06 55.5 38 68.4
Peaxi162Scf00187g00617 Petunia axillaris HOM05D004087 ORTHO05D004787 3.9e-06 55.5 39 69.2
AL2G29180 Arabidopsis lyrata HOM05D004087 ORTHO05D004787 5.1e-06 55.1 38 68.4
AT1G69935 Arabidopsis thaliana HOM05D004087 ORTHO05D004787 5.1e-06 55.1 38 68.4
PSO591G0142 Papaver somniferum HOM05D004087 ORTHO05D004787 5.1e-06 55.1 118 45.8
BcaC08g46444 Brassica carinata HOM05D004087 ORTHO05D004787 6.7e-06 54.7 131 36.6
BolC6t39453H Brassica oleracea HOM05D004087 ORTHO05D004787 6.7e-06 54.7 131 36.6
A07p36390 Brassica napus HOM05D004087 ORTHO05D004787 8.7e-06 54.3 38 71.1
BraA07t31211Z Brassica rapa HOM05D004087 ORTHO05D004787 8.7e-06 54.3 38 71.1


User provided reference genes

Program Settings