Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038737 Camellia sinensis var. sinensis HOM05D003039 ORTHO05D008410 5.1e-159 564.3 275 100.0
Lj1P893G46 Lonicera japonica HOM05D003039 ORTHO05D008410 6.4e-93 344.7 368 52.4
CSS0033752 Camellia sinensis var. sinensis HOM05D003039 ORTHO05D008410 8.9e-87 324.3 340 57.1
TAR633G1464 Trochodendron aralioides HOM05D003039 ORTHO05D008410 1.2e-86 323.9 365 50.1
CSS0020082 Camellia sinensis var. sinensis HOM05D003039 ORTHO05D008410 5.8e-86 321.6 368 54.6
Eucgr.D00236 Eucalyptus grandis HOM05D003039 ORTHO05D008410 9.5e-81 304.3 368 46.5
CSS0042843 Camellia sinensis var. sinensis HOM05D003039 ORTHO05D008410 2.0e-78 296.6 333 55.6
CsaV3_5G005760 Cucumis sativus L. HOM05D003039 ORTHO05D008410 4.4e-78 295.4 368 47.0
PGR083G2073 Punica granatum HOM05D003039 ORTHO05D008410 1.7e-77 293.5 369 46.3
MELO3C005377.2 Cucumis melo HOM05D003039 ORTHO05D008410 2.2e-77 293.1 368 46.7
Hma1.2p1_0178F.1_g078560 Hydrangea macrophylla HOM05D003039 ORTHO05D008410 2.4e-71 273.1 357 45.4
CSS0033889 Camellia sinensis var. sinensis HOM05D003039 ORTHO05D008410 3.8e-69 265.8 352 48.9
Rhsim02G0205300 Rhododendron simsii HOM05D003039 ORTHO05D008410 2.4e-68 263.1 368 44.8
Gorai.013G134200 Gossypium raimondii HOM05D003039 ORTHO05D008410 2.7e-67 259.6 366 42.6
Gohir.D13G119800 Gossypium hirsutum HOM05D003039 ORTHO05D008410 3.5e-67 259.2 366 42.9
Gohir.A13G116700 Gossypium hirsutum HOM05D003039 ORTHO05D008410 3.0e-66 256.1 366 43.2
EL10Ac5g11611 Beta vulgaris HOM05D003039 ORTHO05D008410 2.5e-65 253.1 369 43.4
Cfa006303 Carpinus fangiana HOM05D003039 ORTHO05D008410 9.6e-65 251.1 368 43.8
AUR62038751 Chenopodium quinoa HOM05D003039 ORTHO05D008410 9.6e-65 251.1 372 42.2
MBI14_g08138_MAGBIO Magnolia biondii HOM05D003039 ORTHO05D008410 4.8e-64 248.8 369 42.0
Haze_04486 Corylus avellana HOM05D003039 ORTHO05D008410 6.2e-64 248.4 368 42.7
RcHm_v2.0_Chr1g0329261 Rosa chinensis HOM05D003039 ORTHO05D008410 2.0e-62 243.4 366 42.3
BolC8t51204H Brassica oleracea HOM05D003039 ORTHO05D008410 3.4e-62 242.7 365 41.1
Duzib235G1487 Durio zibethinus HOM05D003039 ORTHO05D008410 3.4e-62 242.7 367 39.5
BcaC07g40632 Brassica carinata HOM05D003039 ORTHO05D008410 9.9e-62 241.1 355 41.4
C08p36220 Brassica napus HOM05D003039 ORTHO05D008410 2.9e-61 239.6 365 40.8
QL07p027161 Quercus lobata HOM05D003039 ORTHO05D008410 4.2e-60 235.7 368 40.5
Psat3g196640 Pisum sativum HOM05D003039 ORTHO05D008410 2.7e-59 233.0 368 41.0
Dinv21315 Davidia involucrata HOM05D003039 ORTHO05D008410 2.5e-57 226.5 218 57.8
Thecc.06G053600 Theobroma cacao HOM05D003039 ORTHO05D008410 7.3e-57 224.9 367 39.0
GSVIVG01012782001 Vitis vinifera HOM05D003039 ORTHO05D008410 1.5e-54 217.2 368 39.1
AL5G43620 Arabidopsis lyrata HOM05D003039 ORTHO05D008410 9.9e-54 214.5 316 40.8
AT3G61360 Arabidopsis thaliana HOM05D003039 ORTHO05D008410 1.7e-53 213.8 365 38.4
BraA09t40767Z Brassica rapa HOM05D003039 ORTHO05D008410 2.9e-53 213.0 365 37.8
SGA_v2.0_scaffold48G17965 Striga asiatica HOM05D003039 ORTHO05D008410 8.4e-53 211.5 368 40.2
TWI09G0319 Tripterygium wilfordii HOM05D003039 ORTHO05D008410 1.9e-52 210.3 368 37.0
Atru.chr4.952 Acer truncatum HOM05D003039 ORTHO05D008410 7.9e-51 204.9 368 38.3
CDE07G0739 Ceratophyllum demersum HOM05D003039 ORTHO05D008410 1.8e-50 203.8 365 35.9
Ah.11g043940 Amaranthus hybridus HOM05D003039 ORTHO05D008410 6.7e-50 201.8 368 35.9
ClCG01G005530 Citrullus lanatus HOM05D003039 ORTHO05D008410 6.7e-50 201.8 368 37.8
MD11G1035500 Malus domestica HOM05D003039 ORTHO05D008410 1.5e-49 200.7 368 38.0
Hma1.2p1_0178F.1_g078570 Hydrangea macrophylla HOM05D003039 ORTHO05D008410 1.6e-48 197.2 329 38.9
CANSAT78G1923 Cannabis sativa HOM05D003039 ORTHO05D008410 2.1e-48 196.8 368 37.5
Migut.C01014 Erythranthe guttata HOM05D003039 ORTHO05D008410 4.8e-48 195.7 368 38.9
MD03G1030500 Malus domestica HOM05D003039 ORTHO05D008410 4.8e-48 195.7 378 37.3
COL.COLO4_07473 Corchorus olitorius HOM05D003039 ORTHO05D008410 1.1e-47 194.5 368 34.8
Prupe.2G028200 Prunus persica HOM05D003039 ORTHO05D008410 1.1e-47 194.5 368 38.0
Sabra01G0100800 Salix brachista HOM05D003039 ORTHO05D008410 2.4e-47 193.4 368 36.7
Potri.001G130400 Populus trichocarpa HOM05D003039 ORTHO05D008410 4.0e-47 192.6 368 36.1
Glyma.19G010600 Glycine max HOM05D003039 ORTHO05D008410 9.0e-47 191.4 378 36.0
HanXRQChr03g0080361 Helianthus annuus HOM05D003039 ORTHO05D008410 4.2e-44 182.6 219 46.1
Actinidia13220 Actinidia chinensis HOM05D003039 ORTHO05D008410 8.7e-42 174.9 195 52.8
unitig_26.g10218 Utricularia gibba HOM05D003039 ORTHO05D008410 8.7e-42 174.9 221 46.2
Cpa.g.sc33.110 Carica papaya HOM05D003039 ORTHO05D008410 2.5e-41 173.3 187 52.9
Manes.03G196200 Manihot esculenta HOM05D003039 ORTHO05D008410 4.3e-41 172.6 369 33.9
Solyc04g071280.3 Solanum lycopersicum HOM05D003039 ORTHO05D008410 2.1e-40 170.2 187 51.3
Sopen04g027230 Solanum pennellii HOM05D003039 ORTHO05D008410 2.1e-40 170.2 187 51.3
PGSC0003DMG400008615 Solanum tuberosum HOM05D003039 ORTHO05D008410 2.1e-40 170.2 187 51.3
arahy.Tifrunner.gnm1.ann1.J1JT5X Arachis hypogaea HOM05D003039 ORTHO05D008410 2.8e-40 169.9 212 47.2
Lsat_1_v5_gn_9_88941 Lactuca sativa HOM05D003039 ORTHO05D008410 4.8e-40 169.1 228 43.4
Sc07g0006310 Simmondsia chinensis HOM05D003039 ORTHO05D008410 1.4e-39 167.5 189 50.8
Aqoxy7G02983 Aquilegia oxysepala HOM05D003039 ORTHO05D008410 3.1e-39 166.4 340 34.4
CAN.G175.21 Capsicum annuum HOM05D003039 ORTHO05D008410 9.0e-39 164.9 187 50.8
Peaxi162Scf00765g00014 Petunia axillaris HOM05D003039 ORTHO05D008410 1.3e-37 161.0 368 32.6
Nitab4.5_0010112g0050 Nicotiana tabacum HOM05D003039 ORTHO05D008410 2.9e-37 159.8 184 50.0
Nitab4.5_0000201g0210 Nicotiana tabacum HOM05D003039 ORTHO05D008410 5.0e-37 159.1 184 49.5
DCAR_013250 Daucus carota HOM05D003039 ORTHO05D008410 8.4e-37 158.3 186 48.9
Phvul.004G017900 Phaseolus vulgaris HOM05D003039 ORTHO05D008410 1.1e-36 157.9 368 32.6
A09p53410 Brassica napus HOM05D003039 ORTHO05D008410 2.7e-35 153.3 365 31.2
Os06g0694600 Oryza sativa ssp. japonica HOM05D003039 ORTHO05D008410 6.7e-34 148.7 313 32.9
TPR.G4337 Trifolium pratense HOM05D003039 ORTHO05D008410 3.3e-33 146.4 369 32.0
Sed0027709 Sechium edule HOM05D003039 ORTHO05D008410 7.4e-33 145.2 185 45.4
Carub.0005s2803 Capsella rubella HOM05D003039 ORTHO05D008410 2.2e-32 143.7 370 31.9
Ca_04108_v3 Cicer arietinum L. HOM05D003039 ORTHO05D008410 4.8e-32 142.5 368 30.7
Ca_04117_v3 Cicer arietinum L. HOM05D003039 ORTHO05D008410 4.8e-32 142.5 368 30.7
Lalb_Chr10g0093391 Lupinus albus HOM05D003039 ORTHO05D008410 2.4e-31 140.2 369 30.6
ECA240G2382 Erigeron canadensis HOM05D003039 ORTHO05D008410 1.2e-30 137.9 186 42.5
Lj1g0018465 Lotus japonicus HOM05D003039 ORTHO05D008410 4.5e-30 136.0 372 30.4
VMungo1383G1437 Vigna mungo HOM05D003039 ORTHO05D008410 2.2e-29 133.7 186 42.5
Dinv06600 Davidia involucrata HOM05D003039 ORTHO05D008410 3.8e-29 132.9 145 52.4
CiPaw.16G103800 Carya illinoinensis HOM05D003039 ORTHO05D008410 3.2e-28 129.8 369 30.1
VMungo0016G0002 Vigna mungo HOM05D003039 ORTHO05D008410 5.5e-28 129.0 250 36.8
Nn2g12485 Nelumbo nucifera HOM05D003039 ORTHO05D008410 7.2e-28 128.6 372 29.8
FAN10G1410 Fragaria x ananassa HOM05D003039 ORTHO05D008410 2.7e-27 126.7 368 29.3
FvH4_7g04300 Fragaria vesca HOM05D003039 ORTHO05D008410 7.9e-27 125.2 370 29.7
FAN06G2480 Fragaria x ananassa HOM05D003039 ORTHO05D008410 7.9e-27 125.2 370 29.7
TAR633G0061 Trochodendron aralioides HOM05D003039 ORTHO05D008410 1.4e-26 124.4 162 45.7
CARHR171700 Cardamine hirsuta HOM05D003039 ORTHO05D008410 1.8e-26 124.0 371 28.3
CSS0016374 Camellia sinensis var. sinensis HOM05D003039 ORTHO05D008410 8.8e-26 121.7 77 80.5
TAR633G0505 Trochodendron aralioides HOM05D003039 ORTHO05D008410 8.8e-26 121.7 145 46.2
Ciclev10019823m.g Citrus clementina HOM05D003039 ORTHO05D008410 4.3e-25 119.4 373 29.5
vmacro21895 Vaccinium macrocarpon HOM05D003039 ORTHO05D008410 4.8e-24 115.9 143 47.6
Oeu046013.1 Olea europaea HOM05D003039 ORTHO05D008410 8.2e-24 115.2 114 58.8
Zm00001eb226310 Zea mays HOM05D003039 ORTHO05D008410 1.4e-23 114.4 313 29.4
Cc10_g14690 Coffea canephora HOM05D003039 ORTHO05D008410 5.0e-21 105.9 110 51.8
Aa31LG9G15670 Aethionema arabicum HOM05D003039 ORTHO05D008410 6.5e-21 105.5 371 28.0
AUR62020631 Chenopodium quinoa HOM05D000182 ORTHO05D000112 6.5e-21 105.5 152 41.4
Sc04g0003920 Simmondsia chinensis HOM05D003039 ORTHO05D008410 7.9e-19 98.6 65 66.2
PSO170G3686 Papaver somniferum HOM05D003039 ORTHO05D008410 2.3e-18 97.1 108 47.2
SalBow7G2460 Salvia bowleyana HOM05D003039 ORTHO05D008410 3.0e-18 96.7 110 50.0
ATR0580G194 Amborella trichopoda HOM05D003039 ORTHO05D008410 2.6e-17 93.6 367 27.8
Sp5g02040 Schrenkiella parvula HOM05D003039 ORTHO05D008410 7.4e-17 92.0 90 54.4
Thhalv10006474m.g Eutrema salsugineum HOM05D003039 ORTHO05D008410 2.2e-16 90.5 90 53.3
THA.LOC104812722 Tarenaya hassleriana HOM05D003039 ORTHO05D008410 2.6e-14 83.6 118 44.9
Ciclev10027356m.g Citrus clementina HOM05D003039 ORTHO05D008410 1.0e-13 81.6 116 41.4
Ciclev10024535m.g Citrus clementina HOM05D003039 ORTHO05D008410 2.1e-11 73.9 116 37.1
HPP92_010770 Vanilla planifolia HOM05D003039 ORTHO05D008410 1.3e-08 64.7 107 33.6
VMungo0464G1133 Vigna mungo HOM05D003039 ORTHO05D008410 1.8e-07 60.8 66 43.9
SEGI_15112 Sequoiadendron giganteum HOM05D003039 ORTHO05D008410 2.4e-07 60.5 106 34.9
Nn7g36379 Nelumbo nucifera HOM05D000891 ORTHO05D000761 3.1e-07 60.1 91 31.9
EL10Ac9g22193 Beta vulgaris HOM05D025815 ORTHO05D018419 3.5e-06 56.6 71 36.6
BcaB03g16638 Brassica carinata HOM05D003039 ORTHO05D008410 3.5e-06 56.6 65 40.0
BcaNung04765 Brassica carinata HOM05D007322 ORTHO05D009029 4.5e-06 56.2 124 29.8
CARHR011130 Cardamine hirsuta HOM05D007322 ORTHO05D009029 4.5e-06 56.2 87 32.2
Oeu032980.1 Olea europaea HOM05D003039 ORTHO05D008410 4.5e-06 56.2 41 68.3
AL1G21890 Arabidopsis lyrata HOM05D007322 ORTHO05D009029 5.9e-06 55.8 87 33.3
AT1G10910 Arabidopsis thaliana HOM05D007322 ORTHO05D009029 5.9e-06 55.8 87 32.2


User provided reference genes

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