Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038647 Camellia sinensis var. sinensis HOM05D006439 ORTHO05D008152 5.0e-193 677.6 334 100.0
Rhsim04G0133900 Rhododendron simsii HOM05D006439 ORTHO05D008152 2.3e-129 466.1 281 80.8
GSVIVG01033817001 Vitis vinifera HOM05D006439 ORTHO05D008152 7.2e-123 444.5 291 73.2
MD12G1021400 Malus domestica HOM05D006439 ORTHO05D008152 1.1e-115 420.6 291 70.4
Thecc.05G084500 Theobroma cacao HOM05D006439 ORTHO05D008152 1.1e-115 420.6 284 70.4
Hma1.2p1_0232F.1_g097640 Hydrangea macrophylla HOM05D006439 ORTHO05D008152 2.7e-114 416.0 292 68.5
Gorai.007G371000 Gossypium raimondii HOM05D006439 ORTHO05D008152 3.9e-113 412.1 284 70.1
Gohir.D11G340900 Gossypium hirsutum HOM05D006439 ORTHO05D008152 5.1e-113 411.8 284 70.1
Prupe.7G115000 Prunus persica HOM05D006439 ORTHO05D008152 2.6e-112 409.5 283 69.6
RcHm_v2.0_Chr3g0472491 Rosa chinensis HOM05D006439 ORTHO05D008152 7.4e-112 407.9 290 67.9
FAN02G3052 Fragaria x ananassa HOM05D006439 ORTHO05D008152 2.2e-111 406.4 290 69.0
CiPaw.09G010200 Carya illinoinensis HOM05D006439 ORTHO05D008152 2.8e-111 406.0 285 68.4
Cfa016567 Carpinus fangiana HOM05D006439 ORTHO05D008152 3.7e-111 405.6 291 68.7
FvH4_6g18170 Fragaria vesca HOM05D006439 ORTHO05D008152 8.2e-111 404.4 290 68.3
Gohir.A11G321900 Gossypium hirsutum HOM05D006439 ORTHO05D008152 1.1e-110 404.1 282 69.5
Manes.08G022900 Manihot esculenta HOM05D006439 ORTHO05D008152 1.1e-110 404.1 284 68.3
QL07p039851 Quercus lobata HOM05D006439 ORTHO05D008152 7.0e-110 401.4 283 69.6
Atru.chr8.1601 Acer truncatum HOM05D006439 ORTHO05D008152 2.5e-107 392.9 291 66.0
HanXRQChr09g0247281 Helianthus annuus HOM05D006439 ORTHO05D008152 2.7e-106 389.4 281 65.1
Cc06_g05440 Coffea canephora HOM05D006439 ORTHO05D008152 1.4e-105 387.1 292 64.7
TWI74G0883 Tripterygium wilfordii HOM05D006439 ORTHO05D008152 1.8e-105 386.7 295 64.1
Oeu034357.1 Olea europaea HOM05D006439 ORTHO05D008152 5.2e-105 385.2 282 65.2
Cpa.g.sc5.59 Carica papaya HOM05D006439 ORTHO05D008152 1.1e-104 384.0 320 61.2
Dinv21235 Davidia involucrata HOM05D000103 ORTHO05D008152 1.5e-104 383.6 291 67.4
Haze_19565 Corylus avellana HOM05D006439 ORTHO05D008152 2.8e-103 379.4 291 66.0
Ca_08981_v3 Cicer arietinum L. HOM05D006439 ORTHO05D008152 6.3e-103 378.3 290 63.1
Glyma.03G192900 Glycine max HOM05D006439 ORTHO05D008152 1.4e-102 377.1 290 62.8
Lj1g0012097 Lotus japonicus HOM05D006439 ORTHO05D008152 5.3e-102 375.2 284 62.7
Lalb_Chr01g0018261 Lupinus albus HOM05D006439 ORTHO05D008152 1.2e-101 374.0 290 63.8
Sc07g0005420 Simmondsia chinensis HOM05D006439 ORTHO05D008152 2.7e-101 372.9 290 61.7
TPR.G19544 Trifolium pratense HOM05D006439 ORTHO05D008152 4.5e-101 372.1 290 63.1
Migut.L01768 Erythranthe guttata HOM05D006439 ORTHO05D008152 1.7e-100 370.2 281 62.6
Psat3g034720 Pisum sativum HOM05D006439 ORTHO05D008152 1.7e-100 370.2 282 62.8
ECA233G3232 Erigeron canadensis HOM05D006439 ORTHO05D008152 2.9e-100 369.4 282 63.1
Lsat_1_v5_gn_6_69500 Lactuca sativa HOM05D006439 ORTHO05D008152 5.0e-100 368.6 283 63.6
Phvul.001G188000 Phaseolus vulgaris HOM05D006439 ORTHO05D008152 2.1e-98 363.2 294 60.5
arahy.Tifrunner.gnm1.ann1.JQB9X3 Arachis hypogaea HOM05D006439 ORTHO05D008152 3.6e-98 362.5 304 59.9
Medtr7g104170 Medicago truncatula HOM05D006439 ORTHO05D008152 5.2e-97 358.6 290 61.0
THA.LOC104823488 Tarenaya hassleriana HOM05D006439 ORTHO05D008152 8.8e-97 357.8 290 59.7
Sopen10g035010 Solanum pennellii HOM05D006439 ORTHO05D008152 2.0e-96 356.7 282 60.6
FAN14G3294 Fragaria x ananassa HOM05D006439 ORTHO05D008152 3.4e-96 355.9 311 59.2
VMungo1383G0775 Vigna mungo HOM05D006439 ORTHO05D008152 4.4e-96 355.5 294 60.5
Aqoxy2G01352 Aquilegia oxysepala HOM05D006439 ORTHO05D008152 7.5e-96 354.8 283 61.5
Solyc10g085600.2 Solanum lycopersicum HOM05D006439 ORTHO05D008152 1.7e-95 353.6 282 60.6
Thhalv10017885m.g Eutrema salsugineum HOM05D006439 ORTHO05D008152 2.8e-95 352.8 283 61.1
SalBow5G0766 Salvia bowleyana HOM05D006439 ORTHO05D008152 4.8e-95 352.1 291 58.8
arahy.Tifrunner.gnm1.ann1.YQ8CLY Arachis hypogaea HOM05D006439 ORTHO05D008152 4.1e-94 349.0 314 57.3
AL4G32530 Arabidopsis lyrata HOM05D006439 ORTHO05D008152 5.4e-94 348.6 286 59.8
Nn2g14057 Nelumbo nucifera HOM05D006439 ORTHO05D008152 5.4e-94 348.6 284 61.3
Carub.0004s1817 Capsella rubella HOM05D006439 ORTHO05D008152 9.1e-94 347.8 283 60.8
EL10Ac7g16960 Beta vulgaris HOM05D006439 ORTHO05D008152 4.5e-93 345.5 301 56.8
Aa31LG5G21550 Aethionema arabicum HOM05D006439 ORTHO05D008152 7.7e-93 344.7 283 59.4
Sp4g18660 Schrenkiella parvula HOM05D006439 ORTHO05D008152 1.0e-92 344.4 283 59.4
BolC4t28018H Brassica oleracea HOM05D006439 ORTHO05D008152 1.3e-92 344.0 283 59.0
PGR142G3529 Punica granatum HOM05D006439 ORTHO05D008152 3.8e-92 342.4 282 59.2
PSO384G3820 Papaver somniferum HOM05D006439 ORTHO05D008152 5.0e-92 342.0 283 60.8
TAR623G1631 Trochodendron aralioides HOM05D006439 ORTHO05D008152 5.0e-92 342.0 286 62.6
AT2G36370 Arabidopsis thaliana HOM05D006439 ORTHO05D008152 8.5e-92 341.3 283 59.0
A04p27880 Brassica napus HOM05D006439 ORTHO05D008152 1.2e-90 337.4 283 58.0
BraA04t18280Z Brassica rapa HOM05D006439 ORTHO05D008152 2.7e-90 336.3 281 57.3
Actinidia31281 Actinidia chinensis HOM05D006439 ORTHO05D008152 4.7e-90 335.5 209 79.9
BcaC02g07604 Brassica carinata HOM05D006439 ORTHO05D008152 1.8e-89 333.6 283 57.2
MBI17_g23163_MAGBIO Magnolia biondii HOM05D006439 ORTHO05D008152 3.0e-89 332.8 286 59.8
CARHR130670 Cardamine hirsuta HOM05D006439 ORTHO05D008152 5.2e-89 332.0 282 58.2
SGA_v2.0_scaffold184G39949 Striga asiatica HOM05D006439 ORTHO05D008152 4.9e-87 325.5 322 51.2
BcaB06g28933 Brassica carinata HOM05D006439 ORTHO05D008152 5.4e-86 322.0 315 52.1
vmacro08831 Vaccinium macrocarpon HOM05D006439 ORTHO05D008152 4.5e-85 318.9 198 77.8
Peaxi162Scf00146g00718 Petunia axillaris HOM05D006439 ORTHO05D008152 2.2e-79 300.1 283 54.1
HPP92_005462 Vanilla planifolia HOM05D006439 ORTHO05D008152 1.8e-78 297.0 290 53.8
Duzib093G0471 Durio zibethinus HOM05D006439 ORTHO05D008152 3.0e-76 289.7 284 51.8
Ah.15g091040 Amaranthus hybridus HOM05D006439 ORTHO05D008152 1.5e-75 287.3 283 52.3
AUR62028585 Chenopodium quinoa HOM05D006439 ORTHO05D008152 1.6e-74 283.9 246 55.7
Lj3A1001T30 Lonicera japonica HOM05D006439 ORTHO05D008152 3.1e-73 279.6 228 63.2
Os01g0968600 Oryza sativa ssp. japonica HOM05D006439 ORTHO05D008152 3.7e-71 272.7 288 46.5
CAN.G1099.9 Capsicum annuum HOM05D006439 ORTHO05D008152 6.0e-61 238.8 200 61.0
Nitab4.5_0000381g0240 Nicotiana tabacum HOM05D006439 ORTHO05D008152 1.3e-60 237.7 198 60.1
QL07p039868 Quercus lobata HOM05D006439 ORTHO05D008152 3.9e-60 236.1 197 63.5
PSO801G0048 Papaver somniferum HOM05D006439 ORTHO05D008152 2.6e-56 223.4 284 44.0
SEGI_26522 Sequoiadendron giganteum HOM05D006439 ORTHO05D000001 4.9e-47 192.6 220 46.4
Zm00001eb139990 Zea mays HOM05D006439 ORTHO05D008152 2.4e-46 190.3 220 48.2
DCAR_009146 Daucus carota HOM05D006439 ORTHO05D008152 2.1e-45 187.2 281 38.4
Ciclev10013912m.g Citrus clementina HOM05D006439 ORTHO05D008152 5.1e-44 182.6 121 72.7
PGSC0003DMG402008399 Solanum tuberosum HOM05D006439 ORTHO05D008152 6.9e-41 172.2 113 67.3
SMO238G0046 Selaginella moellendorffii HOM05D006439 ORTHO05D008152 6.0e-37 159.1 283 35.7
AagrBONN_evm.TU.Sc2ySwM_117.1948 Anthoceros agrestis HOM05D006439 ORTHO05D008152 6.9e-33 145.6 289 32.9
Ciclev10011131m.g Citrus clementina HOM05D006439 ORTHO05D008152 9.0e-33 145.2 119 61.3
Pp3c16_1040 Physcomitrium patens HOM05D006439 ORTHO05D008152 4.5e-32 142.9 282 33.7
Mapoly0116s0006 Marchantia polymorpha HOM05D006439 ORTHO05D008152 2.2e-31 140.6 314 30.3
Thecc.10G111400 Theobroma cacao HOM05D006439 ORTHO05D008152 5.3e-25 119.4 77 71.4
CAN.G1099.8 Capsicum annuum HOM05D006439 ORTHO05D008152 3.9e-20 103.2 70 62.9
Nitab4.5_0000381g0270 Nicotiana tabacum HOM05D006502 ORTHO05D007704 3.3e-19 100.1 65 64.6
SEGI_37059 Sequoiadendron giganteum HOM05D006439 ORTHO05D008152 5.9e-16 89.4 73 56.2
ECA232G2349 Erigeron canadensis HOM05D006439 ORTHO05D008321 1.5e-11 74.7 65 53.8
FAN09G3024 Fragaria x ananassa HOM05D006439 ORTHO05D008152 1.9e-11 74.3 108 39.8
Lj3A1001T31 Lonicera japonica HOM05D006439 ORTHO05D008152 1.2e-08 65.1 38 73.7
AUR62033535 Chenopodium quinoa HOM05D006439 ORTHO05D008152 1.3e-07 61.6 38 65.8
AUR62028586 Chenopodium quinoa HOM05D006439 ORTHO05D008152 1.7e-07 61.2 38 68.4


User provided reference genes

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