Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038547 Camellia sinensis var. sinensis HOM05D000010 ORTHO05D000302 4.8e-109 397.9 207 100.0
Dinv20205 Davidia involucrata HOM05D000010 ORTHO05D000302 8.5e-58 227.6 215 62.3
Dinv14939 Davidia involucrata HOM05D000010 ORTHO05D000302 2.8e-48 196.1 184 62.5
Haze_09408 Corylus avellana HOM05D000010 ORTHO05D000302 2.3e-47 193.0 221 53.8
Actinidia18776 Actinidia chinensis HOM05D000010 ORTHO05D000302 4.0e-47 192.2 209 59.3
CiPaw.12G117100 Carya illinoinensis HOM05D000010 ORTHO05D000302 7.0e-44 181.4 221 53.4
Rhsim06G0202800 Rhododendron simsii HOM05D000010 ORTHO05D000302 1.6e-43 180.3 220 55.9
Hma1.2p1_1034F.1_g250400 Hydrangea macrophylla HOM05D000010 ORTHO05D000302 1.7e-42 176.8 205 55.1
CiPaw.11G167600 Carya illinoinensis HOM05D000010 ORTHO05D000302 1.2e-40 170.6 227 49.8
CsaV3_4G033430 Cucumis sativus L. HOM05D000010 ORTHO05D000302 1.2e-40 170.6 221 53.8
GSVIVG01014287001 Vitis vinifera HOM05D000010 ORTHO05D000302 4.0e-39 165.6 209 55.0
Cc05_g11720 Coffea canephora HOM05D000010 ORTHO05D000302 8.9e-39 164.5 219 52.1
MELO3C025611.2 Cucumis melo HOM05D000010 ORTHO05D000302 1.7e-37 160.2 222 51.8
Nn1g04206 Nelumbo nucifera HOM05D000010 ORTHO05D000302 6.4e-37 158.3 218 50.5
TAR627G0697 Trochodendron aralioides HOM05D000010 ORTHO05D000302 8.3e-37 157.9 211 50.7
ClCG11G017790 Citrullus lanatus HOM05D000010 ORTHO05D000302 2.4e-36 156.4 228 50.0
Nn1g06441 Nelumbo nucifera HOM05D000010 ORTHO05D000302 3.2e-36 156.0 213 49.8
Potri.011G115400 Populus trichocarpa HOM05D000010 ORTHO05D000302 3.2e-36 156.0 218 50.9
vmacro23191 Vaccinium macrocarpon HOM05D000010 ORTHO05D000302 4.1e-36 155.6 221 54.8
Sed0010922 Sechium edule HOM05D000010 ORTHO05D000302 2.0e-35 153.3 223 49.8
Oeu051089.1 Olea europaea HOM05D000010 ORTHO05D000302 2.7e-35 152.9 211 50.2
Sabra11G0101100 Salix brachista HOM05D000010 ORTHO05D000302 3.5e-35 152.5 208 54.3
TAR629G0724 Trochodendron aralioides HOM05D000010 ORTHO05D000302 2.3e-34 149.8 208 48.1
QL08p023902 Quercus lobata HOM05D000010 ORTHO05D000302 6.6e-34 148.3 228 48.7
TWI38G1761 Tripterygium wilfordii HOM05D000010 ORTHO05D000302 6.6e-34 148.3 220 46.8
VMungo1080G1217 Vigna mungo HOM05D000010 ORTHO05D000302 6.6e-34 148.3 213 50.7
Thecc.07G097000 Theobroma cacao HOM05D000010 ORTHO05D000302 8.6e-34 147.9 225 46.7
MD11G1253500 Malus domestica HOM05D000010 ORTHO05D000302 3.3e-33 146.0 214 50.0
TAR626G1367 Trochodendron aralioides HOM05D000010 ORTHO05D000302 4.3e-33 145.6 214 48.6
Gohir.D11G298800 Gossypium hirsutum HOM05D000010 ORTHO05D000302 9.5e-33 144.4 215 47.0
Lalb_Chr01g0006621 Lupinus albus HOM05D000010 ORTHO05D000302 9.5e-33 144.4 216 49.5
Prupe.4G175800 Prunus persica HOM05D000010 ORTHO05D000302 9.5e-33 144.4 225 49.3
Phvul.005G074500 Phaseolus vulgaris HOM05D000010 ORTHO05D000302 1.6e-32 143.7 215 49.8
Gohir.A11G286000 Gossypium hirsutum HOM05D000010 ORTHO05D000302 2.1e-32 143.3 215 46.5
Eucgr.F01170 Eucalyptus grandis HOM05D000010 ORTHO05D000302 2.8e-32 142.9 218 47.7
Aqoxy4G00690 Aquilegia oxysepala HOM05D000010 ORTHO05D000302 6.2e-32 141.7 220 46.4
Gorai.007G323900 Gossypium raimondii HOM05D000010 ORTHO05D000302 6.2e-32 141.7 215 46.0
Lsat_1_v5_gn_7_104460 Lactuca sativa HOM05D000010 ORTHO05D000302 6.2e-32 141.7 212 46.7
Nitab4.5_0002019g0060 Nicotiana tabacum HOM05D000010 ORTHO05D000302 8.0e-32 141.4 206 46.1
Duzib213G0879 Durio zibethinus HOM05D000010 ORTHO05D000302 1.1e-31 141.0 221 44.8
DCAR_013122 Daucus carota HOM05D000010 ORTHO05D000302 1.4e-31 140.6 213 45.5
Lalb_Chr19g0134051 Lupinus albus HOM05D000010 ORTHO05D000302 1.4e-31 140.6 215 46.5
Phvul.011G160400 Phaseolus vulgaris HOM05D000010 ORTHO05D000302 1.8e-31 140.2 225 45.8
Lalb_Chr07g0182901 Lupinus albus HOM05D019418 ORTHO05D000302 2.3e-31 139.8 216 45.8
Duzib268G1713 Durio zibethinus HOM05D000010 ORTHO05D000302 3.1e-31 139.4 216 45.4
MBI07_g32659_MAGBIO Magnolia biondii HOM05D000010 ORTHO05D000302 5.2e-31 138.7 218 47.2
Lsat_1_v5_gn_5_127660 Lactuca sativa HOM05D000010 ORTHO05D000302 6.8e-31 138.3 217 47.5
Migut.M00779 Erythranthe guttata HOM05D000010 ORTHO05D000302 8.9e-31 137.9 219 47.5
Glyma.12G226500 Glycine max HOM05D000010 ORTHO05D000302 8.9e-31 137.9 222 47.3
Gohir.A01G061200 Gossypium hirsutum HOM05D000010 ORTHO05D000302 2.0e-30 136.7 212 45.3
SGA_v2.0_scaffold73G24232 Striga asiatica HOM05D000010 ORTHO05D000302 3.4e-30 136.0 219 45.7
Lalb_Chr03g0030781 Lupinus albus HOM05D000010 ORTHO05D000302 4.4e-30 135.6 220 47.3
SalBow8G2195 Salvia bowleyana HOM05D000010 ORTHO05D000302 5.8e-30 135.2 206 45.6
Gohir.D01G047700 Gossypium hirsutum HOM05D000010 ORTHO05D000302 1.3e-29 134.0 218 44.5
PGSC0003DMG400012403 Solanum tuberosum HOM05D000010 ORTHO05D000302 1.3e-29 134.0 217 41.9
Glyma.13G274300 Glycine max HOM05D000010 ORTHO05D000302 1.7e-29 133.7 219 48.4
Sc03g0010210 Simmondsia chinensis HOM05D000010 ORTHO05D000302 2.9e-29 132.9 213 48.4
Manes.03G105700 Manihot esculenta HOM05D000010 ORTHO05D000302 3.7e-29 132.5 213 44.1
COL.COLO4_18017 Corchorus olitorius HOM05D000010 ORTHO05D000302 4.9e-29 132.1 223 48.0
Gorai.002G067300 Gossypium raimondii HOM05D000010 ORTHO05D000302 4.9e-29 132.1 217 43.3
Manes.15G089700 Manihot esculenta HOM05D000010 ORTHO05D000302 4.9e-29 132.1 214 46.3
Medtr2g078700 Medicago truncatula HOM05D000010 ORTHO05D000302 1.4e-28 130.6 228 44.3
CANSAT35G0864 Cannabis sativa HOM05D000010 ORTHO05D000302 2.4e-28 129.8 230 43.5
Sopen07g031040 Solanum pennellii HOM05D000010 ORTHO05D000302 2.4e-28 129.8 216 42.1
Duzib170G0951 Durio zibethinus HOM05D000010 ORTHO05D000302 3.2e-28 129.4 216 46.3
Lj3g0022117 Lotus japonicus HOM05D000010 ORTHO05D000302 3.2e-28 129.4 223 44.8
HanXRQChr03g0070611 Helianthus annuus HOM05D000010 ORTHO05D000302 4.1e-28 129.0 211 44.1
ECA234G1102 Erigeron canadensis HOM05D000010 ORTHO05D000302 5.4e-28 128.6 221 46.6
Sed0010071 Sechium edule HOM05D000010 ORTHO05D000302 5.4e-28 128.6 220 44.5
Solyc07g062840.3 Solanum lycopersicum HOM05D000010 ORTHO05D000302 9.2e-28 127.9 216 42.1
MBI06_g06469_MAGBIO Magnolia biondii HOM05D000658 ORTHO05D000826 1.6e-27 127.1 182 45.6
Lj1C839T8 Lonicera japonica HOM05D000010 ORTHO05D000302 4.6e-27 125.6 213 45.1
TWI39G0113 Tripterygium wilfordii HOM05D000010 ORTHO05D000302 6.0e-27 125.2 219 44.3
Atru.chr2.2406 Acer truncatum HOM05D000010 ORTHO05D000302 1.3e-26 124.0 234 44.0
vmacro09522 Vaccinium macrocarpon HOM05D000010 ORTHO05D000302 1.7e-26 123.6 212 43.9
Gohir.A13G147100 Gossypium hirsutum HOM05D000010 ORTHO05D000302 2.3e-26 123.2 217 44.7
Nitab4.5_0002330g0090 Nicotiana tabacum HOM05D000010 ORTHO05D000302 2.3e-26 123.2 187 46.5
Psat0s5198g0040 Pisum sativum HOM05D000010 ORTHO05D000302 2.3e-26 123.2 229 42.4
Gorai.013G171300 Gossypium raimondii HOM05D000010 ORTHO05D000302 5.1e-26 122.1 217 44.7
VMungo1127G1061 Vigna mungo HOM05D000010 ORTHO05D000302 5.1e-26 122.1 225 42.2
Lj1A838T32 Lonicera japonica HOM05D000010 ORTHO05D000302 8.6e-26 121.3 213 45.1
Gohir.D13G152134 Gossypium hirsutum HOM05D000010 ORTHO05D000302 1.9e-25 120.2 217 44.2
Sc16g0007190 Simmondsia chinensis HOM05D000010 ORTHO05D000302 7.3e-25 118.2 187 44.4
Peaxi162Scf00069g01832 Petunia axillaris HOM05D000010 ORTHO05D000302 2.8e-24 116.3 207 44.0
Psat0s2051g0040 Pisum sativum HOM05D000010 ORTHO05D000302 2.8e-24 116.3 229 42.8
RcHm_v2.0_Chr5g0032661 Rosa chinensis HOM05D000010 ORTHO05D000302 2.8e-24 116.3 222 42.3
Cpa.g.sc131.88 Carica papaya HOM05D000010 ORTHO05D000302 1.1e-23 114.4 221 40.7
TWI38G0587 Tripterygium wilfordii HOM05D000010 ORTHO05D000302 1.4e-23 114.0 218 40.8
TPR.G7951 Trifolium pratense HOM05D019418 ORTHO05D000302 5.2e-23 112.1 227 43.6
CAN.G162.35 Capsicum annuum HOM05D000010 ORTHO05D000302 8.9e-23 111.3 208 41.3
ECA236G2500 Erigeron canadensis HOM05D000010 ORTHO05D000302 8.9e-23 111.3 225 38.7
Potri.001G396300 Populus trichocarpa HOM05D000010 ORTHO05D000302 3.4e-22 109.4 180 46.7
Sabra16G0259500 Salix brachista HOM05D000010 ORTHO05D000302 7.5e-22 108.2 170 54.7
FvH4_3g19410 Fragaria vesca HOM05D000010 ORTHO05D000302 2.9e-21 106.3 214 37.9
FAN11G0934 Fragaria x ananassa HOM05D000010 ORTHO05D000302 6.4e-21 105.1 214 37.4
FAN25G2268 Fragaria x ananassa HOM05D000010 ORTHO05D000302 6.4e-21 105.1 214 37.9
Hund22826 Selenicereus undatus HOM05D000010 ORTHO05D000302 1.4e-20 104.0 214 42.5
FAN21G2186 Fragaria x ananassa HOM05D000010 ORTHO05D000302 1.9e-20 103.6 214 37.9
Ciclev10008619m.g Citrus clementina HOM05D000010 ORTHO05D000302 4.1e-20 102.4 230 41.7
SalBow7G4298 Salvia bowleyana HOM05D000010 ORTHO05D000302 7.1e-20 101.7 205 39.0
FAN05G0894 Fragaria x ananassa HOM05D000010 ORTHO05D000302 1.0e-18 97.8 186 43.5
FAN16G2019 Fragaria x ananassa HOM05D000010 ORTHO05D000302 1.0e-18 97.8 215 38.1
Glyma.12G161700 Glycine max HOM05D000010 ORTHO05D000302 1.7e-18 97.1 230 38.7
Peaxi162Scf00027g00145 Petunia axillaris HOM05D000010 ORTHO05D000302 1.7e-18 97.1 190 42.1
THA.LOC104811874 Tarenaya hassleriana HOM05D000010 ORTHO05D000302 6.6e-18 95.1 226 38.5
unitig_0.g2042 Utricularia gibba HOM05D000010 ORTHO05D000302 6.6e-18 95.1 215 37.7
unitig_747.g21577 Utricularia gibba HOM05D000010 ORTHO05D000302 6.6e-18 95.1 212 38.7
FvH4_6g06070 Fragaria vesca HOM05D000010 ORTHO05D000302 8.6e-18 94.7 184 42.9
Glyma.06G236000 Glycine max HOM05D000010 ORTHO05D000302 1.9e-17 93.6 234 35.5
AUR62019477 Chenopodium quinoa HOM05D000010 ORTHO05D000302 1.2e-16 90.9 251 35.5
Lj3g0019574 Lotus japonicus HOM05D000010 ORTHO05D000302 2.1e-16 90.1 233 36.9
FAN02G4122 Fragaria x ananassa HOM05D000010 ORTHO05D000302 1.8e-15 87.0 184 40.8
Atru.chr2.2405 Acer truncatum HOM05D000010 ORTHO05D000302 1.5e-14 84.0 197 42.1
ATR0730G026 Amborella trichopoda HOM05D000010 ORTHO05D000302 2.0e-14 83.6 213 34.7
FAN21G0506 Fragaria x ananassa HOM05D000010 ORTHO05D000302 2.0e-14 83.6 219 36.1
AL8G29092 Arabidopsis lyrata HOM05D000010 ORTHO05D000302 5.8e-14 82.0 233 37.3
HanXRQChr10g0302591 Helianthus annuus HOM05D000010 ORTHO05D000302 5.8e-14 82.0 209 38.3
FvH4_3g03540 Fragaria vesca HOM05D000010 ORTHO05D000302 7.6e-14 81.6 223 35.4
FAN11G2656 Fragaria x ananassa HOM05D000010 ORTHO05D000302 7.6e-14 81.6 223 35.4
Aa31LG3G10010 Aethionema arabicum HOM05D000010 ORTHO05D000302 9.9e-14 81.3 216 34.7
PSO675G1353 Papaver somniferum HOM05D000010 ORTHO05D000302 6.4e-13 78.6 279 36.6
EL10Ac4g08242 Beta vulgaris HOM05D000010 ORTHO05D000302 8.4e-13 78.2 271 32.5
PSO541G6265 Papaver somniferum HOM05D000010 ORTHO05D000302 8.4e-13 78.2 279 36.2
arahy.Tifrunner.gnm1.ann1.XB6K25 Arachis hypogaea HOM05D000010 ORTHO05D000302 3.2e-12 76.3 132 38.6
arahy.Tifrunner.gnm1.ann1.B9XEKF Arachis hypogaea HOM05D000010 ORTHO05D000302 7.1e-12 75.1 132 37.9
PSO478G5307 Papaver somniferum HOM05D000010 ORTHO05D000302 7.1e-12 75.1 233 34.8
AT5G53950 Arabidopsis thaliana HOM05D000010 ORTHO05D000302 9.2e-12 74.7 238 34.5
SHI21701 Sapria himalayana HOM05D000010 ORTHO05D000302 1.6e-11 73.9 209 34.9
FvH4_3g03580 Fragaria vesca HOM05D000010 ORTHO05D000302 2.1e-11 73.6 208 35.1
Sp6g16030 Schrenkiella parvula HOM05D000010 ORTHO05D000302 4.6e-11 72.4 236 34.3
DCAR_020996 Daucus carota HOM05D000010 ORTHO05D000302 7.8e-11 71.6 204 34.8
Thhalv10013863m.g Eutrema salsugineum HOM05D000010 ORTHO05D000302 1.3e-10 70.9 228 33.8
PSO017G6648 Papaver somniferum HOM05D000010 ORTHO05D000302 1.3e-10 70.9 164 36.0
A02p10670 Brassica napus HOM05D000010 ORTHO05D000302 1.7e-10 70.5 232 33.6
BraA02t06130Z Brassica rapa HOM05D000010 ORTHO05D000302 1.7e-10 70.5 232 33.6
Ah.04g164570 Amaranthus hybridus HOM05D000010 ORTHO05D000302 3.9e-10 69.3 236 34.7
ClCG05G009250 Citrullus lanatus HOM05D000010 ORTHO05D000302 5.1e-10 68.9 185 37.8
Sed0027535 Sechium edule HOM05D000010 ORTHO05D000302 6.6e-10 68.6 187 36.9
CsaV3_3G019530 Cucumis sativus L. HOM05D000010 ORTHO05D000302 1.9e-09 67.0 185 35.1
Carub.0008s1426 Capsella rubella HOM05D000010 ORTHO05D000302 2.5e-09 66.6 233 33.0
MELO3C019401.2 Cucumis melo HOM05D000010 ORTHO05D000302 4.3e-09 65.9 185 35.7
BcaB08g35748 Brassica carinata HOM05D000010 ORTHO05D000302 5.6e-09 65.5 230 33.9
C02p17800 Brassica napus HOM05D000010 ORTHO05D000302 5.6e-09 65.5 232 31.9
BcaC03g14365 Brassica carinata HOM05D000010 ORTHO05D000302 9.6e-09 64.7 232 31.9
BcaC04g20401 Brassica carinata HOM05D000010 ORTHO05D000302 1.6e-08 63.9 229 34.5
BolC9t57283H Brassica oleracea HOM05D000010 ORTHO05D000302 1.6e-08 63.9 229 34.5
BcaB05g22094 Brassica carinata HOM05D000010 ORTHO05D000302 2.1e-08 63.5 232 33.6
BolC2t07909H Brassica oleracea HOM05D000010 ORTHO05D000302 2.1e-08 63.5 226 31.9
THA.LOC104825166 Tarenaya hassleriana HOM05D000010 ORTHO05D000302 2.1e-08 63.5 214 32.7
CARHR267090 Cardamine hirsuta HOM05D000010 ORTHO05D000302 3.6e-08 62.8 231 32.5
C09p44000 Brassica napus HOM05D000010 ORTHO05D000302 8.1e-08 61.6 227 33.5
Migut.H01960 Erythranthe guttata HOM05D000010 ORTHO05D000302 1.4e-07 60.8 210 36.7
Lalb_Chr20g0109531 Lupinus albus HOM05D000010 ORTHO05D000302 1.4e-07 60.8 216 31.5
Medtr6g059440 Medicago truncatula HOM05D019418 ORTHO05D000302 3.1e-07 59.7 98 48.0
DCAR_019571 Daucus carota HOM05D000010 ORTHO05D000302 9.9e-06 54.7 204 28.4


User provided reference genes

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