Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038532 Camellia sinensis var. sinensis HOM05D001200 ORTHO05D002731 1.0e-87 326.6 156 100.0
CSS0005564 Camellia sinensis var. sinensis HOM05D001200 ORTHO05D002731 3.1e-84 315.1 156 96.8
EL10As15g24100 Beta vulgaris HOM05D001200 ORTHO05D002731 9.7e-30 134.0 206 44.2
EL10As15g24137 Beta vulgaris HOM05D001200 ORTHO05D002731 9.7e-30 134.0 206 44.2
HanXRQChr11g0323741 Helianthus annuus HOM05D001200 ORTHO05D002731 1.3e-29 133.7 186 46.2
PGSC0003DMG401011339 Solanum tuberosum HOM05D001200 ORTHO05D002731 4.1e-28 128.6 206 43.2
Nn064s42212 Nelumbo nucifera HOM05D001200 ORTHO05D002731 9.1e-28 127.5 206 42.7
HanXRQChr00c0690g0576761 Helianthus annuus HOM05D001200 ORTHO05D002731 2.6e-27 125.9 206 41.7
HanXRQChr02g0059711 Helianthus annuus HOM05D001200 ORTHO05D002731 2.6e-27 125.9 206 41.7
HanXRQChr05g0152431 Helianthus annuus HOM05D001200 ORTHO05D002731 2.6e-27 125.9 206 41.7
HanXRQChr09g0258521 Helianthus annuus HOM05D001200 ORTHO05D002731 2.6e-27 125.9 206 41.7
HanXRQCPg0580351 Helianthus annuus HOM05D001200 ORTHO05D002731 2.6e-27 125.9 206 41.7
DCAR_032536 Daucus carota HOM05D001200 ORTHO05D002731 1.3e-26 123.6 206 42.2
Gorai.006G071400 Gossypium raimondii HOM05D001200 ORTHO05D002731 1.3e-26 123.6 91 72.5
PGSC0003DMG400020539 Solanum tuberosum HOM05D001200 ORTHO05D002731 1.3e-26 123.6 203 42.4
Medtr0002s0170 Medicago truncatula HOM05D001200 ORTHO05D002731 8.5e-26 120.9 206 40.8
BcaC03g16699 Brassica carinata HOM05D001200 ORTHO05D002731 1.4e-25 120.2 206 39.8
C09p24620 Brassica napus HOM05D001200 ORTHO05D002731 1.4e-25 120.2 206 39.8
BraSC179t45776Z Brassica rapa HOM05D001200 ORTHO05D002731 1.4e-25 120.2 206 39.8
BraSC59t46549Z Brassica rapa HOM05D001200 ORTHO05D002731 1.4e-25 120.2 206 39.8
BolSC29t60504H Brassica oleracea HOM05D001200 ORTHO05D002731 1.9e-25 119.8 206 39.8
BolSC37t60791H Brassica oleracea HOM05D001200 ORTHO05D002731 1.9e-25 119.8 206 39.8
Migut.D01384 Erythranthe guttata HOM05D001200 ORTHO05D002731 1.9e-25 119.8 108 61.1
Lj2P1238T97 Lonicera japonica HOM05D001200 ORTHO05D002731 2.5e-25 119.4 136 52.9
SalBow1G7634 Salvia bowleyana HOM05D001200 ORTHO05D002731 2.5e-25 119.4 206 39.8
RcHm_v2.0_Chr5g0017231 Rosa chinensis HOM05D001200 ORTHO05D002731 3.2e-25 119.0 206 40.3
CARHR282420 Cardamine hirsuta HOM05D001200 ORTHO05D002731 4.2e-25 118.6 206 39.3
Oeu053979.1 Olea europaea HOM05D001200 ORTHO05D002731 4.2e-25 118.6 154 48.7
Sed0012006 Sechium edule HOM05D001200 ORTHO05D002731 5.5e-25 118.2 206 40.3
RcHm_v2.0_Chr5g0043051 Rosa chinensis HOM05D001200 ORTHO05D002731 9.4e-25 117.5 206 39.8
BolSC46t60960H Brassica oleracea HOM05D001200 ORTHO05D002731 1.6e-24 116.7 136 50.7
Gohir.1Z049731 Gossypium hirsutum HOM05D001200 ORTHO05D002731 1.6e-24 116.7 206 39.8
GSVIVG01004976001 Vitis vinifera HOM05D001200 ORTHO05D010401 2.1e-24 116.3 139 50.4
SEGI_13011 Sequoiadendron giganteum HOM05D001200 ORTHO05D002731 4.7e-24 115.2 136 50.7
Hund29438 Selenicereus undatus HOM05D001200 ORTHO05D002731 6.1e-24 114.8 109 59.6
C09p40370 Brassica napus HOM05D001200 ORTHO05D002731 1.0e-23 114.0 136 50.0
BolC2t10611H Brassica oleracea HOM05D001200 ORTHO05D002731 1.0e-23 114.0 136 50.0
C06p42250 Brassica napus HOM05D001200 ORTHO05D002731 3.0e-23 112.5 133 49.6
MD04G1189100 Malus domestica HOM05D001200 ORTHO05D002731 3.0e-23 112.5 114 57.0
Hund08793 Selenicereus undatus HOM05D001200 ORTHO05D002731 3.9e-23 112.1 116 56.0
Hund12716 Selenicereus undatus HOM05D001200 ORTHO05D002731 3.9e-23 112.1 116 56.0
Hund12843 Selenicereus undatus HOM05D001200 ORTHO05D002731 3.9e-23 112.1 116 56.0
Hund23968 Selenicereus undatus HOM05D001200 ORTHO05D002731 3.9e-23 112.1 116 56.0
Hund27631 Selenicereus undatus HOM05D001200 ORTHO05D002731 3.9e-23 112.1 116 56.0
Hund27678 Selenicereus undatus HOM05D001200 ORTHO05D002731 3.9e-23 112.1 116 56.0
Hund27755 Selenicereus undatus HOM05D001200 ORTHO05D002731 3.9e-23 112.1 116 56.0
Hund27831 Selenicereus undatus HOM05D001200 ORTHO05D002731 3.9e-23 112.1 116 56.0
Hund28330 Selenicereus undatus HOM05D001200 ORTHO05D002731 3.9e-23 112.1 116 56.0
Hund28438 Selenicereus undatus HOM05D001200 ORTHO05D002731 3.9e-23 112.1 116 56.0
Hund28448 Selenicereus undatus HOM05D001200 ORTHO05D002731 3.9e-23 112.1 116 56.0
Hund28536 Selenicereus undatus HOM05D001200 ORTHO05D002731 3.9e-23 112.1 116 56.0
Hund28587 Selenicereus undatus HOM05D001200 ORTHO05D002731 3.9e-23 112.1 116 56.0
Hund28596 Selenicereus undatus HOM05D001200 ORTHO05D002731 3.9e-23 112.1 116 56.0
Hund28613 Selenicereus undatus HOM05D001200 ORTHO05D002731 3.9e-23 112.1 116 56.0
Hund28850 Selenicereus undatus HOM05D001200 ORTHO05D002731 3.9e-23 112.1 116 56.0
Hund28880 Selenicereus undatus HOM05D001200 ORTHO05D002731 3.9e-23 112.1 116 56.0
Hund28937 Selenicereus undatus HOM05D001200 ORTHO05D002731 3.9e-23 112.1 116 56.0
Hund28946 Selenicereus undatus HOM05D001200 ORTHO05D002731 3.9e-23 112.1 116 56.0
Hund28951 Selenicereus undatus HOM05D001200 ORTHO05D002731 3.9e-23 112.1 116 56.0
Hund28954 Selenicereus undatus HOM05D001200 ORTHO05D002731 3.9e-23 112.1 116 56.0
Hund28961 Selenicereus undatus HOM05D001200 ORTHO05D002731 3.9e-23 112.1 116 56.0
Hund28974 Selenicereus undatus HOM05D001200 ORTHO05D002731 3.9e-23 112.1 116 56.0
Hund28979 Selenicereus undatus HOM05D001200 ORTHO05D002731 3.9e-23 112.1 116 56.0
Hund29026 Selenicereus undatus HOM05D001200 ORTHO05D002731 3.9e-23 112.1 116 56.0
Hund29089 Selenicereus undatus HOM05D001200 ORTHO05D002731 3.9e-23 112.1 116 56.0
Hund29109 Selenicereus undatus HOM05D001200 ORTHO05D002731 3.9e-23 112.1 116 56.0
Hund29179 Selenicereus undatus HOM05D001200 ORTHO05D002731 3.9e-23 112.1 116 56.0
Hund29186 Selenicereus undatus HOM05D001200 ORTHO05D002731 3.9e-23 112.1 116 56.0
Hund29244 Selenicereus undatus HOM05D001200 ORTHO05D002731 3.9e-23 112.1 116 56.0
Hund29247 Selenicereus undatus HOM05D001200 ORTHO05D002731 3.9e-23 112.1 116 56.0
Hund29251 Selenicereus undatus HOM05D001200 ORTHO05D002731 3.9e-23 112.1 116 56.0
Hund29254 Selenicereus undatus HOM05D001200 ORTHO05D002731 3.9e-23 112.1 116 56.0
Hund29261 Selenicereus undatus HOM05D001200 ORTHO05D002731 3.9e-23 112.1 116 56.0
Hund29273 Selenicereus undatus HOM05D001200 ORTHO05D002731 3.9e-23 112.1 116 56.0
Hund29277 Selenicereus undatus HOM05D001200 ORTHO05D002731 3.9e-23 112.1 116 56.0
Hund29281 Selenicereus undatus HOM05D001200 ORTHO05D002731 3.9e-23 112.1 116 56.0
Hund29285 Selenicereus undatus HOM05D001200 ORTHO05D002731 3.9e-23 112.1 116 56.0
Hund29288 Selenicereus undatus HOM05D001200 ORTHO05D002731 3.9e-23 112.1 116 56.0
Hund29316 Selenicereus undatus HOM05D001200 ORTHO05D002731 3.9e-23 112.1 116 56.0
Hund29434 Selenicereus undatus HOM05D001200 ORTHO05D002731 3.9e-23 112.1 116 56.0
Hund29453 Selenicereus undatus HOM05D001200 ORTHO05D002731 3.9e-23 112.1 116 56.0
Hund29499 Selenicereus undatus HOM05D001200 ORTHO05D002731 3.9e-23 112.1 116 56.0
Hund29654 Selenicereus undatus HOM05D001200 ORTHO05D002731 3.9e-23 112.1 116 56.0
Hund29713 Selenicereus undatus HOM05D001200 ORTHO05D002731 3.9e-23 112.1 116 56.0
Hund29755 Selenicereus undatus HOM05D001200 ORTHO05D002731 3.9e-23 112.1 116 56.0
Hund29814 Selenicereus undatus HOM05D001200 ORTHO05D002731 3.9e-23 112.1 116 56.0
Hund29818 Selenicereus undatus HOM05D001200 ORTHO05D002731 3.9e-23 112.1 116 56.0
Hund30036 Selenicereus undatus HOM05D001200 ORTHO05D002731 3.9e-23 112.1 116 56.0
Hund30039 Selenicereus undatus HOM05D001200 ORTHO05D002731 3.9e-23 112.1 116 56.0
Hund30120 Selenicereus undatus HOM05D001200 ORTHO05D002731 3.9e-23 112.1 116 56.0
Hund30177 Selenicereus undatus HOM05D001200 ORTHO05D002731 3.9e-23 112.1 116 56.0
Hund30365 Selenicereus undatus HOM05D001200 ORTHO05D002731 3.9e-23 112.1 116 56.0
Hund30388 Selenicereus undatus HOM05D001200 ORTHO05D002731 3.9e-23 112.1 116 56.0
Medtr4g006120 Medicago truncatula HOM05D001200 ORTHO05D002731 2.0e-22 109.8 206 37.9
Medtr4g050950 Medicago truncatula HOM05D001200 ORTHO05D002731 2.0e-22 109.8 206 37.9
arahy.Tifrunner.gnm1.ann1.2QK9Z7 Arachis hypogaea HOM05D001200 ORTHO05D002731 1.7e-21 106.7 133 47.4
Gohir.A01G143400 Gossypium hirsutum HOM05D001200 ORTHO05D002731 1.1e-20 104.0 179 40.2
Ciclev10030459m.g Citrus clementina HOM05D001200 ORTHO05D010401 4.1e-20 102.1 128 48.4
Migut.D01255 Erythranthe guttata HOM05D001200 ORTHO05D010401 9.1e-20 100.9 121 52.9
Peaxi162Scf00030g02118 Petunia axillaris HOM05D001200 ORTHO05D002731 1.5e-19 100.1 165 41.8
Medtr4g106580 Medicago truncatula HOM05D001200 ORTHO05D002731 1.0e-18 97.4 88 61.4
RcHm_v2.0_CPg0502801 Rosa chinensis HOM05D001200 ORTHO05D002731 5.0e-18 95.1 104 51.0
Ciclev10010880m.g Citrus clementina HOM05D001200 ORTHO05D002731 1.4e-17 93.6 71 66.2
Ciclev10006660m.g Citrus clementina HOM05D001200 ORTHO05D002731 1.9e-17 93.2 101 52.5
Medtr2g103350 Medicago truncatula HOM05D001200 ORTHO05D002731 1.9e-17 93.2 125 46.4
arahy.Tifrunner.gnm1.ann1.D1ZPVC Arachis hypogaea HOM05D001200 ORTHO05D002731 2.5e-17 92.8 82 64.6
Medtr7g021720 Medicago truncatula HOM05D001200 ORTHO05D002731 2.5e-17 92.8 206 34.0
Medtr7g108460 Medicago truncatula HOM05D001200 ORTHO05D002731 2.5e-17 92.8 127 45.7
HanXRQChr08g0211971 Helianthus annuus HOM05D001200 ORTHO05D002731 4.2e-17 92.0 71 66.2
BolSC44t60820H Brassica oleracea HOM05D001200 ORTHO05D002731 5.5e-17 91.7 94 54.3
HanXRQChr00c0196g0572481 Helianthus annuus HOM05D001200 ORTHO05D002731 5.5e-17 91.7 101 51.5
BraSC59t46528Z Brassica rapa HOM05D001200 ORTHO05D002731 7.2e-17 91.3 69 65.2
Medtr3g073110 Medicago truncatula HOM05D001200 ORTHO05D002731 2.7e-16 89.4 128 44.5
Ciclev10013969m.g Citrus clementina HOM05D001200 ORTHO05D002731 3.6e-16 89.0 68 64.7
Ciclev10013974m.g Citrus clementina HOM05D001200 ORTHO05D002731 3.6e-16 89.0 68 64.7
Ciclev10027650m.g Citrus clementina HOM05D001200 ORTHO05D002731 3.6e-16 89.0 68 64.7
BolSC29t60544H Brassica oleracea HOM05D001200 ORTHO05D002731 6.1e-16 88.2 95 53.7
Peaxi162Scf01164g00035 Petunia axillaris HOM05D001200 ORTHO05D002731 6.1e-16 88.2 95 53.7
BolSC47t61066H Brassica oleracea HOM05D001200 ORTHO05D002731 1.4e-15 87.0 47 85.1
Lalb_Chr23g0274791 Lupinus albus HOM05D001200 ORTHO05D002731 5.2e-15 85.1 94 53.2
Lalb_Chr07g0191761 Lupinus albus HOM05D001200 ORTHO05D002731 3.3e-14 82.4 53 79.2
Medtr2g042860 Medicago truncatula HOM05D001200 ORTHO05D002731 4.4e-14 82.0 106 46.2
BolC2t08908H Brassica oleracea HOM05D001200 ORTHO05D002731 1.3e-13 80.5 47 78.7
CsaV3_UNG210140 Cucumis sativus L. HOM05D001200 ORTHO05D002731 1.3e-13 80.5 47 80.9
Medtr4g080900 Medicago truncatula HOM05D001200 ORTHO05D002731 1.3e-13 80.5 160 35.0
Medtr1g081540 Medicago truncatula HOM05D001200 ORTHO05D002731 4.8e-13 78.6 91 51.6
Medtr7g012690 Medicago truncatula HOM05D001200 ORTHO05D002731 2.4e-12 76.3 102 48.0
Medtr5g099080 Medicago truncatula HOM05D001200 ORTHO05D002731 3.1e-12 75.9 85 50.6
Medtr7g075220 Medicago truncatula HOM05D000504 ORTHO05D002731 3.1e-12 75.9 101 45.5
Medtr2g048620 Medicago truncatula HOM05D001200 ORTHO05D002731 4.1e-12 75.5 85 51.8
Medtr5g089040 Medicago truncatula HOM05D001200 ORTHO05D002731 1.2e-11 73.9 120 39.2
Ciclev10027631m.g Citrus clementina HOM05D001200 ORTHO05D002731 2.6e-11 72.8 153 37.3
Medtr3g082380 Medicago truncatula HOM05D001200 ORTHO05D002731 2.6e-11 72.8 115 44.3
SMO086G0020 Selaginella moellendorffii HOM05D001200 ORTHO05D002731 4.5e-11 72.0 161 32.9
SabraPtG0005600 Salix brachista HOM05D000533 ORTHO05D006151 5.9e-11 71.6 68 60.3
Medtr5g032430 Medicago truncatula HOM05D001200 ORTHO05D002731 1.3e-10 70.5 111 45.0
HanXRQChr00c0328g0573601 Helianthus annuus HOM05D001200 ORTHO05D002731 2.2e-10 69.7 38 89.5
HanXRQChr03g0073091 Helianthus annuus HOM05D001200 ORTHO05D002731 2.2e-10 69.7 108 42.6
HanXRQChr06g0183001 Helianthus annuus HOM05D001200 ORTHO05D002731 2.2e-10 69.7 108 42.6
Medtr3g109440 Medicago truncatula HOM05D001200 ORTHO05D002731 2.9e-10 69.3 88 48.9
Lsat_1_v5_gn_1_14200 Lactuca sativa HOM05D001200 ORTHO05D002731 5.0e-10 68.6 38 86.8
Medtr7g086590 Medicago truncatula HOM05D001200 ORTHO05D002731 1.9e-09 66.6 43 74.4
CAN.G100.34 Capsicum annuum HOM05D001200 ORTHO05D002731 3.2e-09 65.9 48 70.8
HanXRQChr17g0557761 Helianthus annuus HOM05D001200 ORTHO05D002731 4.2e-09 65.5 35 82.9
Oeu012819.1 Olea europaea HOM05D001200 ORTHO05D002731 7.2e-09 64.7 77 46.8
Solyc11g021213.1 Solanum lycopersicum HOM05D001200 ORTHO05D002731 1.6e-08 63.5 104 41.3
HanXRQChr07g0204721 Helianthus annuus HOM05D001200 ORTHO05D002731 2.1e-08 63.2 37 81.1
Solyc02g011750.1 Solanum lycopersicum HOM05D001200 ORTHO05D002731 2.7e-08 62.8 63 54.0
Medtr3g071600 Medicago truncatula HOM05D001200 ORTHO05D002731 3.6e-08 62.4 83 45.8
Medtr1g085100 Medicago truncatula HOM05D001200 ORTHO05D002731 4.7e-08 62.0 46 67.4
Medtr4g086110 Medicago truncatula HOM05D001200 ORTHO05D002731 4.7e-08 62.0 117 36.8
BolSC35t60702H Brassica oleracea HOM05D001200 ORTHO05D002731 6.1e-08 61.6 108 38.9
Phvul.002G050301 Phaseolus vulgaris HOM05D001200 ORTHO05D002731 6.1e-08 61.6 108 38.0
Pp3c2_10430 Physcomitrium patens HOM05D001200 ORTHO05D002731 6.1e-08 61.6 43 62.8
Medtr0148s0110 Medicago truncatula HOM05D001200 ORTHO05D002731 8.0e-08 61.2 39 74.4
Gohir.A02G134201 Gossypium hirsutum HOM05D001200 ORTHO05D010401 1.4e-07 60.5 108 38.0
Gohir.A13G109925 Gossypium hirsutum HOM05D001200 ORTHO05D002731 1.4e-07 60.5 39 74.4
Medtr5g094180 Medicago truncatula HOM05D001200 ORTHO05D002731 1.4e-07 60.5 44 63.6
Hund03917 Selenicereus undatus HOM05D001200 ORTHO05D002731 2.3e-07 59.7 44 72.7
TPR.G24765 Trifolium pratense HOM05D001200 ORTHO05D002731 4.0e-07 58.9 38 73.7
arahy.Tifrunner.gnm1.ann1.FIPJ9G Arachis hypogaea HOM05D001200 ORTHO05D002731 6.7e-07 58.2 38 71.1
Solyc01g065610.1 Solanum lycopersicum HOM05D001200 ORTHO05D002731 8.8e-07 57.8 44 68.2
Medtr5g021300 Medicago truncatula HOM05D001200 ORTHO05D002731 1.2e-06 57.4 85 44.7
BolC7t43854H Brassica oleracea HOM05D001200 ORTHO05D002731 2.6e-06 56.2 38 73.7
Medtr3g008330 Medicago truncatula HOM05D001200 ORTHO05D002731 2.6e-06 56.2 98 34.7
Nitab4.5_0001342g0130 Nicotiana tabacum HOM05D001200 ORTHO05D002731 2.6e-06 56.2 174 32.2
Solyc01g065630.1 Solanum lycopersicum HOM05D001200 ORTHO05D002731 2.6e-06 56.2 48 62.5
CAN.G95.10 Capsicum annuum HOM05D001200 ORTHO05D002731 3.3e-06 55.8 37 75.7
Medtr5g464700 Medicago truncatula HOM05D001200 ORTHO05D002731 3.3e-06 55.8 88 42.0
Medtr1g103000 Medicago truncatula HOM05D001200 ORTHO05D002731 7.5e-06 54.7 38 65.8
Medtr8g086440 Medicago truncatula HOM05D001200 ORTHO05D002731 7.5e-06 54.7 38 63.2


User provided reference genes

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