Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038493 Camellia sinensis var. sinensis HOM05D003762 ORTHO05D004374 2.1e-191 672.2 333 100.0
CSS0030442 Camellia sinensis var. sinensis HOM05D003762 ORTHO05D004374 6.7e-129 464.5 237 97.0
Rhsim05G0080000 Rhododendron simsii HOM05D003762 ORTHO05D004374 5.0e-100 368.6 243 74.1
Actinidia15994 Actinidia chinensis HOM05D003762 ORTHO05D004374 8.5e-100 367.9 236 75.0
Dinv08128 Davidia involucrata HOM05D003762 ORTHO05D004374 2.1e-98 363.2 236 77.1
vmacro11452 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 1.3e-95 354.0 237 73.8
Hma1.2p1_0515F.1_g170140 Hydrangea macrophylla HOM05D003762 ORTHO05D004374 4.5e-93 345.5 234 73.1
Rhsim11G0183700 Rhododendron simsii HOM05D003762 ORTHO05D004374 3.2e-91 339.3 231 73.2
Cc08_g05300 Coffea canephora HOM05D003762 ORTHO05D004374 8.3e-87 324.7 249 63.9
GSVIVG01004444001 Vitis vinifera HOM05D003762 ORTHO05D004374 2.0e-85 320.1 258 65.1
QL01p011549 Quercus lobata HOM05D003762 ORTHO05D004374 3.4e-80 302.8 239 63.6
Nitab4.5_0000898g0100 Nicotiana tabacum HOM05D003762 ORTHO05D004374 9.8e-80 301.2 242 59.9
Nn1g05222 Nelumbo nucifera HOM05D003762 ORTHO05D004374 1.7e-79 300.4 240 62.1
GSVIVG01017309001 Vitis vinifera HOM05D003762 ORTHO05D004374 1.7e-79 300.4 250 62.8
CAN.G812.32 Capsicum annuum HOM05D003762 ORTHO05D004374 8.3e-79 298.1 240 59.2
Peaxi162Scf00053g00522 Petunia axillaris HOM05D003762 ORTHO05D004374 1.4e-78 297.4 239 61.9
Manes.04G114300 Manihot esculenta HOM05D003762 ORTHO05D004374 2.4e-78 296.6 231 64.1
Nitab4.5_0000255g0050 Nicotiana tabacum HOM05D003762 ORTHO05D004374 7.0e-78 295.0 239 59.0
CiPaw.09G152500 Carya illinoinensis HOM05D003762 ORTHO05D004374 5.0e-76 288.9 240 61.2
Potri.018G000800 Populus trichocarpa HOM05D003762 ORTHO05D004374 1.9e-75 287.0 240 60.4
MSTRG.11877 Avicennia marina HOM05D003762 ORTHO05D004374 4.2e-75 285.8 237 59.1
ECA246G1447 Erigeron canadensis HOM05D000759 ORTHO05D000574 1.2e-74 284.3 230 59.1
Oeu056611.1 Olea europaea HOM05D003762 ORTHO05D004374 2.8e-74 283.1 236 59.7
Phvul.008G021700 Phaseolus vulgaris HOM05D003762 ORTHO05D004374 4.7e-74 282.3 240 58.8
Glyma.18G279200 Glycine max HOM05D003762 ORTHO05D004374 1.0e-73 281.2 242 58.3
CANSAT35G0296 Cannabis sativa HOM05D003762 ORTHO05D004374 1.4e-73 280.8 240 59.2
Prupe.1G576300 Prunus persica HOM05D003762 ORTHO05D004374 1.4e-73 280.8 232 59.1
Sabra01G0002500 Salix brachista HOM05D003762 ORTHO05D004374 1.4e-73 280.8 240 58.8
Thecc.06G021200 Theobroma cacao HOM05D003762 ORTHO05D004374 1.4e-73 280.8 238 58.8
Duzib160G0900 Durio zibethinus HOM05D003762 ORTHO05D004374 1.8e-73 280.4 238 59.2
Prupe.5G067300 Prunus persica HOM05D003762 ORTHO05D004374 2.3e-73 280.0 232 58.6
VMungo1383G0008 Vigna mungo HOM05D003762 ORTHO05D004374 3.0e-73 279.6 240 57.9
Cfa001979 Carpinus fangiana HOM05D003762 ORTHO05D004374 4.0e-73 279.3 240 59.6
arahy.Tifrunner.gnm1.ann1.VKA3KK Arachis hypogaea HOM05D003762 ORTHO05D004374 6.8e-73 278.5 250 56.4
Potri.001G003700 Populus trichocarpa HOM05D003762 ORTHO05D004374 1.2e-72 277.7 240 58.8
arahy.Tifrunner.gnm1.ann1.IN3X4V Arachis hypogaea HOM05D003762 ORTHO05D004374 2.6e-72 276.6 250 56.0
Cpa.g.sc37.21 Carica papaya HOM05D003762 ORTHO05D004374 2.6e-72 276.6 230 59.6
Sopen08g024260 Solanum pennellii HOM05D003762 ORTHO05D004374 4.4e-72 275.8 237 57.8
Atru.chr1.3040 Acer truncatum HOM05D003762 ORTHO05D004374 9.8e-72 274.6 232 60.3
Potri.003G033600 Populus trichocarpa HOM05D003762 ORTHO05D004374 2.8e-71 273.1 243 58.0
PGSC0003DMG400003846 Solanum tuberosum HOM05D003762 ORTHO05D004374 2.8e-71 273.1 241 56.8
PGSC0003DMG402007612 Solanum tuberosum HOM05D003762 ORTHO05D004374 3.7e-71 272.7 237 57.8
Ciclev10026399m.g Citrus clementina HOM05D003762 ORTHO05D004374 4.9e-71 272.3 232 58.6
Lsat_1_v5_gn_3_23460 Lactuca sativa HOM05D003762 ORTHO05D004374 1.1e-70 271.2 224 60.7
Gorai.005G071700 Gossypium raimondii HOM05D003762 ORTHO05D004374 1.8e-70 270.4 228 57.9
Gohir.A02G058000 Gossypium hirsutum HOM05D003762 ORTHO05D004374 4.1e-70 269.2 228 57.9
Gohir.D02G063800 Gossypium hirsutum HOM05D003762 ORTHO05D004374 1.2e-69 267.7 228 57.5
HanXRQChr17g0537091 Helianthus annuus HOM05D003762 ORTHO05D004374 1.2e-69 267.7 200 62.5
DCAR_002196 Daucus carota HOM05D003762 ORTHO05D004374 3.5e-69 266.2 240 56.2
Migut.J01128 Erythranthe guttata HOM05D003762 ORTHO05D004374 1.3e-68 264.2 234 55.1
ClCG02G018290 Citrullus lanatus HOM05D003762 ORTHO05D004374 2.9e-68 263.1 242 55.0
MD15G1431400 Malus domestica HOM05D003762 ORTHO05D004374 1.1e-67 261.2 200 63.0
Sed0021000 Sechium edule HOM05D003762 ORTHO05D004374 1.5e-67 260.8 243 54.7
TWI56G0980 Tripterygium wilfordii HOM05D003762 ORTHO05D004374 7.3e-67 258.5 240 51.7
Eucgr.F01771 Eucalyptus grandis HOM05D003762 ORTHO05D004374 1.2e-66 257.7 230 51.7
Ca_06841_v3 Cicer arietinum L. HOM05D003762 ORTHO05D004374 3.6e-66 256.1 237 54.0
ECA240G1229 Erigeron canadensis HOM05D003762 ORTHO05D004374 2.3e-65 253.4 229 56.8
TWI36G0443 Tripterygium wilfordii HOM05D003762 ORTHO05D004374 2.3e-65 253.4 237 51.9
Lj8P331T26 Lonicera japonica HOM05D003762 ORTHO05D004374 3.1e-65 253.1 198 63.6
Eucgr.J01004 Eucalyptus grandis HOM05D003762 ORTHO05D004374 5.2e-65 252.3 225 53.8
Aqoxy6G02090 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 2.0e-64 250.4 240 54.6
SGA_v2.0_scaffold120G32921 Striga asiatica HOM05D003762 ORTHO05D004374 5.8e-64 248.8 239 54.8
COL.COLO4_12944 Corchorus olitorius HOM05D003762 ORTHO05D004374 7.5e-64 248.4 244 50.4
MELO3C014058.2 Cucumis melo HOM05D003762 ORTHO05D004374 9.8e-64 248.1 244 53.3
CAN.G2872.1 Capsicum annuum HOM05D003762 ORTHO05D004374 1.3e-63 247.7 211 57.3
SGA_v2.0_scaffold146G36137 Striga asiatica HOM05D003762 ORTHO05D004374 2.9e-63 246.5 235 52.3
CAN.G1683.1 Capsicum annuum HOM05D003762 ORTHO05D004374 3.7e-63 246.1 211 56.9
PGR044G0538 Punica granatum HOM05D003762 ORTHO05D004374 6.4e-63 245.4 232 56.9
CsaV3_3G003760 Cucumis sativus L. HOM05D003762 ORTHO05D004374 1.1e-62 244.6 244 52.5
Lj1g0002607 Lotus japonicus HOM05D003762 ORTHO05D004374 1.1e-62 244.6 239 51.9
FAN14G5252 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.4e-62 244.2 241 51.9
FAN02G0052 Fragaria x ananassa HOM05D003762 ORTHO05D004374 2.4e-62 243.4 238 52.5
FAN05G3809 Fragaria x ananassa HOM05D003762 ORTHO05D004374 4.1e-62 242.7 238 52.1
HanXRQChr03g0081311 Helianthus annuus HOM05D003762 ORTHO05D004374 5.4e-62 242.3 234 52.1
ClCG00G001180 Citrullus lanatus HOM05D003762 ORTHO05D004374 7.0e-62 241.9 245 50.6
ClCG10G003800 Citrullus lanatus HOM05D003762 ORTHO05D004374 7.0e-62 241.9 245 50.6
FvH4_6g29950 Fragaria vesca HOM05D003762 ORTHO05D004374 7.0e-62 241.9 238 52.1
DCAR_030901 Daucus carota HOM05D003762 ORTHO05D004374 1.2e-61 241.1 241 50.2
FAN09G0714 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.2e-61 241.1 238 51.7
arahy.Tifrunner.gnm1.ann1.RFRX47 Arachis hypogaea HOM05D003762 ORTHO05D004374 3.5e-61 239.6 232 52.6
arahy.Tifrunner.gnm1.ann1.1PQR27 Arachis hypogaea HOM05D003762 ORTHO05D004374 2.3e-60 236.9 232 52.6
Aqoxy6G01949 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 3.0e-60 236.5 240 49.2
Lalb_Chr17g0343451 Lupinus albus HOM05D003762 ORTHO05D004374 5.0e-60 235.7 231 49.8
Psat4g001640 Pisum sativum HOM05D003762 ORTHO05D004374 5.0e-60 235.7 238 52.1
MBI14_g44482_MAGBIO Magnolia biondii HOM05D003762 ORTHO05D004374 8.6e-60 235.0 235 51.5
arahy.Tifrunner.gnm1.ann1.3GPH34 Arachis hypogaea HOM05D003762 ORTHO05D004374 3.3e-59 233.0 215 53.5
Sc24g0003260 Simmondsia chinensis HOM05D003762 ORTHO05D004374 7.3e-59 231.9 242 52.1
Haze_16536 Corylus avellana HOM05D003762 ORTHO05D004374 4.7e-58 229.2 211 57.3
Peaxi162Scf00573g00044 Petunia axillaris HOM05D003762 ORTHO05D004374 4.7e-58 229.2 221 54.8
Phvul.010G127200 Phaseolus vulgaris HOM05D003762 ORTHO05D004374 1.8e-57 227.3 233 48.1
Glyma.07G041800 Glycine max HOM05D003762 ORTHO05D004374 2.3e-57 226.9 231 47.2
TAR625G0731 Trochodendron aralioides HOM05D003762 ORTHO05D004374 1.5e-56 224.2 205 56.6
RcHm_v2.0_Chr6g0271261 Rosa chinensis HOM05D003762 ORTHO05D004374 3.4e-56 223.0 238 49.6
Glyma.09G089900 Glycine max HOM05D003762 ORTHO05D004374 9.8e-56 221.5 236 48.3
Ah.03g133930 Amaranthus hybridus HOM05D003762 ORTHO05D004374 2.2e-55 220.3 237 50.2
RcHm_v2.0_Chr6g0271271 Rosa chinensis HOM05D003762 ORTHO05D004374 3.7e-55 219.5 238 49.2
RcHm_v2.0_Chr2g0135951 Rosa chinensis HOM05D003762 ORTHO05D004374 6.4e-55 218.8 238 49.2
SalBow2G2359 Salvia bowleyana HOM05D003762 ORTHO05D004374 5.4e-54 215.7 230 48.3
Sed0000714 Sechium edule HOM05D003762 ORTHO05D004374 7.1e-54 215.3 213 50.7
vmacro16904 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 7.1e-54 215.3 165 63.6
TPR.G19896 Trifolium pratense HOM05D003762 ORTHO05D004374 1.2e-53 214.5 240 49.2
PSO455G0078 Papaver somniferum HOM05D003762 ORTHO05D004374 1.0e-52 211.5 235 46.0
Ciclev10009494m.g Citrus clementina HOM05D003762 ORTHO05D004374 1.7e-52 210.7 232 49.6
AUR62024643 Chenopodium quinoa HOM05D003762 ORTHO05D004374 3.0e-52 209.9 230 46.5
THA.LOC104798921 Tarenaya hassleriana HOM05D003762 ORTHO05D004374 3.0e-52 209.9 234 48.7
Hund13161 Selenicereus undatus HOM05D003762 ORTHO05D004374 5.1e-52 209.1 227 47.1
PSO170G1737 Papaver somniferum HOM05D003762 ORTHO05D004374 8.6e-52 208.4 238 47.9
Solyc08g075580.3 Solanum lycopersicum HOM05D003762 ORTHO05D004374 1.1e-51 208.0 153 66.0
HPP92_015034 Vanilla planifolia HOM05D003762 ORTHO05D004374 3.3e-51 206.5 216 49.5
Rhsim12G0192200 Rhododendron simsii HOM05D003762 ORTHO05D004374 5.6e-51 205.7 236 50.4
TAR636G2311 Trochodendron aralioides HOM05D003762 ORTHO05D004374 1.8e-49 200.7 154 61.7
Lsat_1_v5_gn_3_23440 Lactuca sativa HOM05D003762 ORTHO05D004374 3.1e-49 199.9 183 55.2
Aa31sc38G110 Aethionema arabicum HOM05D003762 ORTHO05D004374 5.2e-49 199.1 249 44.2
Sp2g23520 Schrenkiella parvula HOM05D003762 ORTHO05D004374 2.6e-48 196.8 233 45.5
AT5G23710 Arabidopsis thaliana HOM05D003762 ORTHO05D004374 4.4e-48 196.1 235 46.4
Thhalv10005351m.g Eutrema salsugineum HOM05D003762 ORTHO05D004374 7.6e-48 195.3 238 45.0
A06p34610 Brassica napus HOM05D003762 ORTHO05D004374 9.9e-48 194.9 232 44.0
C07p43880 Brassica napus HOM05D003762 ORTHO05D004374 9.9e-48 194.9 232 43.5
BraA06t26389Z Brassica rapa HOM05D003762 ORTHO05D004374 9.9e-48 194.9 232 44.0
BcaNung01845 Brassica carinata HOM05D003762 ORTHO05D004374 1.3e-47 194.5 232 43.5
BolC7t44916H Brassica oleracea HOM05D003762 ORTHO05D004374 1.3e-47 194.5 232 43.5
AL6G34980 Arabidopsis lyrata HOM05D003762 ORTHO05D004374 1.7e-47 194.1 235 45.1
FAN09G1243 Fragaria x ananassa HOM05D003762 ORTHO05D004374 6.4e-47 192.2 240 46.7
Oeu056610.1 Olea europaea HOM05D003762 ORTHO05D004374 1.1e-46 191.4 147 61.2
Atru.chr1.3022 Acer truncatum HOM05D003762 ORTHO05D004374 1.4e-46 191.0 154 59.7
Carub.0006s2146 Capsella rubella HOM05D003762 ORTHO05D004374 4.1e-46 189.5 235 44.7
Aa31LG11G3050 Aethionema arabicum HOM05D003762 ORTHO05D004374 7.1e-46 188.7 233 42.9
ATR0580G255 Amborella trichopoda HOM05D003762 ORTHO05D004374 3.0e-44 183.3 230 42.2
TPR.G20064 Trifolium pratense HOM05D003762 ORTHO05D004374 3.9e-44 183.0 237 42.6
Medtr7g109780 Medicago truncatula HOM05D003762 ORTHO05D004374 1.1e-43 181.4 194 47.9
CARHR189840 Cardamine hirsuta HOM05D003762 ORTHO05D004374 1.5e-43 181.0 234 41.5
QL03p059502 Quercus lobata HOM05D003762 ORTHO05D004374 4.3e-43 179.5 230 43.0
VMungo0331G0552 Vigna mungo HOM05D003762 ORTHO05D004374 7.3e-43 178.7 204 44.1
Mapoly0090s0008 Marchantia polymorpha HOM05D003762 ORTHO05D004374 1.6e-42 177.6 215 42.8
Oeu039594.1 Olea europaea HOM05D003762 ORTHO05D004374 2.8e-42 176.8 169 54.4
A09p06830 Brassica napus HOM05D003762 ORTHO05D004374 3.6e-42 176.4 232 45.3
BraA09t36329Z Brassica rapa HOM05D003762 ORTHO05D004374 3.6e-42 176.4 212 47.6
MELO3C007348.2 Cucumis melo HOM05D003762 ORTHO05D004374 1.1e-41 174.9 192 47.9
AagrBONN_evm.TU.Sc2ySwM_228.1250 Anthoceros agrestis HOM05D003762 ORTHO05D004374 3.1e-41 173.3 256 35.5
BolC9t53671H Brassica oleracea HOM05D003762 ORTHO05D004374 4.0e-41 172.9 232 44.0
unitig_0.g2831 Utricularia gibba HOM05D003762 ORTHO05D004374 5.2e-41 172.6 217 42.9
Pp3c22_6800 Physcomitrium patens HOM05D003762 ORTHO05D004374 2.6e-40 170.2 215 38.1
Zm00001eb276730 Zea mays HOM05D003762 ORTHO05D004374 7.6e-40 168.7 220 39.5
BcaC04g23509 Brassica carinata HOM05D003762 ORTHO05D004374 1.3e-39 167.9 229 42.8
Zm00001eb386260 Zea mays HOM05D003762 ORTHO05D004374 1.4e-38 164.5 233 38.2
HPP92_015113 Vanilla planifolia HOM05D003762 ORTHO05D004374 4.2e-38 162.9 155 49.7
Cre07.g314950 Chlamydomonas reinhardtii HOM05D003762 ORTHO05D004374 1.6e-37 161.0 216 39.4
Medtr0003s0690 Medicago truncatula HOM05D003762 ORTHO05D004374 2.7e-37 160.2 178 43.8
C09p07550 Brassica napus HOM05D003762 ORTHO05D004374 3.5e-37 159.8 232 42.2
BcaB04g19852 Brassica carinata HOM05D003762 ORTHO05D004374 1.3e-36 157.9 232 42.7
BcaB04g19853 Brassica carinata HOM05D003762 ORTHO05D004374 1.3e-36 157.9 232 42.7
QL06p036898 Quercus lobata HOM05D003762 ORTHO05D004374 5.1e-36 156.0 122 63.1
FAN02G2701 Fragaria x ananassa HOM05D003762 ORTHO05D004374 2.1e-34 150.6 217 44.2
PSO455G0143 Papaver somniferum HOM05D003762 ORTHO05D004374 4.8e-34 149.4 231 39.4
MCO15G473 Micromonas commoda HOM05D003762 ORTHO05D004374 6.9e-33 145.6 225 32.9
vmacro18986 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 9.0e-33 145.2 221 40.7
Zm00001eb356740 Zea mays HOM05D003762 ORTHO05D004374 1.1e-30 138.3 194 37.6
Atru.chr1.3024 Acer truncatum HOM05D003762 ORTHO05D004374 4.2e-30 136.3 112 62.5
MD08G1239800 Malus domestica HOM05D003762 ORTHO05D004374 1.2e-29 134.8 118 56.8
VMungo0720G1683 Vigna mungo HOM05D003762 ORTHO05D004374 1.7e-28 131.0 139 45.3
FAN05G0849 Fragaria x ananassa HOM05D003762 ORTHO05D004374 2.3e-28 130.6 208 42.3
HanXRQChr03g0081131 Helianthus annuus HOM05D003762 ORTHO05D004374 3.4e-24 116.7 80 68.8
Nitab4.5_0009310g0060 Nicotiana tabacum HOM05D003762 ORTHO05D004374 2.9e-23 113.6 96 60.4
AUR62011796 Chenopodium quinoa HOM05D003762 ORTHO05D004374 4.2e-22 109.8 117 48.7
FvH4_6g41460 Fragaria vesca HOM05D003762 ORTHO05D004374 4.2e-22 109.8 142 47.9
FAN14G0588 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.6e-21 107.8 144 45.8
Nn1g05046 Nelumbo nucifera HOM05D002280 ORTHO05D002322 7.9e-21 105.5 88 53.4
Potri.003G221301 Populus trichocarpa HOM05D003762 ORTHO05D004374 1.0e-20 105.1 198 36.4
QL05p029016 Quercus lobata HOM05D003762 ORTHO05D004374 1.8e-20 104.4 91 56.0
Aqoxy6G01956 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 3.0e-20 103.6 92 51.1
PRCOL_00004812 Prasinoderma coloniale HOM05D003762 ORTHO05D004374 6.7e-20 102.4 152 33.6
Atru.chr1.3033 Acer truncatum HOM05D003762 ORTHO05D004374 3.1e-17 93.6 78 59.0
SEGI_04069 Sequoiadendron giganteum HOM05D003762 ORTHO05D004374 4.2e-14 83.2 80 48.8
Nitab4.5_0009310g0070 Nicotiana tabacum HOM05D003419 ORTHO05D004374 2.7e-13 80.5 102 48.0
Nitab4.5_0004267g0010 Nicotiana tabacum HOM05D003762 ORTHO05D004374 4.6e-13 79.7 53 71.7
PSO384G2135 Papaver somniferum HOM05D003762 ORTHO05D004374 8.7e-12 75.5 99 39.4
PSO384G3622 Papaver somniferum HOM05D003762 ORTHO05D004374 8.7e-12 75.5 99 39.4
VMungo1383G0391 Vigna mungo HOM05D003762 ORTHO05D004374 5.7e-11 72.8 97 35.1
TAR636G2069 Trochodendron aralioides HOM05D003762 ORTHO05D004374 3.7e-10 70.1 70 54.3
SEGI_04929 Sequoiadendron giganteum HOM05D003762 ORTHO05D004374 2.4e-09 67.4 78 38.5
Os06g0603400 Oryza sativa ssp. japonica HOM05D003762 ORTHO05D004374 3.1e-09 67.0 54 59.3


User provided reference genes

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