Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038486 Camellia sinensis var. sinensis HOM05D005168 ORTHO05D006358 4.8e-69 264.2 122 100.0
CSS0004439 Camellia sinensis var. sinensis HOM05D005168 ORTHO05D006358 8.0e-64 246.9 124 95.2
Actinidia37940 Actinidia chinensis HOM05D005168 ORTHO05D006358 5.4e-52 207.6 122 78.7
vmacro04368 Vaccinium macrocarpon HOM05D005168 ORTHO05D006358 3.1e-47 191.8 120 72.5
SGA_v2.0_scaffold47G17500 Striga asiatica HOM05D005168 ORTHO05D006358 1.2e-46 189.9 122 69.7
SGA_v2.0_scaffold19G08553 Striga asiatica HOM05D005168 ORTHO05D006358 5.8e-46 187.6 122 68.9
Solyc04g054510.4 Solanum lycopersicum HOM05D005168 ORTHO05D006358 9.8e-46 186.8 122 71.3
PGSC0003DMG400022038 Solanum tuberosum HOM05D005168 ORTHO05D006358 9.8e-46 186.8 122 71.3
MSTRG.22344 Avicennia marina HOM05D005168 ORTHO05D006358 1.3e-45 186.4 120 68.3
Nitab4.5_0000337g0010 Nicotiana tabacum HOM05D005168 ORTHO05D006358 3.7e-45 184.9 122 68.9
Nitab4.5_0003251g0060 Nicotiana tabacum HOM05D005168 ORTHO05D006358 3.7e-45 184.9 122 68.9
Hma1.2p1_0733F.1_g210170 Hydrangea macrophylla HOM05D005168 ORTHO05D006358 3.2e-44 181.8 122 68.9
CAN.G727.4 Capsicum annuum HOM05D005168 ORTHO05D006358 2.1e-43 179.1 122 67.2
Peaxi162Scf00553g00216 Petunia axillaris HOM05D005168 ORTHO05D006358 7.8e-43 177.2 122 65.6
SalBow8G1113 Salvia bowleyana HOM05D005168 ORTHO05D006358 2.3e-42 175.6 120 63.3
DCAR_015742 Daucus carota HOM05D005168 ORTHO05D006358 5.1e-42 174.5 122 63.1
Migut.N03173 Erythranthe guttata HOM05D005168 ORTHO05D006358 6.6e-42 174.1 120 62.5
Cc10_g01450 Coffea canephora HOM05D005168 ORTHO05D006358 8.6e-42 173.7 119 64.7
Rhsim07G0250400 Rhododendron simsii HOM05D005168 ORTHO05D006358 1.2e-40 169.9 122 66.4
Sopen04g024330 Solanum pennellii HOM05D005168 ORTHO05D006358 5.8e-38 161.0 108 70.4
Lsat_1_v5_gn_2_14120 Lactuca sativa HOM05D005168 ORTHO05D006358 1.7e-37 159.5 118 60.2
Dinv40488 Davidia involucrata HOM05D005168 ORTHO05D006358 6.4e-37 157.5 105 69.5
unitig_22.g6797 Utricularia gibba HOM05D005168 ORTHO05D006358 2.1e-35 152.5 120 56.7
TWI56G1449 Tripterygium wilfordii HOM05D005168 ORTHO05D006358 3.0e-34 148.7 120 56.7
HanXRQChr04g0101211 Helianthus annuus HOM05D005168 ORTHO05D006358 3.9e-34 148.3 118 55.1
ECA238G1857 Erigeron canadensis HOM05D005168 ORTHO05D006358 5.1e-34 147.9 118 54.2
Nn3g19859 Nelumbo nucifera HOM05D005168 ORTHO05D006358 2.5e-33 145.6 126 54.8
PSO541G4324 Papaver somniferum HOM05D005168 ORTHO05D006358 4.3e-33 144.8 128 56.2
PSO675G5410 Papaver somniferum HOM05D005168 ORTHO05D006358 4.3e-33 144.8 128 56.2
TAR622G0958 Trochodendron aralioides HOM05D005168 ORTHO05D006358 4.7e-32 141.4 126 52.4
GSVIVG01009945001 Vitis vinifera HOM05D005168 ORTHO05D006358 1.4e-31 139.8 127 53.5
Manes.14G063600 Manihot esculenta HOM05D005168 ORTHO05D006358 4.0e-31 138.3 120 53.3
QL01p031168 Quercus lobata HOM05D005168 ORTHO05D006358 4.0e-31 138.3 120 54.2
Atru.chr1.3654 Acer truncatum HOM05D005168 ORTHO05D006358 5.2e-31 137.9 122 55.7
Haze_22662 Corylus avellana HOM05D005168 ORTHO05D006358 1.5e-30 136.3 120 53.3
Aa31LG4G6030 Aethionema arabicum HOM05D005168 ORTHO05D006358 2.0e-30 136.0 119 52.9
Psat5g045240 Pisum sativum HOM05D005168 ORTHO05D006358 2.0e-30 136.0 121 54.5
Cfa012889 Carpinus fangiana HOM05D005168 ORTHO05D006358 2.6e-30 135.6 120 53.3
CiPaw.07G147200 Carya illinoinensis HOM05D005168 ORTHO05D006358 3.4e-30 135.2 120 55.0
Haze_17776 Corylus avellana HOM05D005168 ORTHO05D006358 4.4e-30 134.8 120 52.5
Potri.013G015000 Populus trichocarpa HOM05D005168 ORTHO05D006358 5.8e-30 134.4 120 50.8
Sc15g0004820 Simmondsia chinensis HOM05D005168 ORTHO05D006358 5.8e-30 134.4 129 50.4
Ca_00384_v3 Cicer arietinum L. HOM05D005168 ORTHO05D006358 1.3e-29 133.3 121 52.9
MD08G1010500 Malus domestica HOM05D005168 ORTHO05D006358 3.8e-29 131.7 120 51.7
Thecc.08G047200 Theobroma cacao HOM05D005168 ORTHO05D006358 4.9e-29 131.3 122 55.7
CANSAT11G0916 Cannabis sativa HOM05D005168 ORTHO05D006358 6.4e-29 131.0 120 52.5
CDE11G0347 Ceratophyllum demersum HOM05D005168 ORTHO05D006358 6.4e-29 131.0 125 49.6
EL10Ac1g02165 Beta vulgaris HOM05D005168 ORTHO05D006358 1.9e-28 129.4 127 49.6
Cpa.g.sc58.102 Carica papaya HOM05D005168 ORTHO05D006358 2.4e-28 129.0 119 51.3
THA.LOC104811420 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 3.2e-28 128.6 119 51.3
Lj1g0018211 Lotus japonicus HOM05D005168 ORTHO05D006358 5.4e-28 127.9 121 50.4
Lalb_Chr11g0067001 Lupinus albus HOM05D005168 ORTHO05D006358 5.4e-28 127.9 119 52.9
Medtr3g102420 Medicago truncatula HOM05D005168 ORTHO05D006358 7.1e-28 127.5 119 52.9
THA.LOC104825468 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 9.3e-28 127.1 111 53.2
AL5G14600 Arabidopsis lyrata HOM05D005168 ORTHO05D006358 1.2e-27 126.7 119 52.1
MELO3C011355.2 Cucumis melo HOM05D005168 ORTHO05D006358 1.2e-27 126.7 120 50.8
Prupe.6G147400 Prunus persica HOM05D005168 ORTHO05D006358 1.2e-27 126.7 120 51.7
Os03g0711700 Oryza sativa ssp. japonica HOM05D005168 ORTHO05D006358 2.1e-27 125.9 127 49.6
arahy.Tifrunner.gnm1.ann1.TKX6L5 Arachis hypogaea HOM05D005168 ORTHO05D006358 2.7e-27 125.6 122 51.6
BcaB03g14336 Brassica carinata HOM05D005168 ORTHO05D006358 3.5e-27 125.2 119 51.3
BcaB03g14344 Brassica carinata HOM05D005168 ORTHO05D006358 3.5e-27 125.2 119 51.3
A07p16030 Brassica napus HOM05D005168 ORTHO05D006358 3.5e-27 125.2 119 51.3
C07p23400 Brassica napus HOM05D005168 ORTHO05D006358 3.5e-27 125.2 119 51.3
BolC7t42872H Brassica oleracea HOM05D005168 ORTHO05D006358 3.5e-27 125.2 119 51.3
BraA07t29331Z Brassica rapa HOM05D005168 ORTHO05D006358 3.5e-27 125.2 119 51.3
arahy.Tifrunner.gnm1.ann1.GU7A1M Arachis hypogaea HOM05D005168 ORTHO05D006358 4.6e-27 124.8 123 52.0
BcaB07g32021 Brassica carinata HOM05D005168 ORTHO05D006358 6.0e-27 124.4 119 50.4
CsaV3_2G024260 Cucumis sativus L. HOM05D005168 ORTHO05D006358 6.0e-27 124.4 120 49.2
THA.LOC104825467 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 6.0e-27 124.4 111 52.3
Sed0007604 Sechium edule HOM05D005168 ORTHO05D006358 7.8e-27 124.0 120 48.3
PGR031G0142 Punica granatum HOM05D005168 ORTHO05D006358 1.3e-26 123.2 120 50.8
Sp1g17830 Schrenkiella parvula HOM05D005168 ORTHO05D006358 1.3e-26 123.2 119 50.4
AT3G25940 Arabidopsis thaliana HOM05D005168 ORTHO05D006358 2.3e-26 122.5 119 50.4
BraA06t24725Z Brassica rapa HOM05D005168 ORTHO05D006358 3.0e-26 122.1 119 49.6
CARHR020540 Cardamine hirsuta HOM05D005168 ORTHO05D006358 3.0e-26 122.1 119 50.4
BcaC05g25900 Brassica carinata HOM05D005168 ORTHO05D006358 3.9e-26 121.7 119 49.6
C05p18550 Brassica napus HOM05D005168 ORTHO05D006358 3.9e-26 121.7 119 49.6
SEGI_04309 Sequoiadendron giganteum HOM05D005168 ORTHO05D006358 6.6e-26 120.9 128 44.5
BolC5t30566H Brassica oleracea HOM05D005168 ORTHO05D006358 8.7e-26 120.6 111 52.3
Glyma.03G178900 Glycine max HOM05D005168 ORTHO05D006358 8.7e-26 120.6 113 49.6
Carub.0005s0380 Capsella rubella HOM05D005168 ORTHO05D006358 1.1e-25 120.2 121 51.2
Thhalv10009132m.g Eutrema salsugineum HOM05D005168 ORTHO05D006358 1.1e-25 120.2 119 49.6
Eucgr.H00960 Eucalyptus grandis HOM05D005168 ORTHO05D006358 1.9e-25 119.4 120 49.2
Duzib093G1099 Durio zibethinus HOM05D005168 ORTHO05D006358 2.5e-25 119.0 123 52.8
Eucgr.C01258 Eucalyptus grandis HOM05D005168 ORTHO05D006358 2.5e-25 119.0 120 49.2
Thhalv10019327m.g Eutrema salsugineum HOM05D005168 ORTHO05D006358 2.5e-25 119.0 119 49.6
FvH4_1g24780 Fragaria vesca HOM05D005168 ORTHO05D006358 3.3e-25 118.6 119 50.4
Hund09202 Selenicereus undatus HOM05D005168 ORTHO05D006358 3.3e-25 118.6 127 46.5
A06p16200 Brassica napus HOM05D005168 ORTHO05D006358 4.3e-25 118.2 119 48.7
CARHR146930 Cardamine hirsuta HOM05D005168 ORTHO05D006358 9.6e-25 117.1 119 48.7
FAN23G3095 Fragaria x ananassa HOM05D005168 ORTHO05D006358 1.6e-24 116.3 119 49.6
Aqoxy2G01931 Aquilegia oxysepala HOM05D005168 ORTHO05D006358 2.8e-24 115.5 127 47.2
Ciclev10003775m.g Citrus clementina HOM05D005168 ORTHO05D006358 4.8e-24 114.8 115 47.0
Phvul.001G175600 Phaseolus vulgaris HOM05D005168 ORTHO05D006358 4.8e-24 114.8 114 50.0
Gohir.A06G002600 Gossypium hirsutum HOM05D005168 ORTHO05D006358 8.1e-24 114.0 122 51.6
Gohir.D06G005600 Gossypium hirsutum HOM05D005168 ORTHO05D006358 8.1e-24 114.0 122 51.6
Gorai.010G002800 Gossypium raimondii HOM05D005168 ORTHO05D006358 8.1e-24 114.0 122 51.6
VMungo1080G1160 Vigna mungo HOM05D005168 ORTHO05D006358 1.1e-23 113.6 121 47.9
Zm00001eb054840 Zea mays HOM05D005168 ORTHO05D006358 3.1e-23 112.1 119 47.1
AagrBONN_evm.TU.Sc2ySwM_368.3393 Anthoceros agrestis HOM05D005168 ORTHO05D006358 1.3e-21 106.7 123 43.9
Mapoly0043s0107 Marchantia polymorpha HOM05D005168 ORTHO05D006358 2.2e-21 105.9 121 43.8
Sabra13G0016900 Salix brachista HOM05D005168 ORTHO05D006358 1.6e-19 99.8 111 44.1
RcHm_v2.0_Chr2g0124111 Rosa chinensis HOM05D005168 ORTHO05D006358 4.6e-19 98.2 117 43.6
Sabra13G0012900 Salix brachista HOM05D005168 ORTHO05D006358 1.3e-18 96.7 97 46.4
Lj4A21T59 Lonicera japonica HOM05D005168 ORTHO05D006358 5.1e-18 94.7 75 56.0
Pp3c24_7070 Physcomitrium patens HOM05D005168 ORTHO05D006358 9.6e-17 90.5 155 33.5
Cre01.g018000 Chlamydomonas reinhardtii HOM05D005168 ORTHO05D006358 1.3e-16 90.1 121 37.2
Eucgr.L01842 Eucalyptus grandis HOM05D005168 ORTHO05D006358 4.8e-16 88.2 68 57.4
Aqoxy6G02286 Aquilegia oxysepala HOM05D005168 ORTHO05D006358 9.0e-15 84.0 117 39.3
ATR0057G015 Amborella trichopoda HOM05D005168 ORTHO05D006358 1.2e-14 83.6 90 45.6
HPP92_028162 Vanilla planifolia HOM05D005168 ORTHO05D006358 4.5e-14 81.6 91 47.3
SMO351G0141 Selaginella moellendorffii HOM05D005168 ORTHO05D006358 5.8e-14 81.3 115 35.7
MD15G1010600 Malus domestica HOM05D005168 ORTHO05D006358 8.4e-13 77.4 54 59.3
AT1G20065 Arabidopsis thaliana HOM05D005168 ORTHO05D006358 9.3e-12 73.9 61 55.7
BcaC05g25904 Brassica carinata HOM05D005168 ORTHO05D006358 2.1e-11 72.8 91 46.2
Ca_15982_v3 Cicer arietinum L. HOM05D005168 ORTHO05D006358 2.1e-11 72.8 53 54.7
AL1G32870 Arabidopsis lyrata HOM05D005168 ORTHO05D006358 7.9e-11 70.9 61 52.5
TPR.G9182 Trifolium pratense HOM05D005168 ORTHO05D006358 1.3e-10 70.1 80 42.5
MCO15G369 Micromonas commoda HOM05D005168 ORTHO05D006358 1.8e-10 69.7 130 30.8
Glyma.19G179600 Glycine max HOM05D005168 ORTHO05D006358 2.3e-10 69.3 59 45.8
ECA238G0944 Erigeron canadensis HOM05D005168 ORTHO05D006358 5.1e-10 68.2 71 38.0
CDE09G0329 Ceratophyllum demersum HOM05D005168 ORTHO05D006358 7.4e-09 64.3 78 42.3
FAN26G0870 Fragaria x ananassa HOM05D005168 ORTHO05D006358 1.3e-08 63.5 71 45.1
THA.LOC109116732 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 2.1e-08 62.8 45 62.2
Eucgr.F02832 Eucalyptus grandis HOM05D005168 ORTHO05D006358 3.7e-08 62.0 82 40.2
ClCG08G014170 Citrullus lanatus HOM05D005168 ORTHO05D006358 6.2e-08 61.2 40 65.0
Lsat_1_v5_gn_2_14240 Lactuca sativa HOM05D005168 ORTHO05D006358 1.1e-07 60.5 34 67.6
MSTRG.17362 Avicennia marina HOM05D006029 ORTHO05D007439 4.0e-07 58.5 119 29.4
CBR_g23850 Chara braunii HOM05D005168 ORTHO05D006358 1.5e-06 56.6 87 33.3
Glyma.08G246200 Glycine max HOM05D005168 ORTHO05D006358 2.6e-06 55.8 42 57.1
Glyma.17G201200 Glycine max HOM05D005168 ORTHO05D006358 4.5e-06 55.1 84 36.9
CANSAT56G3403 Cannabis sativa HOM05D006029 ORTHO05D007439 5.8e-06 54.7 108 32.4
Glyma.08G301902 Glycine max HOM05D005168 ORTHO05D006358 1.0e-05 53.9 84 35.7


User provided reference genes

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