Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038458 Camellia sinensis var. sinensis HOM05D006028 ORTHO05D007784 3.3e-209 731.5 377 100.0
CSS0040274 Camellia sinensis var. sinensis HOM05D006028 ORTHO05D007784 1.7e-205 719.2 377 98.1
Rhsim10G0067700 Rhododendron simsii HOM05D006028 ORTHO05D007784 1.9e-164 582.8 377 79.6
Actinidia15886 Actinidia chinensis HOM05D006028 ORTHO05D007784 4.7e-163 578.2 377 79.6
Hma1.2p1_1109F.1_g258060 Hydrangea macrophylla HOM05D006028 ORTHO05D007784 3.6e-155 552.0 378 75.7
Manes.02G069100 Manihot esculenta HOM05D006028 ORTHO05D007784 1.2e-142 510.4 377 71.1
Cfa007919 Carpinus fangiana HOM05D006028 ORTHO05D007784 3.5e-142 508.8 377 71.1
TWI53G1478 Tripterygium wilfordii HOM05D006028 ORTHO05D007784 1.0e-141 507.3 378 70.4
TAR629G2682 Trochodendron aralioides HOM05D006028 ORTHO05D007784 1.3e-141 506.9 377 70.3
Dinv34819 Davidia involucrata HOM05D006028 ORTHO05D007784 2.3e-141 506.1 377 73.5
GSVIVG01031016001 Vitis vinifera HOM05D006028 ORTHO05D007784 5.6e-140 501.5 377 70.0
PGSC0003DMG400026405 Solanum tuberosum HOM05D006028 ORTHO05D007784 7.3e-140 501.1 377 67.6
vmacro05550 Vaccinium macrocarpon HOM05D006028 ORTHO05D007784 7.3e-140 501.1 378 72.2
Lj2A441T56 Lonicera japonica HOM05D006028 ORTHO05D007784 9.5e-140 500.7 378 72.0
Sopen02g030790 Solanum pennellii HOM05D006028 ORTHO05D007784 2.1e-139 499.6 377 67.6
Haze_14158 Corylus avellana HOM05D006028 ORTHO05D007784 6.8e-138 494.6 385 68.8
Oeu008432.1 Olea europaea HOM05D006028 ORTHO05D007784 8.9e-138 494.2 377 66.8
Ciclev10011993m.g Citrus clementina HOM05D006028 ORTHO05D007784 1.2e-137 493.8 377 69.2
CAN.G625.27 Capsicum annuum HOM05D006028 ORTHO05D007784 5.8e-137 491.5 377 67.1
Thecc.04G133100 Theobroma cacao HOM05D006028 ORTHO05D007784 5.8e-137 491.5 379 69.7
Nitab4.5_0000912g0170 Nicotiana tabacum HOM05D006028 ORTHO05D007784 7.5e-137 491.1 377 66.3
ECA246G2307 Erigeron canadensis HOM05D006028 ORTHO05D007784 6.4e-136 488.0 377 67.1
QL02p051229 Quercus lobata HOM05D006028 ORTHO05D007784 5.4e-135 485.0 376 67.8
Atru.chr1.1685 Acer truncatum HOM05D006028 ORTHO05D007784 4.6e-134 481.9 377 67.6
Potri.004G099000 Populus trichocarpa HOM05D006028 ORTHO05D007784 1.3e-133 480.3 381 67.5
Nitab4.5_0004416g0010 Nicotiana tabacum HOM05D006028 ORTHO05D007784 2.3e-133 479.6 377 65.0
Prupe.3G142900 Prunus persica HOM05D006028 ORTHO05D007784 3.0e-133 479.2 380 65.8
Cc07_g08770 Coffea canephora HOM05D006028 ORTHO05D007784 2.5e-132 476.1 376 65.4
CiPaw.03G061900 Carya illinoinensis HOM05D006028 ORTHO05D007784 4.3e-132 475.3 377 66.8
CANSAT78G1220 Cannabis sativa HOM05D006028 ORTHO05D007784 4.7e-131 471.9 377 65.8
Gorai.008G055200 Gossypium raimondii HOM05D006028 ORTHO05D007784 3.4e-129 465.7 379 66.0
Gohir.D12G052100 Gossypium hirsutum HOM05D006028 ORTHO05D007784 7.6e-129 464.5 379 66.0
Aqoxy4G02499 Aquilegia oxysepala HOM05D006028 ORTHO05D007784 1.7e-128 463.4 379 64.9
Gohir.A12G053400 Gossypium hirsutum HOM05D006028 ORTHO05D007784 2.2e-128 463.0 379 65.4
COL.COLO4_09340 Corchorus olitorius HOM05D006028 ORTHO05D007784 1.2e-126 457.2 379 66.0
HanXRQChr12g0375811 Helianthus annuus HOM05D006028 ORTHO05D007784 1.6e-126 456.8 377 64.2
PGR004G1556 Punica granatum HOM05D006028 ORTHO05D007784 6.0e-126 454.9 377 62.9
Lsat_1_v5_gn_3_79681 Lactuca sativa HOM05D006028 ORTHO05D007784 1.0e-125 454.1 377 63.1
Migut.H00221 Erythranthe guttata HOM05D006028 ORTHO05D007784 5.1e-125 451.8 377 62.6
CsaV3_3G020280 Cucumis sativus L. HOM05D006028 ORTHO05D007784 4.3e-124 448.7 377 61.5
Glyma.14G193600 Glycine max HOM05D006028 ORTHO05D007784 4.4e-121 438.7 377 62.6
Duzib138G1322 Durio zibethinus HOM05D006028 ORTHO05D007784 7.6e-121 438.0 379 63.9
PSO017G5051 Papaver somniferum HOM05D006028 ORTHO05D007784 4.9e-120 435.3 382 61.3
Nn3g17886 Nelumbo nucifera HOM05D006028 ORTHO05D007784 1.1e-119 434.1 379 61.5
Hund13711 Selenicereus undatus HOM05D006028 ORTHO05D007784 1.9e-119 433.3 377 61.3
MELO3C023751.2 Cucumis melo HOM05D006028 ORTHO05D007784 3.2e-119 432.6 378 60.1
RcHm_v2.0_Chr6g0273571 Rosa chinensis HOM05D006028 ORTHO05D007784 1.6e-118 430.3 373 61.4
SGA_v2.0_scaffold33G13509 Striga asiatica HOM05D006028 ORTHO05D007784 1.6e-118 430.3 379 60.2
Glyma.02G226700 Glycine max HOM05D006028 ORTHO05D007784 2.7e-118 429.5 378 61.9
MSTRG.17981 Avicennia marina HOM05D006028 ORTHO05D007784 6.0e-118 428.3 383 61.1
SalBow3G3202 Salvia bowleyana HOM05D006028 ORTHO05D007784 1.0e-117 427.6 396 59.8
VMungo0647G1142 Vigna mungo HOM05D006028 ORTHO05D007784 1.5e-116 423.7 378 61.4
Eucgr.F02499 Eucalyptus grandis HOM05D006028 ORTHO05D007784 2.5e-116 422.9 341 63.0
ClCG05G012120 Citrullus lanatus HOM05D006028 ORTHO05D007784 3.3e-116 422.5 377 61.3
AUR62023297 Chenopodium quinoa HOM05D006028 ORTHO05D007784 4.3e-116 422.2 381 60.6
Phvul.008G261300 Phaseolus vulgaris HOM05D006028 ORTHO05D007784 5.6e-116 421.8 378 61.1
FvH4_4g11350 Fragaria vesca HOM05D006028 ORTHO05D007784 6.2e-115 418.3 376 59.3
PSO478G1932 Papaver somniferum HOM05D006028 ORTHO05D007784 8.1e-115 417.9 382 59.4
EL10Ac2g04560 Beta vulgaris HOM05D006028 ORTHO05D007784 1.8e-114 416.8 377 59.7
FAN07G0954 Fragaria x ananassa HOM05D006028 ORTHO05D007784 4.0e-114 415.6 376 58.8
Lalb_Chr10g0103311 Lupinus albus HOM05D006028 ORTHO05D007784 2.6e-113 412.9 378 59.5
Peaxi162Scf00394g00620 Petunia axillaris HOM05D006028 ORTHO05D007784 5.8e-113 411.8 377 59.7
THA.LOC104820944 Tarenaya hassleriana HOM05D006028 ORTHO05D007784 1.4e-111 407.1 381 59.1
TPR.G23017 Trifolium pratense HOM05D006028 ORTHO05D007784 1.4e-111 407.1 377 59.7
AUR62009005 Chenopodium quinoa HOM05D006028 ORTHO05D007784 3.2e-111 406.0 399 57.6
LjContig00155g0021894 Lotus japonicus HOM05D006028 ORTHO05D007784 4.2e-111 405.6 381 58.8
AT2G18410 Arabidopsis thaliana HOM05D006028 ORTHO05D007784 1.2e-110 404.1 381 58.8
ATR1125G043 Amborella trichopoda HOM05D006028 ORTHO05D007784 3.5e-110 402.5 390 55.1
Carub.0003s3256 Capsella rubella HOM05D006028 ORTHO05D007784 3.0e-109 399.4 381 58.8
Medtr5g070860 Medicago truncatula HOM05D006028 ORTHO05D007784 3.0e-109 399.4 377 57.8
AL3G51690 Arabidopsis lyrata HOM05D006028 ORTHO05D007784 1.5e-108 397.1 384 57.3
Thhalv10022737m.g Eutrema salsugineum HOM05D006028 ORTHO05D007784 2.5e-108 396.4 381 57.5
Sp3g31820 Schrenkiella parvula HOM05D006028 ORTHO05D007784 3.3e-108 396.0 381 57.5
SpUn0030_0010 Schrenkiella parvula HOM05D006028 ORTHO05D007784 3.3e-108 396.0 381 57.5
Sabra04G0080900 Salix brachista HOM05D006028 ORTHO05D007784 5.6e-108 395.2 382 57.9
A07p02330 Brassica napus HOM05D006028 ORTHO05D007784 7.4e-108 394.8 389 57.3
CARHR109010 Cardamine hirsuta HOM05D006028 ORTHO05D007784 2.1e-107 393.3 382 56.8
BcaC06g36407 Brassica carinata HOM05D006028 ORTHO05D007784 2.8e-107 392.9 381 57.2
BraA07t28024Z Brassica rapa HOM05D006028 ORTHO05D007784 6.2e-107 391.7 389 56.8
Ah.16g101740 Amaranthus hybridus HOM05D006028 ORTHO05D007784 4.0e-106 389.0 377 56.0
BolC7t40839H Brassica oleracea HOM05D006028 ORTHO05D007784 6.9e-106 388.3 385 56.4
Aa31LG8G15620 Aethionema arabicum HOM05D006028 ORTHO05D007784 9.0e-106 387.9 382 56.5
C07p04450 Brassica napus HOM05D006028 ORTHO05D007784 1.5e-105 387.1 385 56.9
BcaB03g16641 Brassica carinata HOM05D006028 ORTHO05D007784 2.1e-102 376.7 405 53.6
arahy.Tifrunner.gnm1.ann1.QNRR2Z Arachis hypogaea HOM05D006028 ORTHO05D007784 6.0e-102 375.2 377 56.8
HPP92_018993 Vanilla planifolia HOM05D006028 ORTHO05D007784 7.9e-102 374.8 381 53.0
MD00G1149900 Malus domestica HOM05D006028 ORTHO05D007784 1.5e-100 370.5 347 57.1
arahy.Tifrunner.gnm1.ann1.I9N3Y5 Arachis hypogaea HOM05D006028 ORTHO05D007784 2.1e-99 366.7 377 55.7
CDE05G1052 Ceratophyllum demersum HOM05D006028 ORTHO05D007784 1.3e-91 340.9 383 50.9
Zm00001eb007750 Zea mays HOM05D006028 ORTHO05D007784 2.5e-87 326.6 386 47.9
Os03g0201700 Oryza sativa ssp. japonica HOM05D006028 ORTHO05D007784 1.2e-86 324.3 385 45.5
Sc10g0001120 Simmondsia chinensis HOM05D006028 ORTHO05D007784 3.1e-82 309.7 263 61.6
Sed0006429 Sechium edule HOM05D006028 ORTHO05D007784 9.0e-82 308.1 282 58.9
Hma1.2p1_1109F.1_g258050 Hydrangea macrophylla HOM05D006028 ORTHO05D007784 2.0e-81 307.0 199 77.9
Psat0s2922g0040 Pisum sativum HOM05D006028 ORTHO05D007784 9.1e-74 281.6 261 56.3
Pp3c5_13580 Physcomitrium patens HOM05D006028 ORTHO05D007784 8.5e-72 275.0 391 42.7
Haze_14159 Corylus avellana HOM05D006028 ORTHO05D007784 1.4e-69 267.7 224 66.1
Ca_05599_v3 Cicer arietinum L. HOM05D006028 ORTHO05D007784 4.4e-68 262.7 317 51.1
Mapoly0156s0014 Marchantia polymorpha HOM05D006028 ORTHO05D007784 7.0e-66 255.4 392 42.1
Hma1.2p1_1109F.1_g258070 Hydrangea macrophylla HOM05D006028 ORTHO05D007784 6.7e-61 238.8 169 74.0
Solyc02g086100.4 Solanum lycopersicum HOM05D006028 ORTHO05D007784 1.7e-56 224.2 168 70.8
SMO351G0506 Selaginella moellendorffii HOM05D006028 ORTHO05D007784 6.5e-56 222.2 377 40.6
unitig_748.g7283 Utricularia gibba HOM05D006028 ORTHO05D007784 1.2e-54 218.0 380 39.7
QL02p051191 Quercus lobata HOM05D006028 ORTHO05D007784 4.4e-52 209.5 170 65.3
RcHm_v2.0_Chr1g0332721 Rosa chinensis HOM05D006028 ORTHO05D007784 4.8e-51 206.1 178 60.1
SEGI_33346 Sequoiadendron giganteum HOM05D006028 ORTHO05D007784 6.3e-51 205.7 233 48.9
Potri.017G115566 Populus trichocarpa HOM05D006028 ORTHO05D007784 1.2e-49 201.4 166 62.7
SHI29124 Sapria himalayana HOM05D006028 ORTHO05D007784 3.6e-46 189.9 275 42.5
SMO009G0016 Selaginella moellendorffii HOM05D006028 ORTHO05D007784 7.5e-44 182.2 374 37.4
Gorai.007G000700 Gossypium raimondii HOM05D006028 ORTHO05D007784 2.6e-36 157.1 170 54.1
Cpa.g.sc282.2 Carica papaya HOM05D006028 ORTHO05D007784 6.4e-35 152.5 192 49.0
Gohir.1Z049310 Gossypium hirsutum HOM05D006028 ORTHO05D007784 9.2e-34 148.7 189 45.0
Gohir.A09G249300 Gossypium hirsutum HOM05D006028 ORTHO05D007784 9.2e-34 148.7 189 44.4
Sabra17G0095800 Salix brachista HOM05D006028 ORTHO05D007784 3.5e-33 146.7 169 55.6
FAN17G0046 Fragaria x ananassa HOM05D006028 ORTHO05D007784 3.3e-31 140.2 158 51.3
AagrBONN_evm.TU.Sc2ySwM_368.1688 Anthoceros agrestis HOM05D006028 ORTHO05D007784 2.8e-22 110.5 144 50.0
AagrBONN_evm.TU.Sc2ySwM_368.1687 Anthoceros agrestis HOM05D006028 ORTHO05D007784 6.2e-22 109.4 165 34.5
Gohir.A06G000200 Gossypium hirsutum HOM05D006028 ORTHO05D007784 3.5e-17 93.6 99 47.5
Gohir.A12G000400 Gossypium hirsutum HOM05D006028 ORTHO05D007784 4.6e-17 93.2 92 51.1
SEGI_36511 Sequoiadendron giganteum HOM05D006028 ORTHO05D007784 1.0e-16 92.0 88 53.4
Nitab4.5_0014016g0010 Nicotiana tabacum HOM05D006028 ORTHO05D007784 3.9e-16 90.1 82 52.4
QL02p051195 Quercus lobata HOM05D006028 ORTHO05D007784 9.5e-15 85.5 69 59.4
Gohir.A01G231820 Gossypium hirsutum HOM05D006028 ORTHO05D007784 3.5e-09 67.0 76 48.7
CBR_g37698 Chara braunii HOM05D006028 ORTHO05D007784 4.3e-07 60.1 430 23.3


User provided reference genes

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