Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038425 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 0.0e+00 2511.1 1256 100.0
Dinv31774 Davidia involucrata HOM05D004363 ORTHO05D005110 0.0e+00 1981.5 1260 78.9
vmacro07483 Vaccinium macrocarpon HOM05D004363 ORTHO05D005110 0.0e+00 1961.8 1256 78.4
Rhsim11G0045000 Rhododendron simsii HOM05D004363 ORTHO05D005110 0.0e+00 1770.7 1155 76.8
TAR628G0010 Trochodendron aralioides HOM05D004363 ORTHO05D005110 0.0e+00 1766.1 1275 70.0
Oeu035643.1 Olea europaea HOM05D004363 ORTHO05D005110 0.0e+00 1757.3 1259 69.7
Ciclev10010925m.g Citrus clementina HOM05D004363 ORTHO05D005110 0.0e+00 1755.7 1265 68.9
Atru.chr8.1332 Acer truncatum HOM05D004363 ORTHO05D005110 0.0e+00 1754.6 1267 69.1
GSVIVG01022591001 Vitis vinifera HOM05D004363 ORTHO05D005110 0.0e+00 1754.6 1243 71.0
TAR169G0003 Trochodendron aralioides HOM05D004363 ORTHO05D005110 0.0e+00 1745.7 1274 69.3
MD12G1041600 Malus domestica HOM05D004363 ORTHO05D005110 0.0e+00 1730.7 1262 68.3
Prupe.7G093600 Prunus persica HOM05D004363 ORTHO05D005110 0.0e+00 1725.3 1263 68.7
CiPaw.10G018600 Carya illinoinensis HOM05D004363 ORTHO05D005110 0.0e+00 1720.3 1259 68.9
Solyc01g006960.3 Solanum lycopersicum HOM05D004363 ORTHO05D005110 0.0e+00 1706.4 1254 68.9
MD14G1040700 Malus domestica HOM05D004363 ORTHO05D005110 0.0e+00 1706.0 1272 67.0
Sopen01g002950 Solanum pennellii HOM05D004363 ORTHO05D005110 0.0e+00 1695.6 1254 68.6
Potri.016G068800 Populus trichocarpa HOM05D004363 ORTHO05D005110 0.0e+00 1682.5 1258 67.7
MSTRG.19302 Avicennia marina HOM05D004363 ORTHO05D005110 0.0e+00 1679.1 1259 66.7
COL.COLO4_29546 Corchorus olitorius HOM05D004363 ORTHO05D005110 0.0e+00 1675.6 1271 65.7
Duzib093G0100 Durio zibethinus HOM05D004363 ORTHO05D005110 0.0e+00 1671.8 1268 67.4
Migut.J00693 Erythranthe guttata HOM05D004363 ORTHO05D005110 0.0e+00 1670.6 1259 67.2
FvH4_6g20450 Fragaria vesca HOM05D004363 ORTHO05D005110 0.0e+00 1665.6 1264 66.6
CANSAT64G2344 Cannabis sativa HOM05D004363 ORTHO05D005110 0.0e+00 1665.2 1259 66.0
Dinv12347 Davidia involucrata HOM05D004363 ORTHO05D005110 0.0e+00 1661.7 1074 76.1
Duzib128G0297 Durio zibethinus HOM05D004363 ORTHO05D005110 0.0e+00 1657.1 1294 65.8
TWI74G0412 Tripterygium wilfordii HOM05D004363 ORTHO05D005110 0.0e+00 1656.3 1262 66.2
DCAR_020694 Daucus carota HOM05D004363 ORTHO05D005110 0.0e+00 1654.0 1331 63.3
MSTRG.5891 Avicennia marina HOM05D004363 ORTHO05D005110 0.0e+00 1652.1 1262 65.5
Sabra16G0069700 Salix brachista HOM05D004363 ORTHO05D005110 0.0e+00 1642.9 1273 66.3
Eucgr.A02575 Eucalyptus grandis HOM05D004363 ORTHO05D005110 0.0e+00 1642.1 1263 64.7
Nn6g34649 Nelumbo nucifera HOM05D004363 ORTHO05D005110 0.0e+00 1631.3 1282 64.7
CAN.G911.40 Capsicum annuum HOM05D004363 ORTHO05D005110 0.0e+00 1625.9 1254 65.2
CsaV3_3G038050 Cucumis sativus L. HOM05D004363 ORTHO05D005110 0.0e+00 1625.5 1260 64.0
TWI77G0878 Tripterygium wilfordii HOM05D004363 ORTHO05D005110 0.0e+00 1624.8 1296 64.0
ECA233G0072 Erigeron canadensis HOM05D004363 ORTHO05D005110 0.0e+00 1621.3 1259 65.1
Gohir.A11G315700 Gossypium hirsutum HOM05D004363 ORTHO05D005110 0.0e+00 1617.8 1265 65.8
Gorai.007G363900 Gossypium raimondii HOM05D004363 ORTHO05D005110 0.0e+00 1617.1 1266 65.8
Sed0002127 Sechium edule HOM05D004363 ORTHO05D005110 0.0e+00 1616.7 1261 63.7
Cfa020046 Carpinus fangiana HOM05D004363 ORTHO05D005110 0.0e+00 1616.3 1259 66.3
Gohir.D11G332900 Gossypium hirsutum HOM05D004363 ORTHO05D005110 0.0e+00 1615.5 1265 65.8
FAN09G2042 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1611.7 1353 60.8
ClCG10G018260 Citrullus lanatus HOM05D004363 ORTHO05D005110 0.0e+00 1611.3 1323 62.0
Ca_09062_v3 Cicer arietinum L. HOM05D004363 ORTHO05D005110 0.0e+00 1604.7 1270 63.6
FAN14G2782 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1603.6 1386 60.8
Glyma.03G202700 Glycine max HOM05D004363 ORTHO05D005110 0.0e+00 1600.1 1266 64.5
TPR.G31289 Trifolium pratense HOM05D004363 ORTHO05D005110 0.0e+00 1596.3 1265 63.6
Manes.08G034300 Manihot esculenta HOM05D004363 ORTHO05D005110 0.0e+00 1594.7 1212 67.5
Medtr7g106380 Medicago truncatula HOM05D004363 ORTHO05D005110 0.0e+00 1594.7 1265 63.9
HanXRQChr02g0053261 Helianthus annuus HOM05D004363 ORTHO05D005110 0.0e+00 1592.8 1257 64.1
Lj1g0000064 Lotus japonicus HOM05D004363 ORTHO05D005110 0.0e+00 1586.6 1263 63.3
Glyma.19G200400 Glycine max HOM05D004363 ORTHO05D005110 0.0e+00 1585.9 1266 64.1
Psat0s3922g0040 Pisum sativum HOM05D004363 ORTHO05D005110 0.0e+00 1583.2 1272 63.2
PGR004G0690 Punica granatum HOM05D004363 ORTHO05D005110 0.0e+00 1582.8 1258 63.6
Lalb_Chr01g0017831 Lupinus albus HOM05D004363 ORTHO05D005110 0.0e+00 1580.1 1268 64.3
arahy.Tifrunner.gnm1.ann1.KT4HPP Arachis hypogaea HOM05D004363 ORTHO05D005110 0.0e+00 1575.5 1262 63.4
VMungo1383G2497 Vigna mungo HOM05D004363 ORTHO05D005110 0.0e+00 1571.2 1262 62.9
Phvul.001G196200 Phaseolus vulgaris HOM05D004363 ORTHO05D005110 0.0e+00 1570.4 1265 63.2
THA.LOC104820934 Tarenaya hassleriana HOM05D004363 ORTHO05D005110 0.0e+00 1568.1 1267 62.0
arahy.Tifrunner.gnm1.ann1.D60SL5 Arachis hypogaea HOM05D004363 ORTHO05D005110 0.0e+00 1567.7 1278 62.5
Sc01g0005470 Simmondsia chinensis HOM05D004363 ORTHO05D005110 0.0e+00 1565.4 1260 63.9
Aqoxy1G00638 Aquilegia oxysepala HOM05D004363 ORTHO05D005110 0.0e+00 1557.3 1278 62.4
Cc06_g06670 Coffea canephora HOM05D004363 ORTHO05D005110 0.0e+00 1552.3 1110 69.6
Thecc.05G106200 Theobroma cacao HOM05D004363 ORTHO05D005110 0.0e+00 1539.6 1159 67.4
EL10Ac5g11738 Beta vulgaris HOM05D004363 ORTHO05D005110 0.0e+00 1530.8 1278 60.7
QL07p036386 Quercus lobata HOM05D004363 ORTHO05D005110 0.0e+00 1530.4 1109 70.2
Lsat_1_v5_gn_6_33820 Lactuca sativa HOM05D004363 ORTHO05D005110 0.0e+00 1524.2 1259 62.2
PSO339G1158 Papaver somniferum HOM05D004363 ORTHO05D005110 0.0e+00 1519.2 1267 61.4
Gorai.009G393900 Gossypium raimondii HOM05D004363 ORTHO05D005110 0.0e+00 1516.5 1288 59.9
PSO384G4461 Papaver somniferum HOM05D004363 ORTHO05D005110 0.0e+00 1512.3 1267 61.2
SGA_v2.0_scaffold13G06653 Striga asiatica HOM05D004363 ORTHO05D005110 0.0e+00 1508.0 1263 60.6
RcHm_v2.0_Chr3g0476301 Rosa chinensis HOM05D004363 ORTHO05D005110 0.0e+00 1494.9 1112 67.9
AL6G27170 Arabidopsis lyrata HOM05D004363 ORTHO05D005110 0.0e+00 1494.6 1259 60.7
AUR62041186 Chenopodium quinoa HOM05D004363 ORTHO05D005110 0.0e+00 1492.6 1260 58.4
AT5G16280 Arabidopsis thaliana HOM05D004363 ORTHO05D005110 0.0e+00 1483.4 1259 59.0
Carub.0006s1447 Capsella rubella HOM05D004363 ORTHO05D005110 0.0e+00 1480.7 1261 60.2
Sp6g27880 Schrenkiella parvula HOM05D004363 ORTHO05D005110 0.0e+00 1478.0 1259 60.2
Thhalv10012466m.g Eutrema salsugineum HOM05D004363 ORTHO05D005110 0.0e+00 1473.8 1258 60.3
C03p08890 Brassica napus HOM05D004363 ORTHO05D005110 0.0e+00 1470.3 1258 59.5
A10p22780 Brassica napus HOM05D004363 ORTHO05D005110 0.0e+00 1469.9 1259 59.3
BolC3t13384H Brassica oleracea HOM05D004363 ORTHO05D005110 0.0e+00 1469.9 1259 59.4
BolC9t58910H Brassica oleracea HOM05D004363 ORTHO05D005110 0.0e+00 1468.0 1257 59.4
BraA10t44344Z Brassica rapa HOM05D004363 ORTHO05D005110 0.0e+00 1467.6 1260 59.4
Aa31LG11G13340 Aethionema arabicum HOM05D004363 ORTHO05D005110 0.0e+00 1460.3 1276 58.9
BraA03t10093Z Brassica rapa HOM05D004363 ORTHO05D005110 0.0e+00 1459.1 1261 59.6
A03p07650 Brassica napus HOM05D004363 ORTHO05D005110 0.0e+00 1455.7 1261 59.4
Hund10860 Selenicereus undatus HOM05D004363 ORTHO05D005110 0.0e+00 1454.1 1266 59.3
Peaxi162Scf00582g00064 Petunia axillaris HOM05D004363 ORTHO05D005110 0.0e+00 1453.0 1168 64.0
FAN02G1528 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1452.6 1092 66.9
MELO3C009547.2 Cucumis melo HOM05D004363 ORTHO05D005110 0.0e+00 1427.2 1360 55.9
Lalb_Chr25g0287961 Lupinus albus HOM05D004363 ORTHO05D005110 0.0e+00 1424.5 1269 59.3
AUR62030686 Chenopodium quinoa HOM05D004363 ORTHO05D005110 0.0e+00 1417.9 1258 56.6
BcaB01g04994 Brassica carinata HOM05D004363 ORTHO05D005110 0.0e+00 1381.7 1253 57.4
HPP92_013952 Vanilla planifolia HOM05D004363 ORTHO05D005110 0.0e+00 1350.1 1256 54.8
ATR0772G191 Amborella trichopoda HOM05D004363 ORTHO05D005110 0.0e+00 1346.3 1292 55.3
FAN05G1872 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1345.5 1087 64.2
BcaNung06113 Brassica carinata HOM05D004363 ORTHO05D005110 0.0e+00 1340.1 1256 56.4
FAN05G3395 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 1332.8 1126 62.0
Os03g0786900 Oryza sativa ssp. japonica HOM05D004363 ORTHO05D005110 0.0e+00 1306.2 1248 54.3
Zm00001eb060010 Zea mays HOM05D004363 ORTHO05D005110 0.0e+00 1299.6 1260 52.4
Gohir.D04G092000 Gossypium hirsutum HOM05D004363 ORTHO05D005110 0.0e+00 1278.8 1052 60.5
CDE11G0453 Ceratophyllum demersum HOM05D004363 ORTHO05D005110 0.0e+00 1255.4 1258 52.5
SEGI_03324 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 0.0e+00 1195.3 1336 49.9
Nitab4.5_0001177g0040 Nicotiana tabacum HOM05D004363 ORTHO05D005110 0.0e+00 1112.8 886 63.7
Ah.07g203620 Amaranthus hybridus HOM05D004363 ORTHO05D005110 5.7e-290 1001.5 846 60.9
Pp3c6_8810 Physcomitrium patens HOM05D004363 ORTHO05D005110 4.9e-281 971.8 1342 40.4
CARHR197030 Cardamine hirsuta HOM05D004363 ORTHO05D005110 3.0e-270 936.0 648 70.4
Mapoly0053s0062 Marchantia polymorpha HOM05D004363 ORTHO05D005110 4.7e-260 902.1 1363 39.2
AagrBONN_evm.TU.Sc2ySwM_228.1566 Anthoceros agrestis HOM05D004363 ORTHO05D005110 1.2e-252 877.5 1186 41.4
Gohir.A04G054800 Gossypium hirsutum HOM05D004363 ORTHO05D005110 5.6e-245 852.0 752 58.2
unitig_578.g15812 Utricularia gibba HOM05D004363 ORTHO05D005110 8.1e-228 795.0 1256 38.5
SMO196G0050 Selaginella moellendorffii HOM05D004363 ORTHO05D005110 5.3e-203 712.6 932 43.1
Nitab4.5_0001191g0010 Nicotiana tabacum HOM05D004363 ORTHO05D005110 1.1e-197 694.9 621 58.5
TAR623G0254 Trochodendron aralioides HOM05D004363 ORTHO05D005110 5.5e-192 676.0 535 63.0
Cpa.g.sc104.18 Carica papaya HOM05D004363 ORTHO05D005110 7.0e-163 579.3 379 75.5
Lj1A1055T62 Lonicera japonica HOM05D004363 ORTHO05D005110 4.0e-158 563.5 349 80.5
Haze_20158 Corylus avellana HOM05D004363 ORTHO05D005110 2.9e-148 530.8 505 58.4
Cpa.g.sc104.13 Carica papaya HOM05D004363 ORTHO05D005110 2.7e-138 497.7 432 59.3
Actinidia03876 Actinidia chinensis HOM05D004363 ORTHO05D005110 2.6e-133 481.1 427 60.7
Cpa.g.sc104.16 Carica papaya HOM05D004363 ORTHO05D005110 2.7e-130 471.1 323 70.9
Actinidia03984 Actinidia chinensis HOM05D004363 ORTHO05D005110 9.0e-126 456.1 478 54.6
Haze_20157 Corylus avellana HOM05D004363 ORTHO05D005110 5.3e-102 377.1 222 77.5
Cre01.g024400 Chlamydomonas reinhardtii HOM05D004363 ORTHO05D005110 9.7e-96 356.3 1073 26.4
Lj1C1055T8 Lonicera japonica HOM05D004363 ORTHO05D005110 5.0e-92 344.0 209 78.0
Gohir.A04G054750 Gossypium hirsutum HOM05D004363 ORTHO05D005110 9.4e-91 339.7 214 76.6
Gohir.D04G091900 Gossypium hirsutum HOM05D004363 ORTHO05D005110 1.6e-90 339.0 209 77.0
Hma1.2p1_0064F.1_g034600 Hydrangea macrophylla HOM05D004363 ORTHO05D005110 5.7e-88 330.5 256 60.5
CSS0042424 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 5.3e-86 323.9 163 93.9
CSS0011588 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 5.3e-78 297.4 146 94.5
PRCOL_00001893 Prasinoderma coloniale HOM05D004363 ORTHO05D005110 3.4e-77 294.7 1014 25.5
SEGI_33831 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 1.4e-62 246.1 189 59.8
CBR_g74641 Chara braunii HOM05D004363 ORTHO05D005110 7.5e-56 223.8 706 26.8
Actinidia03879 Actinidia chinensis HOM05D004363 ORTHO05D005110 4.1e-54 218.0 143 76.2
Ah.07g203610 Amaranthus hybridus HOM05D004363 ORTHO05D005110 7.2e-51 207.2 183 53.0
MCO09G191 Micromonas commoda HOM05D004363 ORTHO05D005110 8.0e-50 203.8 965 22.4
Actinidia03986 Actinidia chinensis HOM05D004363 ORTHO05D005110 6.8e-49 200.7 118 80.5
Nn3g20229 Nelumbo nucifera HOM05D004363 ORTHO05D005110 4.4e-48 198.0 167 59.9
CSS0037163 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 2.3e-44 185.7 110 83.6
Rhsim11G0045100 Rhododendron simsii HOM05D004363 ORTHO05D005110 1.8e-41 176.0 115 76.5
SEGI_10491 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 5.0e-36 157.9 122 54.1
C09p60760 Brassica napus HOM05D004363 ORTHO05D005110 6.6e-36 157.5 120 65.0
SEGI_22432 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 4.3e-35 154.8 206 41.7
SEGI_28545 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 2.1e-34 152.5 114 78.1
RcHm_v2.0_Chr3g0476311 Rosa chinensis HOM05D004363 ORTHO05D005110 7.5e-32 144.1 119 56.3
SHI08961 Sapria himalayana HOM05D004363 ORTHO05D005110 6.4e-31 141.0 386 29.3
SHI08960 Sapria himalayana HOM05D004363 ORTHO05D005110 8.3e-31 140.6 193 42.5
SHI08956 Sapria himalayana HOM05D004363 ORTHO05D005110 1.0e-28 133.7 139 62.6
Ah.07g203630 Amaranthus hybridus HOM05D004363 ORTHO05D005110 1.2e-26 126.7 209 38.3
Actinidia03877 Actinidia chinensis HOM05D004363 ORTHO05D005110 3.6e-26 125.2 88 71.6
SEGI_19509 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 4.1e-22 111.7 86 64.0
SHI08951 Sapria himalayana HOM05D004363 ORTHO05D005110 1.3e-20 106.7 119 50.4
ATR0820G261 Amborella trichopoda HOM05D004363 ORTHO05D005110 9.5e-19 100.5 200 37.0
arahy.Tifrunner.gnm1.ann1.BA6WS2 Arachis hypogaea HOM05D004363 ORTHO05D005110 3.1e-17 95.5 60 66.7
SHI08954 Sapria himalayana HOM05D004363 ORTHO05D005110 2.2e-15 89.4 66 57.6
SHI08962 Sapria himalayana HOM05D004363 ORTHO05D005110 8.4e-15 87.4 201 28.9
arahy.Tifrunner.gnm1.ann1.P34FZA Arachis hypogaea HOM05D004363 ORTHO05D005110 3.5e-13 82.0 55 63.6
Lsat_1_v5_gn_8_3860 Lactuca sativa HOM05D004363 ORTHO05D005110 3.5e-13 82.0 87 51.7
Lsat_1_v5_gn_8_81001 Lactuca sativa HOM05D004363 ORTHO05D005110 3.0e-12 79.0 89 47.2
Lsat_1_v5_gn_3_22681 Lactuca sativa HOM05D004363 ORTHO05D005110 1.8e-09 69.7 45 73.3
arahy.Tifrunner.gnm1.ann1.5GE6FN Arachis hypogaea HOM05D000323 ORTHO05D000201 9.9e-08 63.9 41 65.9
Glyma.19G200100 Glycine max HOM05D003781 ORTHO05D004299 9.9e-08 63.9 73 64.4
CAN.G526.3 Capsicum annuum HOM05D004363 ORTHO05D005110 1.7e-07 63.2 81 61.7
Lsat_1_v5_gn_5_177961 Lactuca sativa HOM05D004363 ORTHO05D005110 1.7e-07 63.2 73 46.6
Lalb_Chr02g0153261 Lupinus albus HOM05D004363 ORTHO05D005110 4.9e-07 61.6 60 55.0
Sopen08g010030 Solanum pennellii HOM05D000004 ORTHO05D000034 4.2e-06 58.5 55 50.9


User provided reference genes

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