Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038308 Camellia sinensis var. sinensis HOM05D002593 ORTHO05D006476 9.2e-43 176.4 84 100.0
CSS0001259 Camellia sinensis var. sinensis HOM05D002593 ORTHO05D006476 2.7e-42 174.9 84 98.8
CSS0004310 Camellia sinensis var. sinensis HOM05D002593 ORTHO05D006476 8.0e-39 163.3 79 98.7
CSS0033070 Camellia sinensis var. sinensis HOM05D002593 ORTHO05D006476 8.0e-39 163.3 79 98.7
Actinidia06597 Actinidia chinensis HOM05D002593 ORTHO05D006476 4.1e-35 151.0 81 88.9
Dinv07259 Davidia involucrata HOM05D002593 ORTHO05D006476 2.8e-31 138.3 81 84.0
Ciclev10000418m.g Citrus clementina HOM05D002593 ORTHO05D006476 1.1e-30 136.3 81 81.5
Rhsim10G0129800 Rhododendron simsii HOM05D002593 ORTHO05D006476 2.0e-29 132.1 78 82.1
Oeu042316.1 Olea europaea HOM05D002593 ORTHO05D006476 9.8e-29 129.8 81 76.5
Potri.005G070700 Populus trichocarpa HOM05D002593 ORTHO05D006476 2.9e-28 128.3 80 77.5
vmacro12772 Vaccinium macrocarpon HOM05D002593 ORTHO05D006476 3.7e-28 127.9 79 81.0
CiPaw.07G075900 Carya illinoinensis HOM05D002593 ORTHO05D006476 1.4e-27 125.9 81 75.3
MELO3C008996.2 Cucumis melo HOM05D002593 ORTHO05D006476 1.4e-27 125.9 81 75.3
Migut.L00269 Erythranthe guttata HOM05D002593 ORTHO05D006476 1.4e-27 125.9 81 75.3
DCAR_000693 Daucus carota HOM05D002593 ORTHO05D006476 1.9e-27 125.6 81 77.8
CsaV3_4G031190 Cucumis sativus L. HOM05D002593 ORTHO05D006476 2.4e-27 125.2 81 75.3
MSTRG.3600 Avicennia marina HOM05D002593 ORTHO05D006476 3.2e-27 124.8 82 74.4
SalBow7G4483 Salvia bowleyana HOM05D002593 ORTHO05D006476 3.2e-27 124.8 81 72.8
Lj1A109G43 Lonicera japonica HOM05D002593 ORTHO05D006476 5.4e-27 124.0 83 75.9
TAR381G0271 Trochodendron aralioides HOM05D002593 ORTHO05D006476 5.4e-27 124.0 81 75.3
TAR381G0660 Trochodendron aralioides HOM05D002593 ORTHO05D006476 5.4e-27 124.0 81 75.3
Hma1.2p1_0619F.1_g190360 Hydrangea macrophylla HOM05D002593 ORTHO05D006476 1.6e-26 122.5 81 74.1
Peaxi162Scf00076g01057 Petunia axillaris HOM05D002593 ORTHO05D006476 2.0e-26 122.1 80 75.0
Atru.chr4.1131 Acer truncatum HOM05D002593 ORTHO05D006476 2.7e-26 121.7 81 69.1
ClCG04G001200 Citrullus lanatus HOM05D002593 ORTHO05D006476 2.7e-26 121.7 81 72.8
MD05G1249400 Malus domestica HOM05D002593 ORTHO05D006476 7.8e-26 120.2 81 74.1
Cfa002122 Carpinus fangiana HOM05D002593 ORTHO05D006476 1.0e-25 119.8 81 72.8
TWI79G0542 Tripterygium wilfordii HOM05D002593 ORTHO05D006476 1.0e-25 119.8 81 70.4
PGR119G1937 Punica granatum HOM05D002593 ORTHO05D006476 1.7e-25 119.0 81 69.1
RcHm_v2.0_Chr5g0020561 Rosa chinensis HOM05D002593 ORTHO05D006476 2.3e-25 118.6 81 71.6
Sabra05G0057500 Salix brachista HOM05D002593 ORTHO05D006476 2.3e-25 118.6 82 72.0
Cc11_g02090 Coffea canephora HOM05D002593 ORTHO05D006476 3.0e-25 118.2 79 70.9
Nitab4.5_0002512g0060 Nicotiana tabacum HOM05D002593 ORTHO05D006476 3.9e-25 117.9 79 70.9
PGSC0003DMG401014557 Solanum tuberosum HOM05D002593 ORTHO05D006476 3.9e-25 117.9 79 70.9
QL01p049838 Quercus lobata HOM05D002593 ORTHO05D006476 5.0e-25 117.5 72 79.2
PGSC0003DMG402014557 Solanum tuberosum HOM05D002593 ORTHO05D006476 5.0e-25 117.5 79 72.2
GSVIVG01022377001 Vitis vinifera HOM05D002593 ORTHO05D006476 5.0e-25 117.5 82 70.7
CANSAT01G0469 Cannabis sativa HOM05D002593 ORTHO05D006476 8.6e-25 116.7 81 70.4
Eucgr.I00094 Eucalyptus grandis HOM05D002593 ORTHO05D006476 8.6e-25 116.7 81 71.6
FAN25G3668 Fragaria x ananassa HOM05D002593 ORTHO05D006476 1.1e-24 116.3 81 69.1
Solyc05g009080.4 Solanum lycopersicum HOM05D002593 ORTHO05D006476 1.1e-24 116.3 79 69.6
CAN.G610.52 Capsicum annuum HOM05D002593 ORTHO05D006476 1.9e-24 115.5 79 70.9
FvH4_3g12600 Fragaria vesca HOM05D002593 ORTHO05D006476 1.9e-24 115.5 81 70.4
FAN16G0380 Fragaria x ananassa HOM05D002593 ORTHO05D006476 1.9e-24 115.5 81 70.4
FAN16G0459 Fragaria x ananassa HOM05D002593 ORTHO05D006476 1.9e-24 115.5 81 70.4
Sed0011819 Sechium edule HOM05D002593 ORTHO05D006476 1.9e-24 115.5 81 70.4
Sopen05g004810 Solanum pennellii HOM05D002593 ORTHO05D006476 1.9e-24 115.5 79 68.4
Cpa.g.sc37.46 Carica papaya HOM05D002593 ORTHO05D006476 5.6e-24 114.0 77 71.4
SGA_v2.0_scaffold244G44338 Striga asiatica HOM05D002593 ORTHO05D006476 5.6e-24 114.0 82 69.5
COL.COLO4_12118 Corchorus olitorius HOM05D002593 ORTHO05D003294 7.3e-24 113.6 82 70.7
Lalb_Chr12g0202891 Lupinus albus HOM05D002593 ORTHO05D006476 2.1e-23 112.1 82 72.0
Hund21782 Selenicereus undatus HOM05D002593 ORTHO05D006476 2.1e-23 112.1 80 71.2
Aqoxy6G00211 Aquilegia oxysepala HOM05D002593 ORTHO05D006476 3.6e-23 111.3 82 68.3
EL10Ac4g09659 Beta vulgaris HOM05D002593 ORTHO05D006476 8.1e-23 110.2 82 69.5
Gohir.D09G005200 Gossypium hirsutum HOM05D002593 ORTHO05D006476 1.4e-22 109.4 86 69.8
Gorai.006G006800 Gossypium raimondii HOM05D002593 ORTHO05D006476 1.4e-22 109.4 86 69.8
Lalb_Chr23g0272731 Lupinus albus HOM05D002593 ORTHO05D006476 1.8e-22 109.0 83 68.7
Psat7g043240 Pisum sativum HOM05D002593 ORTHO05D006476 1.8e-22 109.0 82 68.3
PSO170G1422 Papaver somniferum HOM05D002593 ORTHO05D006476 2.3e-22 108.6 86 64.0
AUR62000559 Chenopodium quinoa HOM05D002593 ORTHO05D006476 3.1e-22 108.2 81 69.1
PSO528G0279 Papaver somniferum HOM05D002593 ORTHO05D006476 3.1e-22 108.2 86 64.0
HanXRQChr03g0087641 Helianthus annuus HOM05D002593 ORTHO05D006476 4.0e-22 107.8 79 70.9
Gohir.A09G006100 Gossypium hirsutum HOM05D002593 ORTHO05D006476 5.2e-22 107.5 86 69.8
Thecc.01G142600 Theobroma cacao HOM05D002593 ORTHO05D006476 5.2e-22 107.5 82 65.9
Lj4g0024429 Lotus japonicus HOM05D002593 ORTHO05D006476 1.2e-21 106.3 82 67.1
Medtr8g094800 Medicago truncatula HOM05D002593 ORTHO05D006476 1.5e-21 105.9 83 65.1
Ah.06g188520 Amaranthus hybridus HOM05D002593 ORTHO05D006476 2.0e-21 105.5 81 70.4
Aa31LG3G17840 Aethionema arabicum HOM05D002593 ORTHO05D006476 3.4e-21 104.8 81 66.7
Ca_17607_v3 Cicer arietinum L. HOM05D002593 ORTHO05D006476 3.4e-21 104.8 82 65.9
AT5G08720 Arabidopsis thaliana HOM05D002593 ORTHO05D006476 5.8e-21 104.0 84 63.1
Duzib187G0031 Durio zibethinus HOM05D002593 ORTHO05D006476 5.8e-21 104.0 86 66.3
Carub.0006s0769 Capsella rubella HOM05D002593 ORTHO05D006476 7.5e-21 103.6 85 63.5
AUR62006910 Chenopodium quinoa HOM05D002593 ORTHO05D006476 7.5e-21 103.6 82 68.3
AL6G19470 Arabidopsis lyrata HOM05D002593 ORTHO05D006476 1.3e-20 102.8 84 61.9
ECA248G3631 Erigeron canadensis HOM05D002593 ORTHO05D006476 1.3e-20 102.8 79 68.4
BcaB08g37230 Brassica carinata HOM05D002593 ORTHO05D006476 2.2e-20 102.1 86 62.8
C09p68260 Brassica napus HOM05D002593 ORTHO05D006476 2.2e-20 102.1 86 62.8
BolC9t59574H Brassica oleracea HOM05D002593 ORTHO05D006476 2.2e-20 102.1 86 62.8
Sp6g34150 Schrenkiella parvula HOM05D002593 ORTHO05D006476 2.9e-20 101.7 89 61.8
Sc06g0005350 Simmondsia chinensis HOM05D002593 ORTHO05D006476 2.9e-20 101.7 72 69.4
A10p28060 Brassica napus HOM05D002593 ORTHO05D006476 4.9e-20 100.9 86 62.8
BraA10t44855Z Brassica rapa HOM05D002593 ORTHO05D006476 4.9e-20 100.9 86 62.8
VMungo1309G1997 Vigna mungo HOM05D002593 ORTHO05D006476 4.9e-20 100.9 76 69.7
CARHR204290 Cardamine hirsuta HOM05D002593 ORTHO05D006476 6.4e-20 100.5 86 61.6
TPR.G37380 Trifolium pratense HOM05D002593 ORTHO05D006476 8.3e-20 100.1 81 63.0
Thhalv10015845m.g Eutrema salsugineum HOM05D002593 ORTHO05D006476 1.1e-19 99.8 85 61.2
arahy.Tifrunner.gnm1.ann1.06HUX3 Arachis hypogaea HOM05D002593 ORTHO05D006476 1.4e-19 99.4 82 64.6
Lsat_1_v5_gn_1_80920 Lactuca sativa HOM05D002593 ORTHO05D006476 1.4e-19 99.4 79 67.1
Glyma.04G207200 Glycine max HOM05D002593 ORTHO05D006476 3.2e-19 98.2 79 65.8
arahy.Tifrunner.gnm1.ann1.3HC2CW Arachis hypogaea HOM05D002593 ORTHO05D006476 4.1e-19 97.8 82 64.6
Glyma.08G003500 Glycine max HOM05D002593 ORTHO05D006476 4.1e-19 97.8 83 63.9
CDE02G1715 Ceratophyllum demersum HOM05D002593 ORTHO05D006476 5.4e-19 97.4 79 60.8
Glyma.05G195900 Glycine max HOM05D002593 ORTHO05D006476 1.2e-18 96.3 83 62.7
Phvul.002G276400 Phaseolus vulgaris HOM05D002593 ORTHO05D006476 1.6e-18 95.9 83 63.9
Phvul.009G151900 Phaseolus vulgaris HOM05D002593 ORTHO05D006476 2.1e-18 95.5 79 63.3
Os03g0837900 Oryza sativa ssp. japonica HOM05D002593 ORTHO05D006476 3.5e-18 94.7 79 58.2
Haze_16323 Corylus avellana HOM05D002593 ORTHO05D006476 6.0e-18 94.0 61 75.4
VMungo0251G1864 Vigna mungo HOM05D002593 ORTHO05D006476 6.0e-18 94.0 83 60.2
TWI31G0641 Tripterygium wilfordii HOM05D002593 ORTHO05D006476 3.3e-16 88.2 79 58.2
Hma1.2p1_0619F.1_g190380 Hydrangea macrophylla HOM05D002593 ORTHO05D006476 8.9e-14 80.1 46 80.4
arahy.Tifrunner.gnm1.ann1.2HG3UE Arachis hypogaea HOM05D002593 ORTHO05D006476 2.6e-13 78.6 80 61.2
arahy.Tifrunner.gnm1.ann1.VT8BG2 Arachis hypogaea HOM05D002593 ORTHO05D006476 2.6e-13 78.6 80 61.2
FAN26G1490 Fragaria x ananassa HOM05D002593 ORTHO05D006476 1.7e-12 75.9 50 72.0
arahy.Tifrunner.gnm1.ann1.898NT1 Arachis hypogaea HOM05D002593 ORTHO05D006476 8.4e-12 73.6 73 56.2
Actinidia20056 Actinidia chinensis HOM05D002593 ORTHO05D006476 1.4e-11 72.8 40 85.0
unitig_899.g14455 Utricularia gibba HOM05D002593 ORTHO05D006476 2.1e-10 68.9 74 52.7
SEGI_39457 Sequoiadendron giganteum HOM05D002593 ORTHO05D006476 3.1e-06 55.1 30 76.7
HPP92_025044 Vanilla planifolia HOM05D002593 ORTHO05D006476 4.0e-06 54.7 30 80.0


User provided reference genes

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