Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038227 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 0.0e+00 1315.1 678 100.0
Rhsim01G0197500 Rhododendron simsii HOM05D001598 ORTHO05D007192 0.0e+00 1108.2 657 86.8
Dinv32128 Davidia involucrata HOM05D001598 ORTHO05D007192 0.0e+00 1100.5 670 84.8
vmacro14297 Vaccinium macrocarpon HOM05D001598 ORTHO05D007192 0.0e+00 1094.3 662 85.3
Hma1.2p1_0218F.1_g092460 Hydrangea macrophylla HOM05D001598 ORTHO05D007192 1.6e-310 1068.9 678 81.1
Actinidia22467 Actinidia chinensis HOM05D001598 ORTHO05D007192 1.1e-298 1029.6 657 82.2
COL.COLO4_25318 Corchorus olitorius HOM05D001598 ORTHO05D007192 1.9e-295 1018.8 659 79.8
TAR375G0698 Trochodendron aralioides HOM05D001598 ORTHO05D007192 4.3e-292 1007.7 679 77.6
Ciclev10014503m.g Citrus clementina HOM05D001598 ORTHO05D007192 1.6e-291 1005.7 657 78.5
Eucgr.J00614 Eucalyptus grandis HOM05D001598 ORTHO05D007192 4.0e-290 1001.1 679 76.7
Atru.chr3.2751 Acer truncatum HOM05D001598 ORTHO05D007192 2.6e-289 998.4 676 76.0
DCAR_000741 Daucus carota HOM05D001598 ORTHO05D007192 3.4e-289 998.0 656 77.7
Gorai.009G080100 Gossypium raimondii HOM05D001598 ORTHO05D007192 3.4e-289 998.0 659 77.8
Solyc01g009050.3 Solanum lycopersicum HOM05D001598 ORTHO05D007192 2.9e-288 995.0 679 75.6
Gohir.A05G076000 Gossypium hirsutum HOM05D001598 ORTHO05D007192 3.2e-287 991.5 659 77.1
GSVIVG01037501001 Vitis vinifera HOM05D001598 ORTHO05D007192 4.2e-287 991.1 657 79.6
Sopen01g004540 Solanum pennellii HOM05D001598 ORTHO05D007192 5.4e-287 990.7 679 75.4
CAN.G651.7 Capsicum annuum HOM05D001598 ORTHO05D007192 1.0e-285 986.5 679 75.0
Potri.009G156400 Populus trichocarpa HOM05D001598 ORTHO05D007192 1.9e-284 982.2 657 77.8
Gohir.D05G078700 Gossypium hirsutum HOM05D001598 ORTHO05D007192 2.5e-284 981.9 652 77.6
Sabra09G0122500 Salix brachista HOM05D001598 ORTHO05D007192 2.6e-281 971.8 657 77.0
SGA_v2.0_scaffold16G07584 Striga asiatica HOM05D001598 ORTHO05D007192 2.9e-280 968.4 658 74.0
AL6G32560 Arabidopsis lyrata HOM05D001598 ORTHO05D007192 8.4e-280 966.8 662 73.6
Nitab4.5_0002300g0120 Nicotiana tabacum HOM05D001598 ORTHO05D007192 1.1e-279 966.5 671 75.0
CiPaw.13G127200 Carya illinoinensis HOM05D001598 ORTHO05D007192 5.5e-279 964.1 655 76.8
CARHR191850 Cardamine hirsuta HOM05D001598 ORTHO05D007192 3.5e-278 961.4 663 73.5
RcHm_v2.0_Chr5g0048741 Rosa chinensis HOM05D001598 ORTHO05D007192 3.5e-278 961.4 664 74.5
CSS0048937 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 1.0e-277 959.9 498 100.0
MD11G1181200 Malus domestica HOM05D001598 ORTHO05D007192 3.0e-277 958.4 658 73.7
AT5G20990 Arabidopsis thaliana HOM05D001598 ORTHO05D007192 5.1e-277 957.6 662 73.1
CANSAT54G2824 Cannabis sativa HOM05D001598 ORTHO05D007192 9.6e-276 953.4 668 73.8
Migut.N02410 Erythranthe guttata HOM05D001598 ORTHO05D007192 2.8e-275 951.8 663 74.5
SalBow3G4459 Salvia bowleyana HOM05D001598 ORTHO05D007192 2.8e-275 951.8 661 74.0
PGR119G0245 Punica granatum HOM05D001598 ORTHO05D007192 4.8e-275 951.0 678 73.3
TWI31G0930 Tripterygium wilfordii HOM05D001598 ORTHO05D007192 6.2e-275 950.7 671 74.2
BraA03t10351Z Brassica rapa HOM05D001598 ORTHO05D007192 1.1e-274 949.9 667 72.0
A03p10390 Brassica napus HOM05D001598 ORTHO05D007192 2.4e-274 948.7 660 72.6
AUR62020182 Chenopodium quinoa HOM05D001598 ORTHO05D007192 4.1e-274 948.0 660 74.8
MSTRG.12417 Avicennia marina HOM05D001598 ORTHO05D007192 9.0e-274 946.8 657 74.9
Cc01_g07890 Coffea canephora HOM05D001598 ORTHO05D007192 1.5e-273 946.0 668 73.8
Thhalv10012894m.g Eutrema salsugineum HOM05D001598 ORTHO05D007192 2.0e-273 945.7 659 72.8
Aqoxy3G02341 Aquilegia oxysepala HOM05D001598 ORTHO05D007192 4.5e-273 944.5 657 74.4
Carub.0006s1931 Capsella rubella HOM05D001598 ORTHO05D007192 1.1e-271 939.9 662 72.8
BolC3t13663H Brassica oleracea HOM05D001598 ORTHO05D007192 4.2e-271 937.9 667 71.1
PSO063G3947 Papaver somniferum HOM05D001598 ORTHO05D007192 4.2e-271 937.9 679 71.6
Glyma.02G272700 Glycine max HOM05D001598 ORTHO05D007192 1.8e-269 932.6 654 72.9
Lalb_Chr10g0105801 Lupinus albus HOM05D001598 ORTHO05D007192 4.3e-268 927.9 652 72.4
EL10Ac7g16239 Beta vulgaris HOM05D001598 ORTHO05D007192 2.8e-267 925.2 693 71.3
ECA247G1799 Erigeron canadensis HOM05D001598 ORTHO05D007192 8.2e-267 923.7 663 72.1
Phvul.008G209600 Phaseolus vulgaris HOM05D001598 ORTHO05D007192 8.2e-267 923.7 654 72.2
C03p11930 Brassica napus HOM05D001598 ORTHO05D007192 3.1e-266 921.8 664 71.4
Hund20974 Selenicereus undatus HOM05D001598 ORTHO05D007192 3.1e-266 921.8 653 72.7
MELO3C015599.2 Cucumis melo HOM05D001598 ORTHO05D007192 1.5e-265 919.5 667 71.2
CsaV3_1G041840 Cucumis sativus L. HOM05D001598 ORTHO05D007192 1.5e-265 919.5 666 71.2
HanXRQChr06g0180651 Helianthus annuus HOM05D001598 ORTHO05D007192 2.6e-265 918.7 653 73.2
LjContig00564g0017485 Lotus japonicus HOM05D001598 ORTHO05D007192 2.6e-265 918.7 654 72.9
Medtr5g087490 Medicago truncatula HOM05D001598 ORTHO05D007192 3.4e-265 918.3 655 73.0
Sp6g23530 Schrenkiella parvula HOM05D001598 ORTHO05D007192 1.7e-264 916.0 660 71.1
ClCG03G014390 Citrullus lanatus HOM05D001598 ORTHO05D007192 2.5e-263 912.1 667 70.6
Sed0001025 Sechium edule HOM05D001598 ORTHO05D007192 4.2e-263 911.4 666 70.3
TPR.G11692 Trifolium pratense HOM05D001598 ORTHO05D007192 4.6e-262 907.9 655 71.3
Aa31LG1G13740 Aethionema arabicum HOM05D001598 ORTHO05D007192 1.0e-261 906.7 660 70.0
VMungo0647G2429 Vigna mungo HOM05D001598 ORTHO05D007192 2.3e-261 905.6 657 71.5
arahy.Tifrunner.gnm1.ann1.4UW9RQ Arachis hypogaea HOM05D001598 ORTHO05D007192 8.2e-259 897.1 692 69.4
arahy.Tifrunner.gnm1.ann1.IS34PQ Arachis hypogaea HOM05D001598 ORTHO05D007192 2.4e-258 895.6 692 69.1
Oeu051504.1 Olea europaea HOM05D001598 ORTHO05D007192 1.5e-257 892.9 666 71.5
Nitab4.5_0000428g0110 Nicotiana tabacum HOM05D001598 ORTHO05D007192 2.6e-257 892.1 671 70.3
Lsat_1_v5_gn_2_37520 Lactuca sativa HOM05D001598 ORTHO05D007192 3.4e-257 891.7 659 71.3
FAN25G1601 Fragaria x ananassa HOM05D001598 ORTHO05D007192 8.5e-256 887.1 658 69.9
MBI07_g03077_MAGBIO Magnolia biondii HOM05D001598 ORTHO05D007192 1.2e-254 883.2 662 69.8
Thecc.09G265000 Theobroma cacao HOM05D001598 ORTHO05D007192 8.8e-253 877.1 662 71.0
Manes.11G103300 Manihot esculenta HOM05D001598 ORTHO05D007192 1.3e-251 873.2 604 75.8
AUR62001598 Chenopodium quinoa HOM05D001598 ORTHO05D007192 2.2e-251 872.5 691 68.5
FAN11G2542 Fragaria x ananassa HOM05D001598 ORTHO05D007192 4.8e-251 871.3 666 68.6
FAN21G0325 Fragaria x ananassa HOM05D001598 ORTHO05D007192 1.1e-250 870.2 657 69.3
Ah.08g222590 Amaranthus hybridus HOM05D001598 ORTHO05D007192 1.8e-250 869.4 613 75.0
unitig_8.g2986 Utricularia gibba HOM05D001598 ORTHO05D007192 2.6e-249 865.5 644 71.1
ATR0215G007 Amborella trichopoda HOM05D001598 ORTHO05D007192 5.9e-249 864.4 661 68.1
Haze_23633 Corylus avellana HOM05D001598 ORTHO05D007192 7.7e-249 864.0 739 64.5
Zm00001eb432770 Zea mays HOM05D001598 ORTHO05D007192 2.5e-247 859.0 660 67.6
Cpa.g.sc34.224 Carica papaya HOM05D001598 ORTHO05D007192 2.7e-246 855.5 618 73.1
Peaxi162Scf00050g02227 Petunia axillaris HOM05D001598 ORTHO05D007192 8.0e-246 854.0 868 56.7
Psat2g023160 Pisum sativum HOM05D001598 ORTHO05D007192 9.7e-244 847.0 604 72.8
Prupe.6G153900 Prunus persica HOM05D001598 ORTHO05D007192 4.5e-241 838.2 592 73.6
Sc21g0006570 Simmondsia chinensis HOM05D001598 ORTHO05D007192 2.2e-232 809.3 593 72.0
Ca_06138_v3 Cicer arietinum L. HOM05D001598 ORTHO05D007192 1.5e-223 780.0 654 64.8
CDE02G2133 Ceratophyllum demersum HOM05D001598 ORTHO05D007192 1.7e-219 766.5 680 61.3
Pp3c14_4050 Physcomitrium patens HOM05D001598 ORTHO05D007192 1.5e-215 753.4 684 59.5
CDE06G2705 Ceratophyllum demersum HOM05D001598 ORTHO05D007192 2.8e-214 749.2 695 60.1
QL01p007286 Quercus lobata HOM05D001598 ORTHO05D007192 2.3e-213 746.1 848 52.4
SMO145G0256 Selaginella moellendorffii HOM05D001598 ORTHO05D007192 1.5e-204 716.8 660 58.3
Lj2C893G11 Lonicera japonica HOM05D001598 ORTHO05D007192 2.8e-198 696.0 476 76.7
HPP92_013469 Vanilla planifolia HOM05D001598 ORTHO05D007192 9.2e-194 681.0 574 64.3
FvH4_3g26260 Fragaria vesca HOM05D001598 ORTHO05D007192 1.7e-192 676.8 515 68.5
AagrBONN_evm.TU.Sc2ySwM_228.3025 Anthoceros agrestis HOM05D001598 ORTHO05D007192 3.5e-185 652.5 664 54.2
Atru.ctg664.11 Acer truncatum HOM05D001598 ORTHO05D007192 1.1e-173 614.4 493 66.7
Mapoly1495s0001 Marchantia polymorpha HOM05D001598 ORTHO05D007192 2.1e-169 600.1 564 57.8
HPP92_013468 Vanilla planifolia HOM05D001598 ORTHO05D007192 2.5e-167 593.2 605 58.0
SEGI_02371 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 2.4e-149 533.5 436 65.8
Lj2A895G19 Lonicera japonica HOM05D001598 ORTHO05D007192 4.6e-145 519.2 440 65.0
Cre10.g451400 Chlamydomonas reinhardtii HOM05D001598 ORTHO05D007192 6.1e-113 412.5 458 50.7
SEGI_00915 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 2.2e-110 404.1 345 63.5
CSS0046041 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 1.6e-92 344.7 205 87.3
Lj2A895T22 Lonicera japonica HOM05D001598 ORTHO05D007192 3.3e-82 310.5 201 78.1
SHI25335 Sapria himalayana HOM05D001598 ORTHO05D000001 2.0e-79 301.2 232 63.4
AagrBONN_evm.TU.Sc2ySwM_117.1323 Anthoceros agrestis HOM05D001598 ORTHO05D007192 4.9e-78 296.6 409 43.3
MCO09G295 Micromonas commoda HOM05D001598 ORTHO05D007192 7.1e-77 292.7 439 41.7
HPP92_013448 Vanilla planifolia HOM05D001598 ORTHO05D007192 8.4e-70 269.2 181 74.6
vmacro23059 Vaccinium macrocarpon HOM05D001598 ORTHO05D007192 6.0e-68 263.1 250 62.0
SEGI_37017 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 9.0e-64 249.2 170 72.4
TPR.G11462 Trifolium pratense HOM05D001598 ORTHO05D007192 2.9e-62 244.2 285 51.9
PRCOL_00000516 Prasinoderma coloniale HOM05D005603 ORTHO05D006944 1.6e-60 238.4 379 40.4
Nn1g00103 Nelumbo nucifera HOM05D001598 ORTHO05D007192 3.2e-53 214.2 159 69.2
Zm00001eb067470 Zea mays HOM05D001598 ORTHO05D007192 3.7e-41 174.1 167 58.1
CBR_g53773 Chara braunii HOM05D000019 ORTHO05D000002 9.0e-40 169.5 427 31.9
QL01p007301 Quercus lobata HOM05D001598 ORTHO05D007192 3.8e-38 164.1 99 80.8
CBR_g53784 Chara braunii HOM05D001598 ORTHO05D007192 1.4e-37 162.2 147 57.8
TPR.G24627 Trifolium pratense HOM05D001598 ORTHO05D007192 1.6e-36 158.7 146 58.9
Nn1g08035 Nelumbo nucifera HOM05D001598 ORTHO05D007192 1.3e-35 155.6 92 80.4
HanXRQChr07g0205981 Helianthus annuus HOM05D001598 ORTHO05D007192 4.3e-34 150.6 94 77.7
BcaB08g37328 Brassica carinata HOM05D001598 ORTHO05D007192 3.7e-33 147.5 93 77.4
Lj2C893T10 Lonicera japonica HOM05D001598 ORTHO05D007192 6.9e-32 143.3 79 88.6
SHI25334 Sapria himalayana HOM05D001598 ORTHO05D000001 5.9e-31 140.2 89 76.4
SEGI_32063 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 3.8e-30 137.5 113 61.1
Mapoly0056s0125 Marchantia polymorpha HOM05D001598 ORTHO05D007192 6.5e-30 136.7 101 64.4
PRCOL_00002568 Prasinoderma coloniale HOM05D001598 ORTHO05D007192 4.7e-28 130.6 161 46.0
MCO03G199 Micromonas commoda HOM05D001598 ORTHO05D007192 5.7e-26 123.6 187 40.6
BcaB08g37330 Brassica carinata HOM05D001598 ORTHO05D007192 3.7e-25 120.9 81 75.3
SGA_v2.0_scaffold6G03251 Striga asiatica HOM05D001598 ORTHO05D007192 4.1e-24 117.5 92 68.5
Ca_14173_v3 Cicer arietinum L. HOM05D000092 ORTHO05D005910 4.5e-23 114.0 96 67.7
Ca_02574_v3 Cicer arietinum L. HOM05D000009 ORTHO05D000008 1.1e-21 109.4 84 70.2
Cre06.g282150 Chlamydomonas reinhardtii HOM05D001598 ORTHO05D007192 3.6e-20 104.4 175 37.7
BcaC04g19497 Brassica carinata HOM05D001598 ORTHO05D007192 1.4e-19 102.4 88 63.6
Glyma.14G045450 Glycine max HOM05D001598 ORTHO05D007192 2.3e-19 101.7 65 73.8
TAR374G1328 Trochodendron aralioides HOM05D001598 ORTHO05D007192 1.5e-18 99.0 85 62.4
Gohir.D02G147550 Gossypium hirsutum HOM05D006828 ORTHO05D008312 5.3e-16 90.5 50 86.0
Gorai.013G167300 Gossypium raimondii HOM05D006828 ORTHO05D008312 5.3e-16 90.5 50 86.0
Os04g0661600 Oryza sativa ssp. japonica HOM05D001598 ORTHO05D007192 1.2e-15 89.4 61 75.4
Sc01g0005570 Simmondsia chinensis HOM05D001598 ORTHO05D007192 1.6e-15 89.0 70 62.9
Gohir.D05G085901 Gossypium hirsutum HOM05D001598 ORTHO05D008312 6.5e-14 83.6 50 78.0
CBR_g53769 Chara braunii HOM05D000019 ORTHO05D000002 1.2e-12 79.3 51 68.6
TPR.G22712 Trifolium pratense HOM05D001598 ORTHO05D046738 1.5e-10 72.4 89 51.7
TWI56G1164 Tripterygium wilfordii HOM05D001598 ORTHO05D007192 5.3e-08 63.9 49 61.2
SMO307G0084 Selaginella moellendorffii HOM05D001598 ORTHO05D007192 7.0e-08 63.5 62 45.2


User provided reference genes

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