Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0038215 Camellia sinensis var. sinensis HOM05D007265 ORTHO05D009118 1.0e-28 129.4 66 100.0
Nitab4.5_0000258g0270 Nicotiana tabacum HOM05D007265 ORTHO05D009118 5.2e-25 117.1 66 87.9
Nitab4.5_0003865g0020 Nicotiana tabacum HOM05D007265 ORTHO05D009118 8.8e-25 116.3 64 90.6
Nitab4.5_0001763g0020 Nicotiana tabacum HOM05D007265 ORTHO05D009118 2.6e-24 114.8 66 89.4
CAN.G1415.20 Capsicum annuum HOM05D007265 ORTHO05D009118 3.4e-24 114.4 66 87.9
DCAR_005402 Daucus carota HOM05D007265 ORTHO05D009118 3.4e-24 114.4 66 86.4
Duzib138G0325 Durio zibethinus HOM05D007265 ORTHO05D009118 3.4e-24 114.4 66 89.4
Gohir.A11G097900 Gossypium hirsutum HOM05D007265 ORTHO05D009118 3.4e-24 114.4 66 89.4
Gohir.D11G102600 Gossypium hirsutum HOM05D007265 ORTHO05D009118 3.4e-24 114.4 66 89.4
Lj7E499T0 Lonicera japonica HOM05D007265 ORTHO05D009118 3.4e-24 114.4 66 86.4
Hma1.2p1_0390F.1_g142620 Hydrangea macrophylla HOM05D007265 ORTHO05D009118 5.7e-24 113.6 64 89.1
Oeu008708.1 Olea europaea HOM05D007265 ORTHO05D009118 5.7e-24 113.6 64 87.5
DCAR_025264 Daucus carota HOM05D007265 ORTHO05D009118 7.5e-24 113.2 66 87.9
Gohir.D12G116700 Gossypium hirsutum HOM05D007265 ORTHO05D009118 9.8e-24 112.8 66 87.9
Nn1g00287 Nelumbo nucifera HOM05D007265 ORTHO05D009118 9.8e-24 112.8 64 89.1
GSVIVG01027169001 Vitis vinifera HOM05D007265 ORTHO05D009118 1.3e-23 112.5 66 86.4
PGR042G1917 Punica granatum HOM05D007265 ORTHO05D009118 1.7e-23 112.1 66 87.9
CiPaw.01G077600 Carya illinoinensis HOM05D007265 ORTHO05D009118 2.2e-23 111.7 63 88.9
Cc02_g39560 Coffea canephora HOM05D007265 ORTHO05D009118 2.2e-23 111.7 63 88.9
Os05g0542100 Oryza sativa ssp. japonica HOM05D007265 ORTHO05D009118 2.8e-23 111.3 64 85.9
Gohir.A12G113200 Gossypium hirsutum HOM05D007265 ORTHO05D009118 3.7e-23 110.9 66 86.4
Prupe.2G190600 Prunus persica HOM05D007265 ORTHO05D009118 3.7e-23 110.9 63 88.9
PGSC0003DMG400000233 Solanum tuberosum HOM05D007265 ORTHO05D009118 6.3e-23 110.2 64 87.5
TAR374G1528 Trochodendron aralioides HOM05D007265 ORTHO05D009118 6.3e-23 110.2 61 91.8
Duzib133G0073 Durio zibethinus HOM05D007265 ORTHO05D009118 8.3e-23 109.8 66 86.4
Solyc01g096090.4 Solanum lycopersicum HOM05D007265 ORTHO05D009118 8.3e-23 109.8 66 86.4
Sopen01g039810 Solanum pennellii HOM05D007265 ORTHO05D009118 8.3e-23 109.8 66 86.4
ATR0602G127 Amborella trichopoda HOM05D007265 ORTHO05D009118 1.4e-22 109.0 64 87.5
PSO063G4371 Papaver somniferum HOM05D007265 ORTHO05D009118 1.4e-22 109.0 64 84.4
Sed0002056 Sechium edule HOM05D007265 ORTHO05D009118 1.4e-22 109.0 63 85.7
Thecc.01G340400 Theobroma cacao HOM05D007265 ORTHO05D009118 1.8e-22 108.6 66 86.4
MD01G1083600 Malus domestica HOM05D007265 ORTHO05D009118 2.4e-22 108.2 63 87.3
MD07G1152300 Malus domestica HOM05D007265 ORTHO05D009118 2.4e-22 108.2 63 87.3
PSO170G4391 Papaver somniferum HOM05D007265 ORTHO05D009118 2.4e-22 108.2 64 84.4
THA.LOC104802081 Tarenaya hassleriana HOM05D007265 ORTHO05D009118 3.1e-22 107.8 66 78.8
Atru.chr5.686 Acer truncatum HOM05D007265 ORTHO05D009118 4.1e-22 107.5 63 84.1
HanXRQChr03g0093001 Helianthus annuus HOM05D007265 ORTHO05D009118 5.4e-22 107.1 63 81.0
arahy.Tifrunner.gnm1.ann1.4N8QKH Arachis hypogaea HOM05D007265 ORTHO05D009118 9.1e-22 106.3 61 86.9
THA.LOC104817372 Tarenaya hassleriana HOM05D007265 ORTHO05D009118 1.2e-21 105.9 66 77.3
Ciclev10023834m.g Citrus clementina HOM05D007265 ORTHO05D009118 1.6e-21 105.5 64 81.2
Migut.N01534 Erythranthe guttata HOM05D007265 ORTHO05D009118 1.6e-21 105.5 66 78.8
CANSAT56G3703 Cannabis sativa HOM05D007265 ORTHO05D009118 2.0e-21 105.1 63 81.0
MELO3C022263.2 Cucumis melo HOM05D007265 ORTHO05D009118 2.0e-21 105.1 63 82.5
CsaV3_6G008500 Cucumis sativus L. HOM05D007265 ORTHO05D009118 3.5e-21 104.4 63 82.5
Aqoxy5G04249 Aquilegia oxysepala HOM05D007265 ORTHO05D009118 4.5e-21 104.0 61 83.6
Glyma.03G258500 Glycine max HOM05D007265 ORTHO05D009118 5.9e-21 103.6 63 81.0
Glyma.19G257100 Glycine max HOM05D007265 ORTHO05D009118 5.9e-21 103.6 63 81.0
Phvul.006G114500 Phaseolus vulgaris HOM05D007265 ORTHO05D009118 7.7e-21 103.2 63 81.0
HanXRQChr16g0521331 Helianthus annuus HOM05D007265 ORTHO05D009118 1.0e-20 102.8 64 81.2
AT2G46540 Arabidopsis thaliana HOM05D007265 ORTHO05D009118 1.3e-20 102.4 66 78.8
arahy.Tifrunner.gnm1.ann1.PH1UFL Arachis hypogaea HOM05D007265 ORTHO05D009118 1.3e-20 102.4 60 85.0
Sp4g28590 Schrenkiella parvula HOM05D007265 ORTHO05D009118 1.3e-20 102.4 66 78.8
HPP92_020189 Vanilla planifolia HOM05D004435 ORTHO05D005103 1.3e-20 102.4 64 79.7
AL4G45970 Arabidopsis lyrata HOM05D007265 ORTHO05D009118 1.7e-20 102.1 66 77.3
BcaC02g12671 Brassica carinata HOM05D007265 ORTHO05D009118 1.7e-20 102.1 64 79.7
BcaC02g12679 Brassica carinata HOM05D007265 ORTHO05D009118 1.7e-20 102.1 64 79.7
C04p01380 Brassica napus HOM05D007265 ORTHO05D009118 1.7e-20 102.1 64 79.7
BolC4t21791H Brassica oleracea HOM05D007265 ORTHO05D009118 1.7e-20 102.1 64 79.7
BraA05t19124Z Brassica rapa HOM05D007265 ORTHO05D009118 1.7e-20 102.1 64 79.7
Carub.0004s2926 Capsella rubella HOM05D007265 ORTHO05D009118 1.7e-20 102.1 64 79.7
Potri.002G173101 Populus trichocarpa HOM05D007265 ORTHO05D009118 1.7e-20 102.1 68 77.9
vmacro13170 Vaccinium macrocarpon HOM05D007265 ORTHO05D009118 1.7e-20 102.1 58 89.7
HanXRQChr13g0423241 Helianthus annuus HOM05D007265 ORTHO05D009118 2.3e-20 101.7 64 76.6
Lj1g0009143 Lotus japonicus HOM05D007265 ORTHO05D009118 2.9e-20 101.3 63 79.4
Manes.05G021500 Manihot esculenta HOM05D007265 ORTHO05D009118 3.8e-20 100.9 63 82.5
TWI59G0786 Tripterygium wilfordii HOM05D007265 ORTHO05D009118 3.8e-20 100.9 63 79.4
CARHR141880 Cardamine hirsuta HOM05D007265 ORTHO05D009118 5.0e-20 100.5 66 77.3
Sabra02G0140200 Salix brachista HOM05D007265 ORTHO05D009118 6.6e-20 100.1 68 75.0
Manes.01G244801 Manihot esculenta HOM05D007265 ORTHO05D009118 1.1e-19 99.4 63 82.5
Ca_09518_v3 Cicer arietinum L. HOM05D007265 ORTHO05D009118 1.5e-19 99.0 63 74.6
Oeu007878.1 Olea europaea HOM05D007265 ORTHO05D009118 1.9e-19 98.6 55 90.9
Medtr7g117700 Medicago truncatula HOM05D007265 ORTHO05D009118 4.2e-19 97.4 63 74.6
Rhsim01G0174400 Rhododendron simsii HOM05D007265 ORTHO05D009118 4.2e-19 97.4 82 67.1
Sc01g0002550 Simmondsia chinensis HOM05D007265 ORTHO05D009118 5.5e-19 97.1 57 80.7
Lsat_1_v5_gn_3_126500 Lactuca sativa HOM05D007265 ORTHO05D009118 9.5e-19 96.3 57 82.5
Lalb_Chr15g0076341 Lupinus albus HOM05D007265 ORTHO05D009118 1.2e-18 95.9 63 76.2
Nn3g18955 Nelumbo nucifera HOM05D007265 ORTHO05D009118 1.6e-18 95.5 64 82.8
Gorai.008G126400 Gossypium raimondii HOM05D007265 ORTHO05D009118 2.1e-18 95.1 55 87.3
Lalb_Chr18g0044541 Lupinus albus HOM05D007265 ORTHO05D009118 3.6e-18 94.4 63 76.2
SalBow5G3999 Salvia bowleyana HOM05D002476 ORTHO05D002652 3.6e-18 94.4 55 85.5
BcaC02g07039 Brassica carinata HOM05D007265 ORTHO05D009118 4.7e-18 94.0 66 74.2
Psat3g174080 Pisum sativum HOM05D007265 ORTHO05D009118 4.7e-18 94.0 56 82.1
ClCG06G002640 Citrullus lanatus HOM05D007265 ORTHO05D009118 6.1e-18 93.6 56 80.4
MBI07_g24775_MAGBIO Magnolia biondii HOM05D007265 ORTHO05D009118 6.1e-18 93.6 60 80.0
A04p34450 Brassica napus HOM05D007265 ORTHO05D009118 1.4e-17 92.4 66 72.7
Lsat_1_v5_gn_4_39661 Lactuca sativa HOM05D007265 ORTHO05D009118 1.8e-17 92.0 58 77.6
Hund16719 Selenicereus undatus HOM05D007265 ORTHO05D009118 1.8e-17 92.0 81 60.5
BraA04t18903Z Brassica rapa HOM05D007265 ORTHO05D009118 5.2e-17 90.5 66 71.2
MSTRG.17355 Avicennia marina HOM05D007265 ORTHO05D009118 6.8e-17 90.1 55 83.6
Psat3g001880 Pisum sativum HOM05D007265 ORTHO05D009118 6.8e-17 90.1 52 84.6
Hund27188 Selenicereus undatus HOM05D007265 ORTHO05D009118 1.5e-16 89.0 57 75.4
COL.COLO4_06226 Corchorus olitorius HOM05D007265 ORTHO05D009118 2.6e-16 88.2 54 85.2
BolC4t28709H Brassica oleracea HOM05D007265 ORTHO05D009118 5.7e-16 87.0 66 68.2
BcaC02g07016 Brassica carinata HOM05D007265 ORTHO05D009118 9.8e-16 86.3 58 75.9
A05p01230 Brassica napus HOM05D007265 ORTHO05D009118 9.8e-16 86.3 55 80.0
Os01g0705500 Oryza sativa ssp. japonica HOM05D007265 ORTHO05D009118 2.2e-15 85.1 49 85.7
EL10Ac1g00247 Beta vulgaris HOM05D007265 ORTHO05D009118 8.3e-15 83.2 55 69.1
Aa31LG1G27910 Aethionema arabicum HOM05D007265 ORTHO05D009118 1.8e-14 82.0 54 74.1
Gorai.007G109700 Gossypium raimondii HOM05D007265 ORTHO05D009118 2.4e-14 81.6 48 87.5
AUR62004508 Chenopodium quinoa HOM05D007265 ORTHO05D009118 7.0e-14 80.1 54 70.4
Thhalv10001742m.g Eutrema salsugineum HOM05D007265 ORTHO05D009118 9.2e-14 79.7 114 45.6
Ah.05g179400 Amaranthus hybridus HOM05D007265 ORTHO05D009118 1.0e-12 76.3 57 64.9
SGA_v2.0_scaffold232G43548 Striga asiatica HOM05D007265 ORTHO05D009118 1.7e-12 75.5 39 94.9
BcaNung06658 Brassica carinata HOM05D007265 ORTHO05D009118 8.6e-12 73.2 47 78.7
Nitab4.5_0010712g0030 Nicotiana tabacum HOM05D007265 ORTHO05D009118 4.3e-11 70.9 37 91.9
RcHm_v2.0_Chr1g0360081 Rosa chinensis HOM05D000497 ORTHO05D013080 1.2e-10 69.3 37 89.2
TAR375G0162 Trochodendron aralioides HOM05D007265 ORTHO05D009118 2.9e-07 58.2 45 77.8
Potri.014G100250 Populus trichocarpa HOM05D007265 ORTHO05D009118 1.4e-06 55.8 42 66.7


User provided reference genes

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